1 | // ================================================================ // |
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2 | // // |
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3 | // File : AWTC_submission.cxx // |
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4 | // Purpose : // |
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5 | // // |
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6 | // Institute of Microbiology (Technical University Munich) // |
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7 | // http://www.arb-home.de/ // |
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8 | // // |
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9 | // ================================================================ // |
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10 | |
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11 | #include <aw_window.hxx> |
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12 | #include <aw_awars.hxx> |
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13 | #include <aw_edit.hxx> |
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14 | #include <aw_root.hxx> |
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15 | #include <aw_msg.hxx> |
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16 | |
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17 | #include <arbdbt.h> |
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18 | #include <arb_strbuf.h> |
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19 | #include <arb_strarray.h> |
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20 | |
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21 | #define awtc_assert(bed) arb_assert(bed) |
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22 | |
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23 | |
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24 | #define AWAR_PARSER "tmp/submission/parser" |
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25 | #define AWAR_PARSED "tmp/submission/parsed" |
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26 | |
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27 | void AWTC_create_submission_variables(AW_root *root, AW_default db1) |
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28 | { |
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29 | root->awar_string("submission/source", "", db1); |
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30 | root->awar_string(AWAR_PARSER, "press READ INFO", db1); |
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31 | root->awar_string(AWAR_PARSED, "", db1); |
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32 | root->awar_string("submission/file", "", db1); |
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33 | root->awar_string("submission/privat", "$(ADDRESS, db1)=TUM Munich:\n"); |
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34 | } |
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35 | |
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36 | static void ed_calltexe_event(AW_window *aww, char *varname) |
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37 | { |
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38 | AW_root *aw_root = aww->get_root(); |
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39 | char *file; |
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40 | file = aw_root->awar(varname)->read_string(); |
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41 | AW_edit(file); |
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42 | free(file); |
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43 | } |
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44 | |
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45 | static AW_window *create_calltexe_window(AW_root *root, char *varname) { |
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46 | AW_window_simple *aws = new AW_window_simple; |
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47 | { |
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48 | char *var_id = GBS_string_2_key(varname); |
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49 | char *window_id = GBS_global_string_copy("SUBM_TEXTEDIT_%s", var_id); |
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50 | aws->init(root, window_id, "START TEXT EDITOR"); |
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51 | free(window_id); |
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52 | free(var_id); |
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53 | } |
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54 | |
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55 | aws->load_xfig("calltexe.fig"); |
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56 | aws->label_length(18); |
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57 | aws->button_length(8); |
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58 | |
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59 | aws->at("close"); |
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60 | aws->callback ((AW_CB0)AW_POPDOWN); |
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61 | aws->create_button("CLOSE", "CLOSE", "O"); |
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62 | |
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63 | aws->at("file"); |
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64 | aws->create_input_field(varname, 34); |
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65 | |
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66 | aws->at("edit"); |
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67 | aws->callback((AW_CB1)ed_calltexe_event, (AW_CL)varname); |
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68 | aws->create_button("EDIT", "EDIT", "E"); |
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69 | |
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70 | return (AW_window *)aws; |
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71 | } |
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72 | |
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73 | static void ed_submit_info_event_rm(char *string) |
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74 | { |
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75 | char *p = string; |
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76 | int c; |
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77 | while ((c=*p) != 0) { |
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78 | if (c==':') *p = ';'; |
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79 | if (c=='=') *p = '-'; |
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80 | p++; |
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81 | } |
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82 | } |
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83 | |
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84 | static void ed_submit_info_event(AW_window *aww, AW_CL cl_gbmain) { |
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85 | GBDATA *gb_main = (GBDATA*)cl_gbmain; |
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86 | AW_root *aw_root = aww->get_root(); |
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87 | |
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88 | GB_transaction ta(gb_main); |
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89 | char *species_name = aw_root->awar(AWAR_SPECIES_NAME)->read_string(); |
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90 | GBDATA *gb_species = GBT_find_species(gb_main, species_name); |
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91 | GBS_strstruct *strstruct = GBS_stropen(1000); |
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92 | |
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93 | if (gb_species) { |
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94 | for (GBDATA *gb_entry = GB_child(gb_species); gb_entry; gb_entry = GB_nextChild(gb_entry)) { |
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95 | int type = GB_read_type(gb_entry); |
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96 | switch (type) { |
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97 | case GB_STRING: |
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98 | case GB_INT: |
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99 | case GB_BITS: |
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100 | case GB_FLOAT: { |
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101 | char *key = GB_read_key(gb_entry); |
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102 | |
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103 | GBS_strcat(strstruct, "$("); |
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104 | GBS_strcat(strstruct, key); |
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105 | GBS_strcat(strstruct, ")="); |
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106 | free(key); |
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107 | |
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108 | key = GB_read_as_string(gb_entry); |
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109 | ed_submit_info_event_rm(key); |
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110 | GBS_strcat(strstruct, key); |
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111 | free(key); |
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112 | |
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113 | GBS_strcat(strstruct, ":\n"); |
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114 | break; |
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115 | } |
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116 | default: |
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117 | break; |
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118 | } |
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119 | } |
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120 | char *seq_info = GBS_string_eval(" ", "*=" |
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121 | "$(SEQ_LEN)\\=*(|sequence|len(.-))\\:\n" |
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122 | "$(SEQ_A)\\=*(|sequence|count(aA))\\:\n" |
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123 | "$(SEQ_C)\\=*(|sequence|count(cC))\\:\n" |
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124 | "$(SEQ_G)\\=*(|sequence|count(gG))\\:\n" |
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125 | "$(SEQ_T)\\=*(|sequence|count(tT))\\:\n" |
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126 | "$(SEQ_U)\\=*(|sequence|count(uU))\\:\n" |
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127 | "$(SEQUENCE)\\=*(|sequence|remove(.-)|format_sequence(firsttab\\=12;tab\\=12;width\\=60;numleft;gap\\=10))\\:\n" |
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128 | , gb_species); |
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129 | if (seq_info) { |
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130 | GBS_strcat(strstruct, seq_info); |
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131 | free(seq_info); |
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132 | } |
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133 | else { |
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134 | aw_message(GB_await_error()); |
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135 | } |
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136 | } |
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137 | else { |
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138 | GBS_strcat(strstruct, "Species not found"); |
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139 | } |
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140 | |
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141 | char *parser = GBS_strclose(strstruct); |
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142 | aw_root->awar(AWAR_PARSER)->write_string(parser); |
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143 | |
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144 | free(parser); |
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145 | free(species_name); |
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146 | } |
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147 | |
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148 | static void ed_save_var_to_file(AW_window *aww, char *data_var, char *file_var) { |
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149 | AW_root *aw_root = aww->get_root(); |
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150 | char *data = aw_root->awar(data_var)->read_string(); |
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151 | char *file_name = aw_root->awar(file_var)->read_string(); |
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152 | FILE *out = fopen(file_name, "w"); |
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153 | |
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154 | if (out) { |
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155 | fprintf(out, "%s", data); |
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156 | fclose(out); |
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157 | } |
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158 | else { |
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159 | GB_export_IO_error("saving info", file_name); |
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160 | aw_message(GB_await_error()); |
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161 | } |
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162 | free(file_name); |
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163 | free(data); |
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164 | } |
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165 | static void ed_submit_parse_event(AW_window *aww) |
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166 | { |
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167 | AW_root *aw_root = aww->get_root(); |
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168 | char *parser = aw_root->awar(AWAR_PARSER)->read_string(); |
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169 | char *dest; |
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170 | char *dest2; |
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171 | char *privat; |
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172 | char *p, *d; |
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173 | int c; |
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174 | |
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175 | for (d = p = parser; *p; p++) { |
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176 | if ((c=*p)==':') { |
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177 | if (p[1] == '\n') p++; // skip newline |
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178 | } |
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179 | *(d++) = c; |
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180 | } |
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181 | *d = 0; |
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182 | char *sub_file = aw_root->awar("submission/source")->read_string(); |
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183 | char *source = GB_read_file(sub_file); |
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184 | if (source) { |
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185 | dest = GBS_string_eval(source, parser, 0); |
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186 | if (!dest) dest = strdup(GB_await_error()); |
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187 | } |
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188 | else { |
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189 | dest = GBS_global_string_copy("submission form not found\n(Reason: %s)", GB_await_error()); |
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190 | } |
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191 | |
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192 | awtc_assert(dest); // should contain partly filled form or error message |
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193 | |
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194 | privat = aw_root->awar("submission/privat")->read_string(); |
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195 | for (d = p = privat; *p; p++) { |
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196 | if ((c=*p)==':') { |
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197 | if (p[1] == '\n') p++; // skip newline |
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198 | } |
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199 | *(d++) = c; |
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200 | } |
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201 | *d = 0; |
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202 | |
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203 | dest2 = GBS_string_eval(dest, privat, 0); |
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204 | if (!dest2) dest2 = strdup(GB_await_error()); |
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205 | |
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206 | aw_root->awar(AWAR_PARSED)->write_string(dest2); |
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207 | |
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208 | free(dest); |
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209 | free(dest2); |
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210 | free(privat); |
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211 | free(source); |
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212 | free (sub_file); |
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213 | free(parser); |
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214 | } |
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215 | |
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216 | static void ed_submit_gen_event(AW_window *aww) |
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217 | { |
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218 | AW_root *aw_root = aww->get_root(); |
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219 | char buffer[256]; |
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220 | char *name = aw_root->awar(AWAR_SPECIES_NAME)->read_string(); |
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221 | sprintf(buffer, "%s.submit", name); |
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222 | free(name); |
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223 | aw_root->awar("submission/file")->write_string(buffer); |
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224 | } |
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225 | |
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226 | |
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227 | AW_window *AWTC_create_submission_window(AW_root *root, GBDATA *gb_main) { |
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228 | AW_window_simple *aws = new AW_window_simple; |
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229 | aws->init(root, "SUBMISSION", "SUBMISSION"); |
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230 | |
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231 | aws->load_xfig("submiss.fig"); |
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232 | aws->label_length(18); |
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233 | aws->button_length(8); |
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234 | |
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235 | aws->at("close"); |
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236 | aws->callback ((AW_CB0)AW_POPDOWN); |
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237 | aws->create_button("CLOSE", "CLOSE", "O"); |
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238 | |
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239 | aws->callback(makeHelpCallback("submission.hlp")); |
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240 | aws->at("help"); |
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241 | aws->create_button("HELP", "HELP", "H"); |
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242 | |
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243 | aws->button_length(15); |
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244 | |
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245 | aws->at("privat"); |
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246 | aws->create_text_field("submission/privat", 80, 5); |
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247 | |
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248 | aws->at("parsed_info"); |
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249 | aws->create_text_field(AWAR_PARSER, 80, 6); |
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250 | |
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251 | aws->at("parsed"); |
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252 | aws->create_text_field(AWAR_PARSED, 80, 13); |
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253 | |
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254 | aws->at("species"); |
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255 | aws->label("Species Name:"); |
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256 | aws->create_input_field(AWAR_SPECIES_NAME, 12); |
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257 | |
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258 | aws->at("submission"); |
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259 | { |
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260 | StrArray submits; |
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261 | GBS_read_dir(submits, GB_path_in_ARBLIB("submit"), NULL); |
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262 | |
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263 | if (!submits.empty()) { |
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264 | aws->create_option_menu("submission/source", "Select a Form", "s"); |
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265 | for (int i = 0; submits[i]; ++i) { |
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266 | aws->insert_option(submits[i], "", submits[i]); |
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267 | } |
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268 | aws->insert_default_option("default", "d", "default"); |
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269 | aws->update_option_menu(); |
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270 | } |
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271 | } |
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272 | |
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273 | aws->at("gen"); |
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274 | aws->label("Gen File Name"); |
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275 | aws->callback(ed_submit_gen_event); |
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276 | aws->create_button("GEN_FILE_NAME", "CREATE NAME", "C"); |
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277 | |
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278 | aws->at("file"); |
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279 | aws->label("or enter"); |
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280 | aws->create_input_field("submission/file", 30); |
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281 | |
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282 | aws->at("info"); |
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283 | aws->callback(ed_submit_info_event, (AW_CL)gb_main); |
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284 | aws->create_button("READ_INFO", "READ INFO", "R"); |
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285 | |
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286 | aws->at("parse"); |
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287 | aws->callback((AW_CB0)ed_submit_parse_event); |
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288 | aws->create_button("FILL_OUT_FORM", "FILL THE FORM", "F"); |
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289 | |
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290 | aws->at("write"); |
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291 | aws->callback((AW_CB)ed_save_var_to_file, (AW_CL)AWAR_PARSED, (AW_CL)"submission/file"); |
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292 | aws->create_button("SAVE", "SAVE TO FILE", "S"); |
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293 | |
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294 | aws->button_length(20); |
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295 | aws->at("edit"); |
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296 | aws->callback(AW_POPUP, (AW_CL)create_calltexe_window, (AW_CL)"submission/source"); |
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297 | aws->create_button("EDIT_FORM", "EDIT FORM", "R"); |
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298 | |
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299 | aws->at("editresult"); |
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300 | aws->callback(AW_POPUP, (AW_CL)create_calltexe_window, (AW_CL)"submission/file"); |
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301 | aws->create_button("EDIT_SAVED", "EDIT SAVED", "S"); |
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302 | |
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303 | aws->at("privatlabel"); |
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304 | aws->create_button(0, "Your private data"); |
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305 | |
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306 | return aws; |
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307 | } |
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