1 | #Please insert up references in the next lines (line starts with keyword UP) |
---|
2 | UP arb.hlp |
---|
3 | UP glossary.hlp |
---|
4 | UP sp_info.hlp |
---|
5 | |
---|
6 | #Please insert subtopic references (line starts with keyword SUB) |
---|
7 | #SUB subtopic.hlp |
---|
8 | |
---|
9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
---|
10 | |
---|
11 | #************* Title of helpfile !! and start of real helpfile ******** |
---|
12 | TITLE Node Display Setup (NDS) |
---|
13 | |
---|
14 | OCCURRENCE ARB_NT/Tree/NDS |
---|
15 | ARB_GENE_MAP/Properties/NDS |
---|
16 | |
---|
17 | NOTES Read this text carefully. You won't need this function, but |
---|
18 | it offers many many new possibilities. |
---|
19 | |
---|
20 | DESCRIPTION Extracts data from the database entries of every species and |
---|
21 | builds a user-readable string from that data. |
---|
22 | |
---|
23 | This string can be used in many different functions, especially |
---|
24 | to show the species information at the tips of the tree or |
---|
25 | to show gene information at the tips of the genes in the |
---|
26 | gene map. |
---|
27 | |
---|
28 | It allows you to show part of the sequences, the full_name, |
---|
29 | the accession numbers right in the tree. You may even |
---|
30 | generate tables with all kinds of useful information, like |
---|
31 | probe match results for a set of oligo probes. |
---|
32 | |
---|
33 | Choose the 'NDS' item from the 'ARB_NT/Tree' menu to |
---|
34 | display the 'NDS' window. |
---|
35 | |
---|
36 | Enable field extraction: |
---|
37 | |
---|
38 | Press the 'LEAF' and/or 'GRP.' checkbox to activate the display of |
---|
39 | the corresponding 'field' entry at leafs and/or groups |
---|
40 | of the tree shown in the tree display area of the 'ARB_NT' window. |
---|
41 | |
---|
42 | Select 'FIELD': |
---|
43 | |
---|
44 | The order of the data shown at the tree nodes |
---|
45 | (from left to right) corresponds to that in the 'NDS' |
---|
46 | window (top to bottom). To select a 'field' enter the field name |
---|
47 | by hand or press the respective <S> button and select it |
---|
48 | from the popup-list. |
---|
49 | |
---|
50 | Press <RESCAN> there to display all fields, if fields have been deleted |
---|
51 | from the list by 'Species Information/Delete hide fields'. |
---|
52 | |
---|
53 | Define number of characters: |
---|
54 | |
---|
55 | Type the number of characters (including blanks) to be |
---|
56 | displayed to the 'WIDTH' subwindow. |
---|
57 | |
---|
58 | Display SRT/ACI: |
---|
59 | |
---|
60 | The 'Search and replace Tool (SRT)' and the 'ARB Command |
---|
61 | Interpreter (ACI)' in combination with 'Nodes Display |
---|
62 | Setup (NDS)' allows information to be extracted and/or modified |
---|
63 | from the 'Field' entries, before being displayed at the tree nodes. |
---|
64 | |
---|
65 | Press the corresponding <SRT> button to display the |
---|
66 | 'SRT_ACI_SELECT' window and select a predefined procedure |
---|
67 | (see LINK{acisrt.hlp}). |
---|
68 | |
---|
69 | The corresponding syntax (see LINK{srt.hlp}, LINK{aci.hlp} and |
---|
70 | LINK{reg.hlp}) is displayed in the 'ACI SRT PROGRAM' subwindow. |
---|
71 | The displayed strings can be modified by typing to the subwindows. |
---|
72 | |
---|
73 | |
---|
74 | NOTES Strings generated using 'SRT' or 'ACI' and displayed at the |
---|
75 | nodes are not stored in the database. You can use |
---|
76 | the 'Modify fields of listed species'-menuentry in the |
---|
77 | 'Search & Query' window to do this. |
---|
78 | |
---|
79 | The width of the output is limited to 4000 characters. |
---|
80 | |
---|
81 | EXAMPLES None |
---|
82 | |
---|
83 | WARNINGS None |
---|
84 | |
---|
85 | BUGS None |
---|
86 | |
---|