Context Navigation

source: tags/arb-6.0.5/Makefile

Visit:

Last change on this file was 14803, checked in by westram, 8 years ago
reintegrates 'fix' into 'stable' ports arb-6.0 to ubuntu 16.04 adds: log:branches/fix@14800:14802 log:branches/gcc@12996,13001:13003,13005:13006,13010:13014,13016 log:trunk@13018,14798
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 65.7 KB

Line
1	# =============================================================== #
2	# #
3	# File : Makefile #
4	# #
5	# Institute of Microbiology (Technical University Munich) #
6	# http://www.arb-home.de/ #
7	# #
8	# =============================================================== #
9
10	# -----------------------------------------------------
11	# The ARB Makefile is aware of the following defines:
12	#
13	# CC C compiler (should be defined by OS)
14	# CXX C++ compiler (should be defined by OS)
15	#
16	# BUILDHOST_64=0/1 1=>compile on 64 bit platform (defaults to ARB_64)
17	# DEVELOPER=name special compilation (values: ANY,RELEASE,your name)
18	# OPENGL=0/1 whether OPENGL is available
19	#
20	# -----------------------------------------------------
21	# ARB Makefile and ARB source code are aware of the following defines:
22	#
23	# $(MACH) name of the machine (LINUX or DARWIN; see config.makefile)
24	# DEBUG compiles the DEBUG sections
25	# DEBUG_GRAPHICS all X-graphics are flushed immediately (for debugging)
26	# ARB_64=0/1 1=>compile 64 bit version
27	# UNIT_TESTS=0/1 1=>compile in unit tests and call them after build
28	# COVERAGE=0/1/2 compile in gcov support (useful together with UNIT_TESTS=1)
29	# 0=no, 1+2=compile in, 1=show
30	# STABS=0/1 force stabs format? (0 = "use default format")
31	#
32	# -----------------------------------------------------
33	# The ARB source code is aware of the following defines:
34	#
35	# NDEBUG doesn't compile the DEBUG sections
36	# DEVEL_$(DEVELOPER) developer-dependent flag (enables you to have private sections in code)
37	# DEVELOPER='ANY' (default setting) will be ignored
38	# configurable in config.makefile
39	#
40	# -----------------------------------------------------
41	# Read configuration
42	include config.makefile
43
44	# set defaults for variables commented out in config.makefile:
45	ifndef DARWIN
46	DARWIN:=0
47	endif
48	ifndef LINUX
49	LINUX:=0
50	endif
51	ifndef DEBIAN
52	DEBIAN:=0
53	endif
54	ifndef REDHAT
55	REDHAT:=0
56	endif
57	ifndef ARB_64
58	ARB_64=1#default to 64bit
59	endif
60
61	# compiler settings:
62	ifneq ($(CC),use__A_CC__instead_of__CC)
63
64	A_CC:=$(CC)# compile C
65	A_CXX:=$(CXX)# compile C++
66
67	# uncomment to ensure no submakefile uses CC and CXX directly
68	override CC:=use__A_CC__instead_of__CC
69	override CXX:=use__A_CXX__instead_of__CXX
70
71	endif
72
73	export CC CXX A_CC A_CXX
74
75	ifeq ($(LD_LIBRARY_PATH),'')
76	LD_LIBRARY_PATH:=${ARBHOME}/lib
77	endif
78
79	ifeq ($(DARWIN),1)
80	LD_LIBRARY_PATH:=${ARBHOME}/lib
81	endif
82
83	# store LD_LIBRARY_PATH to circumvent SIP restrictions:
84	ARBBUILD_LIBRARY_PATH:=$(LD_LIBRARY_PATH)
85
86	FORCEMASK = umask 002
87	NODIR=--no-print-directory
88
89	SED:=$(ARBHOME)/SH/arb_sed
90	READLINK:=$(ARBHOME)/SH/arb_readlink
91
92	# ---------------------- compiler version detection
93
94	# supported gcc versions:
95	ALLOWED_gcc_VERSIONS=\
96	4.3.1 4.3.2 4.3.3 4.3.4 \
97	4.4.1 4.4.3 4.4.5 4.4.6 4.4.7 \
98	4.5.2 \
99	4.6.1 4.6.2 4.6.3 4.6.4 \
100	4.7.1 4.7.2 4.7.3 \
101	4.8.0 4.8.1 4.8.2 4.8.3 4.8.4 4.8.5 \
102	4.9.0 4.9.1 4.9.2 4.9.3 \
103	5.1.0 5.2.0 5.3.0 5.3.1 \
104
105
106	# ----------------------
107
108	COMPILER_INFO:=$(shell SOURCE_TOOLS/arb_compiler_version.pl $(A_CXX))
109	COMPILER_NAME:=$(word 1,$(COMPILER_INFO))
110	COMPILER_VERSION:=$(word 2,$(COMPILER_INFO))
111
112	USE_CLANG:=0
113	ifneq ($(COMPILER_NAME),gcc)
114	ifeq ($(COMPILER_NAME),clang)
115	USE_CLANG:=1
116	else
117	$(error failed to detect COMPILER_NAME (got '$(COMPILER_NAME)', expected 'clang' or 'gcc'))
118	endif
119	endif
120
121	ifeq ($(USE_CLANG),1)
122	# accept all clang versions:
123	ALLOWED_COMPILER_VERSIONS=$(COMPILER_VERSION)
124	else
125	ALLOWED_COMPILER_VERSIONS=$(ALLOWED_gcc_VERSIONS)
126	endif
127
128	COMPILER_VERSION_ALLOWED=$(strip $(subst ___,,$(foreach version,$(ALLOWED_COMPILER_VERSIONS),$(findstring ___$(version)___,___$(COMPILER_VERSION)___))))
129
130	#---------------------- split gcc version
131
132	SPLITTED_VERSION:=$(subst ., ,$(COMPILER_VERSION))
133
134	USE_GCC_MAJOR:=$(word 1,$(SPLITTED_VERSION))
135	USE_GCC_MINOR:=$(word 2,$(SPLITTED_VERSION))
136	USE_GCC_PATCHLEVEL:=$(word 3,$(SPLITTED_VERSION))
137
138	USE_GCC_452_OR_HIGHER:=
139	USE_GCC_47_OR_HIGHER:=
140	USE_GCC_48_OR_HIGHER:=
141
142	ifeq ($(USE_CLANG),0)
143	ifeq ($(USE_GCC_MAJOR),4)
144	ifeq ($(USE_GCC_MINOR),5)
145	ifneq ('$(findstring $(USE_GCC_PATCHLEVEL),23456789)','')
146	USE_GCC_452_OR_HIGHER:=yes
147	endif
148	else
149	ifneq ('$(findstring $(USE_GCC_MINOR),6789)','')
150	USE_GCC_452_OR_HIGHER:=yes
151	ifneq ($(USE_GCC_MINOR),6)
152	USE_GCC_47_OR_HIGHER:=yes
153	ifneq ($(USE_GCC_MINOR),7)
154	USE_GCC_48_OR_HIGHER:=yes
155	endif
156	endif
157	endif
158	endif
159	else
160	USE_GCC_452_OR_HIGHER:=yes
161	USE_GCC_47_OR_HIGHER:=yes
162	USE_GCC_48_OR_HIGHER:=yes
163	endif
164	endif
165
166	#---------------------- define special directories for non standard builds
167
168	ifeq ($(DARWIN),1)
169	OSX_FW:=/System/Library/Frameworks
170	OSX_FW_OPENGL:=$(OSX_FW)/OpenGL.framework/Versions/A/Libraries
171	OSX_FW_GLUT:=$(OSX_FW)/GLUT.framework/Versions/A/Libraries
172	OSX_FW_IMAGEIO:=$(OSX_FW)/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources
173	endif
174
175	#----------------------
176
177	ifeq ($(DARWIN),1)
178	LINK_STATIC=1# link static
179	else
180	LINK_STATIC=0# link dynamically
181	# LINK_STATIC=1# link static (testing only)
182	endif
183
184	shared_cflags :=# flags for shared lib compilation
185	lflags :=# linker flags
186	clflags :=# linker flags (when passed through gcc)
187	extended_warnings :=# warning flags for C and C++-compiler
188	extended_cpp_warnings :=# warning flags for C++-compiler only
189
190
191	ifeq ($(DEBUG),0)
192	dflags := -DNDEBUG# defines
193	ifeq ($(USE_CLANG),1)
194	cflags := -O3# compiler flags (C and C++)
195	else
196	cflags := -O4# compiler flags (C and C++)
197	lflags += -O2# linker flags
198	clflags += -Wl,-O2# passthrough linker flags
199	endif
200	endif
201
202	ifeq ($(DEBIAN),1)
203	lflags += -rpath=/usr/lib/arb/lib -z relro
204	clflags += -Wl,-rpath=/usr/lib/arb/lib -Wl,-z,relro
205	endif
206
207	ifeq ($(DEBUG),1)
208	dflags := -DDEBUG
209
210	gdb_common := -g -g3 -ggdb -ggdb3
211
212	ifeq ($(STABS),1)
213	cflags := -O0 $(gdb_common) -gstabs+ # using stabs+ (enable this for bigger debug session: debugs inlines, quick var inspect, BUT valgrind stops working :/)
214	else
215	cflags := -O0 $(gdb_common) # (using dwarf - cant debug inlines here, incredible slow on showing variable content)
216	endif
217
218	# cflags := -O0 $(gdb_common) -gdwarf-3 # (specify explicit dwarf format)
219	# cflags := -O0 $(gdb_common) -gstabs # using stabs (same here IIRC)
220	# cflags := -O2 $(gdb_common) # use this for callgrind (force inlining)
221
222	ifeq ($(DARWIN),0)
223	lflags += -g
224	clflags += -Wl,-g
225	endif
226
227	# control how much you get spammed
228	# (please do not change default in SVN, use developer specific setting as below)
229	POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl
230	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --original# dont modify compiler output
231	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --hide-Noncopyable-advices
232	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --show-useless-Weff++
233	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --no-warnings
234	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --only-first-error
235	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --no-warnings --only-first-error
236	ifeq ($(DEVELOPER),ELMAR)
237	POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --only-first-error
238	endif
239
240
241	# Enable extra warnings
242	extended_warnings :=
243	extended_cpp_warnings :=
244
245	# C and C++
246	extended_warnings += -Wwrite-strings -Wunused -Wno-aggregate-return -Wshadow
247
248	# C++ only
249	extended_cpp_warnings += -Wnon-virtual-dtor -Wreorder -Wpointer-arith -Wdisabled-optimization -Wmissing-format-attribute
250	extended_cpp_warnings += -Wctor-dtor-privacy# < gcc 3
251	# extended_cpp_warnings += -Wfloat-equal# gcc 3.0
252
253	# ------- above only warnings available in 3.0
254
255	ifneq ('$(COMPILER_VERSION)','4.7.3') # g++ crashes on GenomeImport.cxx when -Weffc++ is active (bug reported)
256	extended_cpp_warnings += -Weffc++# gcc 3.0.1
257	endif
258	extended_cpp_warnings += -Wmissing-noreturn# gcc 3.0.2
259	# extended_cpp_warnings += -Wold-style-cast# gcc 3.0.4 (warn about 28405 old-style casts)
260	extended_cpp_warnings += -Winit-self# gcc 3.4.0
261	extended_cpp_warnings += -Wstrict-aliasing# gcc 3.4
262	extended_cpp_warnings += -Wextra# gcc 3.4.0
263	ifeq ('$(USE_GCC_452_OR_HIGHER)','yes')
264	extended_cpp_warnings += -Wlogical-op# gcc 4.5.2
265	endif
266
267	ifeq ($(DEBUG_GRAPHICS),1)
268	dflags += -DDEBUG_GRAPHICS
269	endif
270	endif
271
272	#---------------------- turn off clang bogus warnings
273
274	ifeq ($(USE_CLANG),1)
275	# -Wmismatched-tags warns about struct/class mismatch in forward declarations (which is explicitely allowed)
276	# -Wchar-subscripts reports too many bogus warnings for "array['x']" (when 'x' is known to be in range [0..128])
277	# -Wunused-private-field report too many false positives (currently ~ 2 of 3)
278	# -Wstring-plus-int warns about common ARB coding practice
279	# -Wgnu-static-float-init warns about accepted GNU extension
280	extended_cpp_warnings += -Wno-mismatched-tags -Wno-char-subscripts -Wno-unused-private-field -Wno-string-plus-int -Wno-gnu-static-float-init
281	endif
282
283	#---------------------- developer
284
285	ifneq ($(DEVELOPER),ANY) # ANY=default setting (skip all developer specific code)
286	dflags += -DDEVEL_$(DEVELOPER)# activate developer/release specific code
287	endif
288
289	ifndef SHOWTODO
290	ifeq ($(DEVELOPER),RALF)
291	SHOWTODO:=1
292	else
293	SHOWTODO:=0
294	endif
295	endif
296	ifeq ($(SHOWTODO),1)
297	dflags += -DWARN_TODO# activate "TODO" warnings
298	endif
299
300	#---------------------- 32 or 64 bit
301
302	ifndef BUILDHOST_64
303	BUILDHOST_64:=$(ARB_64)# assume build host is same as version (see config.makefile)
304	endif
305
306	cross_cflags:=
307	cross_lflags:=
308	cross_clflags:=
309
310	ifeq ($(ARB_64),1)
311	dflags += -DARB_64 #-fPIC
312	shared_cflags += -fPIC
313
314	ifeq ($(BUILDHOST_64),1)
315	# build 64-bit ARB version on 64-bit host
316	CROSS_LIB:=# empty = autodetect below
317	ifeq ($(DARWIN),1)
318	cross_cflags += -arch x86_64
319	cross_lflags += -arch x86_64
320	cross_clflags += -arch x86_64
321	endif
322	else
323	# build 64-bit ARB version on 32-bit host
324	CROSS_LIB:=/lib64
325	cross_cflags += -m64
326	cross_lflags += -m64 -m elf_x86_64
327	cross_clflags += -m64 -Wl,-m64,-m,elf_x86_64
328	endif
329	else
330	ifeq ($(BUILDHOST_64),1)
331	# build 32-bit ARB version on 64-bit host
332	CROSS_LIB:=# empty = autodetect below
333	cross_cflags += -m32
334	cross_lflags += -m32 -m elf_i386
335	cross_clflags += -m32 -Wl,-m32,-m,elf_i386
336	else
337	# build 32-bit ARB version on 32-bit host
338	CROSS_LIB:=/lib
339	endif
340	endif
341
342	cflags += $(cross_cflags)
343	lflags += $(cross_lflags)
344	clflags += $(cross_clflags)
345
346	ifeq ('$(CROSS_LIB)','')
347	# autodetect libdir
348	ifeq ($(ARB_64),1)
349	CROSS_LIB:=$(shell (test -d /lib64 && echo lib64) \|\| echo lib)
350	else
351	CROSS_LIB:=$(shell (test -d /lib32 && echo lib32) \|\| echo lib)
352	endif
353	endif
354
355	#---------------------- unit tests
356
357	ifndef UNIT_TESTS
358	UNIT_TESTS=0#default is "no tests"
359	endif
360	ifeq ($(UNIT_TESTS),1)
361	dflags += -DUNIT_TESTS
362	UNIT_TESTER_LIB=UNIT_TESTER/UNIT_TESTER.a
363	else
364	UNIT_TESTER_LIB=
365	endif
366
367	#---------------------- use gcov
368
369	ifndef COVERAGE
370	COVERAGE=0#default is "no"
371	endif
372	ifneq ($(COVERAGE),0)
373	GCOVFLAGS=-ftest-coverage -fprofile-arcs
374	cflags += $(GCOVFLAGS)
375	EXECLIBS=-lgcov
376	else
377	GCOVFLAGS=
378	EXECLIBS=
379	endif
380
381	#---------------------- other flags
382
383	dflags += -D$(MACH) # define machine
384
385	ifeq ($(DARWIN),1)
386	shared_cflags += -fno-common
387	else
388	dflags += $(shell getconf LFS_CFLAGS)
389	endif
390
391	cflags += -pipe
392	cflags += -fmessage-length=0# don't wrap compiler output
393	cflags += -fshow-column# show columns
394	cflags += -funit-at-a-time
395	cflags += -fPIC
396	cflags += -fno-common# link all global data into one namespace
397	cflags += -fstrict-aliasing# gcc 3.4
398	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
399	cflags += -fno-diagnostics-show-caret#gcc 4.8 (4.7.?)
400	endif
401	#cflags += -save-temps# uncomment to see preprocessor output
402
403	#---------------------- X11 location
404
405	ifeq ($(DARWIN),1)
406	XHOME:=$(PREFIX)
407	else
408	ifeq ($(DEBIAN),1)
409	XHOME:=$(PREFIX)
410	else
411	XHOME:=/usr/X11R6
412	endif
413	endif
414
415	XINCLUDES:=-I$(XHOME)/include
416	ifeq ($(DARWIN),1)
417	XINCLUDES += -I$(OSX_FW)/GLUT.framework/Headers -I$(OSX_FW)/OpenGL.framework/Headers -I$(OSX_SDK)/usr/include/krb5
418
419	XLIBS := -L$(XHOME)/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
420	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGL.dylib:$(OSX_FW_OPENGL)/libGL.dylib
421	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGLU.dylib:$(OSX_FW_OPENGL)/libGLU.dylib
422	else
423	XLIBS:=-L$(XHOME)/$(CROSS_LIB) -lXm -lXpm -lXt -lXext -lX11
424	endif
425
426	#---------------------- open GL
427
428	ifeq ($(OPENGL),1)
429	cflags += -DARB_OPENGL # activate OPENGL code
430	GL := gl # this is the name of the OPENGL base target
431	GL_LIB_SYS := -lGL -lGLU
432	GL_LIB_ARB := -L$(ARBHOME)/GL/glAW -lglAW
433
434	ifeq ($(DARWIN),1)
435	GL_LIB_SYS += -lpthread
436	endif
437
438	GL_PNGLIBS_ARB := -L$(ARBHOME)/GL/glpng -lglpng_arb
439	GL_PNGLIBS_SYS := -lpng
440
441	GLEWLIB := -lGLEW -lGLw
442	ifeq ($(DARWIN),1)
443	GLUTLIB := -glut
444	else
445	GLUTLIB := -lglut
446	endif
447
448	GL_LIBS_SYS := $(GL_LIB_SYS) $(GL_PNGLIBS_SYS) $(GLEWLIB) $(GLUTLIB)
449	GL_LIBS_ARB := $(GL_LIB_ARB) $(GL_PNGLIBS_ARB)
450
451	RNA3D_LIB := RNA3D/RNA3D.a
452
453	else
454
455	GL_LIBS_ARB:=# no opengl -> no libs
456	GL_LIBS_SYS:=# no opengl -> no libs
457	GL:=# don't build ARB openGL libs
458
459	RNA3D_LIB :=
460
461	endif
462
463	RNA3D_LIB_4_DEPENDS := RNA3D/RNA3D.a
464
465	GL_LIBS:=$(GL_LIBS_ARB) $(GL_LIBS_SYS)
466
467	#---------------------- tiff lib:
468
469	TIFFLIBS := -ltiff
470
471	#---------------------- glib:
472
473	ARB_NEEDED_GLIB=glib-2.0
474
475	ARB_GLIB_INCLUDE:=$(strip $(shell pkg-config --cflags $(ARB_NEEDED_GLIB)))
476	ARB_GLIB_LIBS:=$(strip $(shell pkg-config --libs $(ARB_NEEDED_GLIB)))
477
478	#---------------------- basic libs:
479
480	SYSLIBS:=
481
482	ifeq ($(DARWIN),1)
483	SYSLIBS += -lstdc++
484	else
485	SYSLIBS += -lm $(ARB_GLIB_LIBS)
486	endif
487
488	#---------------------- include symbols?
489
490	ifeq ($(TRACESYM),1)
491	ifeq ($(USE_CLANG),0)
492	cflags += -rdynamic
493	lflags += --export-dynamic
494	clflags += -rdynamic -Wl,--export-dynamic
495	endif
496	endif
497
498	#---------------------- system dependent commands
499
500	ifeq ($(DARWIN),1)
501	TIME:=gtime
502	else
503	TIME:=/usr/bin/time
504	endif
505
506	# -------------------------------------------------------------------------
507	# Don't put any machine/version/etc conditionals below!
508	# (instead define variables above)
509	# -------------------------------------------------------------------------
510
511	cflags += -W -Wall $(dflags) $(extended_warnings)
512	cxxflags := $(extended_cpp_warnings)
513
514	# add CFLAGS + CPPFLAGS from environment for DEBIAN build
515	ifeq ($(DEBIAN),1)
516	cflags := $(CFLAGS) $(cflags)
517	cxxflags += $(CPPFLAGS)
518	endif
519
520	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
521	cxxflags += -std=gnu++11# see also TEMPLATES/cxxforward.h@USE_Cxx11
522	else
523	# only use for gcc versions between 4.3 and <4.7 (4.7++ adds -Wc++11-compat above)
524	HAVE_GNUPP0X=`SOURCE_TOOLS/requireVersion.pl 4.3 $(COMPILER_VERSION)`
525	ifeq ($(HAVE_GNUPP0X),1)
526	# ensure compatibility with upcoming C++ standard
527	cxxflags += -std=gnu++0x
528	endif
529	endif
530
531	LINK_STATIC_LIB := ld $(lflags) -r -o# link static lib
532	LINK_EXECUTABLE := $(A_CXX) $(clflags) -o# link executable (c++)
533
534	ifeq ($(LINK_STATIC),1)
535	SHARED_LIB_SUFFIX = a# static lib suffix
536	LINK_SHARED_LIB := $(LINK_STATIC_LIB)
537	else
538	SHARED_LIB_SUFFIX = so# shared lib suffix
539	LINK_SHARED_LIB := $(A_CXX) $(clflags) -shared $(GCOVFLAGS) -o# link shared lib
540	endif
541
542	# delete variables unused below
543	lflags:=
544	clflags:=
545
546	# other used tools
547	MAKEDEPEND_PLAIN = makedepend
548	MAKEDEPEND = $(FORCEMASK);$(MAKEDEPEND_PLAIN)
549
550	#SEP:=--------------------------------------------------------------------------------
551	SEP=[`date +%M:%S.%N`] ------------------------------------------------
552	# to analyse timings run
553	# make -j9 clean; make -j9 all \| grep '^\[' \| sort
554	# make -j9 "TIMED_TARGET=perl" clean_timed_target \| grep '^\[' \| sort
555
556	CORE_LIB=-lCORE
557	ARBDB_LIB=-lARBDB $(CORE_LIB)
558	LIBS = $(ARBDB_LIB) $(SYSLIBS)
559
560	GUI_LIBS_PREFIX:=
561	ifeq ($(DARWIN),1)
562	# this seem to be added at wrong place, since opengl is only needed to link EDIT4
563	GUI_LIBS_PREFIX:=-framework GLUT -framework OpenGL
564	endif
565
566	GUI_LIBS=$(GUI_LIBS_PREFIX) $(LIBS) -lAWT -lWINDOW
567	GUI_LIBS+=$(XLIBS)
568
569	LIBPATH = -L$(ARBHOME)/lib
570
571	DEST_LIB = lib
572	DEST_BIN = bin
573
574	CC_INCLUDES := -I. -I$(ARBHOME)/INCLUDE $(XINCLUDES) $(ARB_GLIB_INCLUDE)
575	CXX_INCLUDES := $(CC_INCLUDES)
576	MAKEDEPENDFLAGS := -- -DARB_OPENGL -DUNIT_TESTS -D__cplusplus -I. -Y$(ARBHOME)/INCLUDE
577
578	# -------------------------------
579	# old PTSERVER or PTPAN?
580
581	ifeq ($(PTPAN),1)
582	# PTPAN only libs
583	ARCHS_PT_SERVER = \
584	ptpan/PROBE.a
585	else
586	ifeq ($(PTPAN),2)
587	# special mode to compile both servers (developers only!)
588	ARCHS_PT_SERVER = \
589	ptpan/PROBE.a \
590	PROBE/PROBE.a
591	ARCHS_PT_SERVER_LINK = PROBE/PROBE.a# default to old ptserver
592	else
593	# PT-server only libs
594	ARCHS_PT_SERVER = \
595	PROBE/PROBE.a
596	endif
597	endif
598
599	ifndef ARCHS_PT_SERVER_LINK
600	ARCHS_PT_SERVER_LINK = $(ARCHS_PT_SERVER)
601	endif
602
603	# ---------------------------------------
604	# wrap main()
605
606	use_ARB_main=$(ARBHOME)/SOURCE_TOOLS/arb_main_cpp.o
607	use_ARB_main_C=$(ARBHOME)/SOURCE_TOOLS/arb_main_c.o
608
609	# -----------------------------------------
610	# export variables to submakefiles
611
612	include SOURCE_TOOLS/export2sub
613
614	# do not define (exported) variables below this point
615
616	# -------------------------
617	# Main arb targets:
618	# -------------------------
619
620	first_target:
621	$(MAKE) checks
622	@echo $(SEP)
623	@echo 'Main targets:'
624	@echo ''
625	@echo ' all - Compile ARB + TOOLs + and copy shared libs + link foreign software'
626	@echo ' (That is most likely the target you want)'
627	@echo ''
628	@echo ' clean - remove generated files ("SUBDIR/SUBDIR.clean" to clean only SUBDIR)'
629	@echo ' rebuild - clean + all'
630	@echo ' relink - remove all binaries and relink them from objects'
631	@echo ''
632	@echo 'Some often used sub targets (make all makes them all):'
633	@echo ''
634	@echo ' arb - Just compile ARB (but none of the integrated tools)'
635	@echo ' menus - create lib/gde/arb.menu from GDEHELP/ARB_GDEmenus.source'
636	@echo ' perl - Compile the PERL XSUBS into lib/ARB.so and create links in lib to perl'
637	@echo ' binlink - Create all links in the bin directory'
638	@echo ''
639	@echo 'Development targets:'
640	@echo ''
641	@echo ' depends - create or update dependencies ("SUBDIR/SUBDIR.depends" to update only SUBDIR)'
642	@echo ' proto - create or update prototypes ("SUBDIR/SUBDIR.proto" to update only SUBDIR)'
643	@echo ' tags - create tags for xemacs'
644	@echo ' show - show available shortcuts (AKA subtargets)'
645	@echo ' up - shortcut for depends+proto+tags'
646	ifeq ($(UNIT_TESTS),1)
647	@echo ' ut - only run tests'
648	endif
649	@echo ' modified - rebuild files modified in svn checkout (does touch)'
650	@echo ' touch - touch files modified in svn checkout'
651	@echo ''
652	@echo 'Internal maintenance:'
653	@echo ''
654	@echo ' relinfo - show help on release targets'
655	@echo ' tarfile - make rebuild and create arb version tarfile ("tarfile_quick" to skip rebuild)'
656	@echo ' save - save all basic ARB sources into arbsrc_DATE ("savetest" to check filelist)'
657	@echo ' patch - save svn diff to patchfile'
658	@echo ' source_doc - create doxygen documentation'
659	@echo ' relocated - rebuild partly (use when you have relocated ARBHOME)'
660	@echo ' check_res - check ressource usage'
661	@echo ' dep_graph - Build dependency graphs'
662	@echo ' clean_cov - Clean coverage results'
663	@echo ''
664	@echo ' post_commit_check - Checks whether'
665	@echo ' * main make targets work,'
666	@echo ' * dependencies and prototypes are up to date,'
667	@echo ' * SVN-controlled files remain unaffected by called targets and'
668	@echo ' * all generated files are ignored.'
669	@echo ' (has to be called in a clean SVN checkout)'
670	@echo $(SEP)
671	@echo ''
672
673	relinfo:
674	@echo ''
675	@echo $(SEP)
676	@echo 'Release targets:'
677	@echo ''
678	@echo ' inc_candi - increase RC candidate-number (only possible in "rc" branch, not needed for RC1)'
679	@echo ' inc_patch - increase release patchlevel (only possible in "stable" branch)'
680	@echo ' inc_minor - increase minor version number (only possible in "trunk")'
681	@echo ' inc_major - increase MAJOR version number (only possible in "trunk")'
682	@echo ''
683	@echo ' show_version - show version tag'
684	@echo ''
685	@echo $(SEP)
686	@echo ''
687
688	# auto-generate config.makefile:
689
690	CONFIG_MAKEFILE_FOUND=$(wildcard config.makefile)
691
692	config.makefile : config.makefile.template
693	@echo --------------------------------------------------------------------------------
694	ifeq ($(strip $(CONFIG_MAKEFILE_FOUND)),)
695	@cp $< $@
696	@echo '$(ARBHOME)/$@:1: has been generated.'
697	@echo 'Please edit $@ to configure your system!'
698	@echo --------------------------------------------------------------------------------
699	@false
700	else
701	@echo '$(ARBHOME)/$<:1: is more recent than'
702	@echo '$(ARBHOME)/$@:1:'
703	@ls -al config.makefile*
704	@echo --------------------------------------------------------------------------------
705	@echo "Updating $@ (if this fails, check manually)"
706	SOURCE_TOOLS/update_config_makefile.pl
707	@echo "Sucessfully updated $@"
708	@echo --------------------------------------------------------------------------------
709	@ls -al config.makefile*
710	@echo --------------------------------------------------------------------------------
711	@echo "Diff to your old config.makefile:"
712	@echo --------------------------------------------------------------------------------
713	-diff $@.bak $@
714	@echo --------------------------------------------------------------------------------
715	endif
716
717	# check if everything is configured correctly
718
719	check_DEVELOPER:
720	ifndef DEVELOPER
721	@echo 'config.makefile:1: DEVELOPER not defined'
722	@false
723	endif
724
725	check_DEBUG:
726	ifndef dflags
727	@echo 'config.makefile:1: DEBUG has to be defined. Valid values are 0 and 1'
728	@false
729	endif
730
731	check_ARB_64:
732	ifndef ARB_64
733	@echo 'config.makefile:1: ARB_64 has to be defined. Valid values are 0 and 1'
734	@false
735	endif
736
737	# ---------------------------------------- check gcc version
738
739	check_same_GCC_VERSION:
740	$(ARBHOME)/SOURCE_TOOLS/check_same_compiler_version.pl $(COMPILER_NAME) $(COMPILER_VERSION_ALLOWED)
741
742	check_GCC_VERSION:
743	@echo 'Compiler version check:'
744	# see .@ALLOWED_gcc_VERSIONS
745	ifeq ('$(COMPILER_VERSION_ALLOWED)', '')
746	@echo " - Your compiler is '$(COMPILER_NAME)' version '$(COMPILER_VERSION)'"
747	@echo ' This version is not in the list of supported $(COMPILER_NAME)-versions:'
748	@$(foreach version,$(ALLOWED_COMPILER_VERSIONS),echo ' * $(version)';)
749	@echo ' - You may either ..'
750	@echo ' - add your version to ALLOWED_$(COMPILER_NAME)_VERSIONS in the Makefile and try it out or'
751	@echo ' - switch to one of the allowed versions (see arb_README_gcc.txt for installing'
752	@echo ' a different version of gcc)'
753	@echo ''
754	@false
755	else
756	@echo " - Supported $(COMPILER_NAME) version '$(COMPILER_VERSION_ALLOWED)' detected - fine!"
757	@echo ''
758	$(MAKE) check_same_GCC_VERSION
759
760	endif
761
762	#---------------------- check ARBHOME
763
764	# use arb_INSTALL.txt to determine whether ARBHOME points to correct directory
765	ARB_INSTALL_FOUND=$(wildcard $(ARBHOME)/arb_INSTALL.txt)
766
767	check_ARBHOME:
768	ifeq ($(strip $(ARB_INSTALL_FOUND)),)
769	@echo ------------------------------------------------------------
770	@echo "ARBHOME is set to '$(ARBHOME)'"
771	@echo "The environment variable ARBHOME has to point to the top arb source directory."
772	@echo "If you use bash enter:"
773	@echo " export ARBHOME='`pwd`'"
774	@echo ------------------------------------------------------------
775	@false
776	endif
777
778	ARB_PATH_SET=$(findstring $(ARBHOME)/bin,$(PATH))
779
780	check_PATH: check_ARBHOME
781	ifeq ($(strip $(ARB_PATH_SET)),)
782	@echo ------------------------------------------------------------
783	@echo "The environment variable PATH has to contain $(ARBHOME)/bin"
784	@echo "If you use bash enter:"
785	@echo ' export PATH=$$ARBHOME/bin:$$PATH'
786	@echo ------------------------------------------------------------
787	@false
788	endif
789
790	check_TOOLS:
791	@util/arb_check_build_env.pl \
792	"$(A_CC)" \
793	"$(A_CXX)" \
794	"$(MAKEDEPEND_PLAIN)" \
795	"$(LINK_SHARED_LIB)" \
796	"$(LINK_SHARED_LIB)" \
797
798
799	check_ENVIRONMENT : check_PATH check_TOOLS
800	@echo "-------------------- Environment [start]"
801	@echo "ARBHOME='$(ARBHOME)'"
802	@echo "PATH='$(PATH)'"
803	@echo "LD_LIBRARY_PATH='$(LD_LIBRARY_PATH)'"
804	@echo "-------------------- Environment [end]"
805
806	check_tabs: check_setup
807	ifeq ($(DEBUG),1)
808	@SOURCE_TOOLS/tabBrake.pl
809	endif
810
811	force_tab_check:
812	@touch -t 198001010000 SOURCE_TOOLS/stamp.tabBrake
813	@$(MAKE) check_tabs
814
815
816	# ---------------------
817
818	check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
819	@echo Your setup seems to be ok.
820
821	checks: check_setup check_tabs
822	@rm -f SOURCE_TOOLS/postcompile.sav
823
824
825	# end test section ------------------------------
826
827	# ---------------------------------------
828	# List of standard top level directories
829	#
830	# sub-makefiles have to define the targets
831	# - 'depends' and
832	# - 'clean'
833	#
834	# when adding new libs here, also add a dependency vs 'links' or 'links_non_perl' in .@DD_links_non_perl
835
836	ARCHS = \
837	$(ARCHS_PT_SERVER) \
838	AISC/AISC.a \
839	AISC_MKPTPS/AISC_MKPTPS.a \
840	ARBDB/libARBDB.a \
841	CORE/libCORE.a \
842	ARB_GDE/ARB_GDE.a \
843	AWT/libAWT.a \
844	AWTC/AWTC.a \
845	AWTI/AWTI.a \
846	CONSENSUS_TREE/CONSENSUS_TREE.a \
847	CONVERTALN/CONVERTALN.a \
848	DBSERVER/DBSERVER.a \
849	DIST/DIST.a \
850	EDIT4/EDIT4.a \
851	EISPACK/EISPACK.a \
852	GDE/GDE.a \
853	GENOM/GENOM.a \
854	GENOM_IMPORT/GENOM_IMPORT.a \
855	GL/GL.a \
856	ISLAND_HOPPING/ISLAND_HOPPING.a \
857	MERGE/MERGE.a \
858	MULTI_PROBE/MULTI_PROBE.a \
859	NALIGNER/NALIGNER.a \
860	NAMES/NAMES.a \
861	NAMES_COM/server.a \
862	NTREE/NTREE.a \
863	PARSIMONY/PARSIMONY.a \
864	PERLTOOLS/PERLTOOLS.a \
865	PHYLO/PHYLO.a \
866	PRIMER_DESIGN/PRIMER_DESIGN.a \
867	PROBE_COM/server.a \
868	PROBE_DESIGN/PROBE_DESIGN.a \
869	PROBE_SET/PROBE_SET.a \
870	READSEQ/READSEQ.a \
871	RNA3D/RNA3D.a \
872	RNACMA/RNACMA.a \
873	SECEDIT/SECEDIT.a \
874	SEQ_QUALITY/SEQ_QUALITY.a \
875	SERVERCNTRL/SERVERCNTRL.a \
876	SL/SL.a \
877	STAT/STAT.a \
878	TOOLS/TOOLS.a \
879	TREEGEN/TREEGEN.a \
880	UNIT_TESTER/UNIT_TESTER.a \
881	WETC/WETC.a \
882	WINDOW/libWINDOW.a \
883	XML/XML.a \
884
885	# -----------------------
886	# library packets
887
888	ARCHS_CLIENT_PROBE = PROBE_COM/client.a PROBE_COM/common.a
889	ARCHS_CLIENT_NAMES = NAMES_COM/client.a NAMES_COM/common.a
890
891	ARCHS_SERVER_PROBE = PROBE_COM/server.a $(ARCHS_CLIENT_PROBE)
892	ARCHS_SERVER_NAMES = NAMES_COM/server.a $(ARCHS_CLIENT_NAMES)
893
894	ARCHS_MAKEBIN = AISC_MKPTPS/AISC_MKPTPS.a AISC/AISC.a
895
896	# communication libs need aisc and aisc_mkpts:
897
898	AISC/AISC.dummy: proto_tools
899
900	comtools: AISC/AISC.dummy
901
902	ARCHS_SEQUENCE = \
903	SL/SEQUENCE/SEQUENCE.a \
904	SL/ALIVIEW/ALIVIEW.a \
905	SL/PRONUC/PRONUC.a \
906
907	ARCHS_TREE = \
908	$(ARCHS_SEQUENCE) \
909	SL/FILTER/FILTER.a \
910	SL/ARB_TREE/ARB_TREE.a \
911	SL/ROOTED_TREE/ROOTED_TREE.a \
912
913	# parsimony tree (used by NTREE, PARSIMONY, STAT(->EDIT4), DIST(obsolete!))
914	ARCHS_AP_TREE = \
915	$(ARCHS_TREE) \
916	SL/AP_TREE/AP_TREE.a \
917
918	# --------------------------------------------------------------------------------
919	# dependencies for linking shared libs
920
921	link_core: core
922	link_db: db link_core
923	link_aw: aw link_db
924	link_awt: awt link_aw
925
926	#***************************************************************************************
927	# Individual_Programs_Section
928	#***************************************************************************************
929
930	arbmainwrapper:
931	$(MAKE) -C SOURCE_TOOLS -r mainwrapper
932
933
934	#********************************* arb_ntree ************************************
935	NTREE = bin/arb_ntree
936	ARCHS_NTREE = \
937	NTREE/NTREE.a \
938	$(ARCHS_AP_TREE) \
939	ARB_GDE/ARB_GDE.a \
940	AWTC/AWTC.a \
941	AWTI/AWTI.a \
942	CONSENSUS_TREE/CONSENSUS_TREE.a \
943	GENOM/GENOM.a \
944	GENOM_IMPORT/GENOM_IMPORT.a \
945	MERGE/MERGE.a \
946	MULTI_PROBE/MULTI_PROBE.a \
947	PRIMER_DESIGN/PRIMER_DESIGN.a \
948	PROBE_DESIGN/PROBE_DESIGN.a \
949	SEQ_QUALITY/SEQ_QUALITY.a \
950	SERVERCNTRL/SERVERCNTRL.a \
951	SL/AW_NAME/AW_NAME.a \
952	SL/DB_UI/DB_UI.a \
953	SL/DB_SCANNER/DB_SCANNER.a \
954	SL/DB_QUERY/DB_QUERY.a \
955	SL/SEQIO/SEQIO.a \
956	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
957	SL/HELIX/HELIX.a \
958	SL/REGEXPR/REGEXPR.a \
959	SL/REFENTRIES/REFENTRIES.a \
960	SL/NDS/NDS.a \
961	SL/ITEMS/ITEMS.a \
962	SL/INSDEL/INSDEL.a \
963	SL/LOCATION/LOCATION.a \
964	SL/MACROS/MACROS.a \
965	SL/TRANSLATE/TRANSLATE.a \
966	SL/TREEDISP/TREEDISP.a \
967	SL/TREE_ADMIN/TREE_ADMIN.a \
968	SL/TREE_READ/TREE_READ.a \
969	SL/TREE_WRITE/TREE_WRITE.a \
970	STAT/STAT.a \
971	XML/XML.a \
972
973	$(NTREE): $(ARCHS_NTREE:.a=.dummy) link_awt
974	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NTREE) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
975	echo "$(SEP) Link $@"; \
976	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(EXECLIBS)" ; \
977	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(EXECLIBS) && \
978	echo "$(SEP) Link $@ [done]"; \
979	)
980
981	#********************************* arb_edit4 ************************************
982	EDIT4 = bin/arb_edit4
983
984	ARCHS_EDIT4 := \
985	EDIT4/EDIT4.a \
986	$(ARCHS_AP_TREE) \
987	ARB_GDE/ARB_GDE.a \
988	AWTC/AWTC.a \
989	ISLAND_HOPPING/ISLAND_HOPPING.a \
990	SECEDIT/SECEDIT.a \
991	SERVERCNTRL/SERVERCNTRL.a \
992	SL/AW_HELIX/AW_HELIX.a \
993	SL/AW_NAME/AW_NAME.a \
994	SL/FAST_ALIGNER/FAST_ALIGNER.a \
995	SL/ITEMS/ITEMS.a \
996	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
997	SL/HELIX/HELIX.a \
998	SL/TRANSLATE/TRANSLATE.a \
999	SL/MACROS/MACROS.a \
1000	SL/NDS/NDS.a \
1001	STAT/STAT.a \
1002	XML/XML.a \
1003
1004	ifeq ($(OPENGL),1)
1005	ARCHS_EDIT4 += RNA3D/RNA3D.a
1006	endif
1007
1008	LIBS_EDIT4 := $(GL_LIBS)
1009
1010	$(EDIT4): $(ARCHS_EDIT4:.a=.dummy) link_awt
1011	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_EDIT4) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1012	echo "$(SEP) Link $@"; \
1013	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4) $(EXECLIBS)" ; \
1014	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4) $(EXECLIBS) && \
1015	echo "$(SEP) Link $@ [done]"; \
1016	)
1017
1018	#********************************* arb_rnacma ************************************
1019	RNACMA = bin/arb_rnacma
1020	ARCHS_RNACMA = \
1021	RNACMA/RNACMA.a \
1022
1023	$(RNACMA) : $(ARCHS_RNACMA:.a=.dummy) link_db
1024	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_RNACMA) \|\| ( \
1025	echo "$(SEP) Link $@"; \
1026	echo "$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(LIBS) $(EXECLIBS)"; \
1027	$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(LIBS) $(EXECLIBS) && \
1028	echo "$(SEP) Link $@ [done]"; \
1029	)
1030
1031	#********************************* arb_wetc ************************************
1032	WETC = bin/arb_wetc
1033	ARCHS_WETC = \
1034	WETC/WETC.a \
1035	SL/HELIX/HELIX.a \
1036	SL/FILTER/FILTER.a \
1037	XML/XML.a \
1038
1039	$(WETC): $(ARCHS_WETC:.a=.dummy) link_awt
1040	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_WETC) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1041	echo "$(SEP) Link $@"; \
1042	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS) $(EXECLIBS)" ; \
1043	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS) $(EXECLIBS) && \
1044	echo "$(SEP) Link $@ [done]"; \
1045	)
1046
1047	#********************************* arb_dist ************************************
1048	DIST = bin/arb_dist
1049	ARCHS_DIST = \
1050	$(ARCHS_AP_TREE) \
1051	CONSENSUS_TREE/CONSENSUS_TREE.a \
1052	DIST/DIST.a \
1053	EISPACK/EISPACK.a \
1054	SERVERCNTRL/SERVERCNTRL.a \
1055	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1056	SL/HELIX/HELIX.a \
1057	SL/MATRIX/MATRIX.a \
1058	SL/MACROS/MACROS.a \
1059	SL/NDS/NDS.a \
1060	SL/ITEMS/ITEMS.a \
1061	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.a \
1062	XML/XML.a \
1063
1064	$(DIST): $(ARCHS_DIST:.a=.dummy) link_awt
1065	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DIST) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1066	echo "$(SEP) Link $@"; \
1067	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(EXECLIBS)" ; \
1068	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(EXECLIBS) && \
1069	echo "$(SEP) Link $@ [done]"; \
1070	)
1071
1072	#********************************* arb_pars ************************************
1073	PARSIMONY = bin/arb_pars
1074	ARCHS_PARSIMONY = \
1075	$(ARCHS_AP_TREE) \
1076	PARSIMONY/PARSIMONY.a \
1077	SERVERCNTRL/SERVERCNTRL.a \
1078	SL/AW_NAME/AW_NAME.a \
1079	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1080	SL/HELIX/HELIX.a \
1081	SL/MACROS/MACROS.a \
1082	SL/NDS/NDS.a \
1083	SL/ITEMS/ITEMS.a \
1084	SL/TRANSLATE/TRANSLATE.a \
1085	SL/TREEDISP/TREEDISP.a \
1086	XML/XML.a \
1087
1088	$(PARSIMONY): $(ARCHS_PARSIMONY:.a=.dummy) link_awt
1089	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PARSIMONY) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1090	echo "$(SEP) Link $@"; \
1091	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(EXECLIBS)" ; \
1092	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(EXECLIBS) && \
1093	echo "$(SEP) Link $@ [done]"; \
1094	)
1095
1096	#********************************* arb_convert_aln ************************************
1097	CONVERT_ALN = bin/arb_convert_aln
1098	ARCHS_CONVERT_ALN = \
1099	CONVERTALN/CONVERTALN.a \
1100
1101	$(CONVERT_ALN) : $(ARCHS_CONVERT_ALN:.a=.dummy) link_db
1102	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_CONVERT_ALN) $(use_ARB_main) \|\| ( \
1103	echo "$(SEP) Link $@"; \
1104	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(LIBS) $(EXECLIBS)"; \
1105	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(LIBS) $(EXECLIBS) && \
1106	echo "$(SEP) Link $@ [done]"; \
1107	)
1108
1109	#********************************* arb_treegen ************************************
1110
1111	TREEGEN = bin/arb_treegen
1112	ARCHS_TREEGEN = \
1113	TREEGEN/TREEGEN.a \
1114
1115	$(TREEGEN) : $(ARCHS_TREEGEN:.a=.dummy)
1116	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_TREEGEN) $(use_ARB_main_C) \|\| ( \
1117	echo "$(SEP) Link $@"; \
1118	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN) $(EXECLIBS)" ; \
1119	$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN) $(EXECLIBS) && \
1120	echo "$(SEP) Link $@ [done]"; \
1121	)
1122
1123	#********************************* arb_naligner ************************************
1124	NALIGNER = bin/arb_naligner
1125	ARCHS_NALIGNER = \
1126	NALIGNER/NALIGNER.a \
1127	SERVERCNTRL/SERVERCNTRL.a \
1128	SL/HELIX/HELIX.a \
1129
1130	$(NALIGNER): $(ARCHS_NALIGNER:.a=.dummy) link_db
1131	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NALIGNER) $(use_ARB_main) \|\| ( \
1132	echo "$(SEP) Link $@"; \
1133	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(LIBS) $(EXECLIBS)" ; \
1134	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(LIBS) $(EXECLIBS) && \
1135	echo "$(SEP) Link $@ [done]"; \
1136	)
1137
1138	#********************************* arb_phylo ************************************
1139	PHYLO = bin/arb_phylo
1140	ARCHS_PHYLO = \
1141	PHYLO/PHYLO.a \
1142	SL/HELIX/HELIX.a \
1143	SL/FILTER/FILTER.a \
1144	SL/MATRIX/MATRIX.a \
1145	SL/MACROS/MACROS.a \
1146	XML/XML.a \
1147
1148	$(PHYLO): $(ARCHS_PHYLO:.a=.dummy) link_awt
1149	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PHYLO) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1150	echo "$(SEP) Link $@"; \
1151	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS) $(EXECLIBS)" ; \
1152	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS) $(EXECLIBS) && \
1153	echo "$(SEP) Link $@ [done]"; \
1154	)
1155
1156	#***************************************************************************************
1157	# SERVER SECTION
1158	#***************************************************************************************
1159
1160	#********************************* arb_db_server ************************************
1161	DBSERVER = bin/arb_db_server
1162	ARCHS_DBSERVER = \
1163	DBSERVER/DBSERVER.a \
1164	SERVERCNTRL/SERVERCNTRL.a \
1165
1166	$(DBSERVER): $(ARCHS_DBSERVER:.a=.dummy) link_db
1167	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DBSERVER) $(ARBDB_LIB) $(use_ARB_main) \|\| ( \
1168	echo "$(SEP) Link $@"; \
1169	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS) $(EXECLIBS)" ; \
1170	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS) $(EXECLIBS) && \
1171	echo "$(SEP) Link $@ [done]"; \
1172	)
1173
1174	#********************************* arb_pt_server ************************************
1175	PROBE = bin/arb_pt_server
1176	ARCHS_PROBE_COMMON = \
1177	SERVERCNTRL/SERVERCNTRL.a \
1178	SL/HELIX/HELIX.a \
1179	SL/PTCLEAN/PTCLEAN.a \
1180
1181	ARCHS_PROBE_LINK = \
1182	$(ARCHS_PROBE_COMMON) \
1183	$(ARCHS_PT_SERVER_LINK) \
1184
1185	ARCHS_PROBE_DEPEND = \
1186	$(ARCHS_PROBE_COMMON) \
1187	$(ARCHS_PT_SERVER) \
1188
1189	$(PROBE): $(ARCHS_PROBE_DEPEND:.a=.dummy) link_db
1190	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) config.makefile $(use_ARB_main) \|\| ( \
1191	echo "$(SEP) Link $@"; \
1192	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_SERVER_PROBE) $(SYSLIBS) $(EXECLIBS)" ; \
1193	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_SERVER_PROBE) $(SYSLIBS) $(EXECLIBS) && \
1194	echo "$(SEP) Link $@ [done]"; \
1195	)
1196
1197	#********************************* arb_name_server ************************************
1198	NAMES = bin/arb_name_server
1199	ARCHS_NAMES = \
1200	NAMES/NAMES.a \
1201	SERVERCNTRL/SERVERCNTRL.a \
1202
1203	$(NAMES): $(ARCHS_NAMES:.a=.dummy) link_db
1204	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) $(use_ARB_main) \|\| ( \
1205	echo "$(SEP) Link $@"; \
1206	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS) $(EXECLIBS)" ; \
1207	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS) $(EXECLIBS) && \
1208	echo "$(SEP) Link $@ [done]"; \
1209	)
1210
1211	#********************************* SHARED LIBRARIES SECTION ************************************
1212
1213	prepare_libdir: addlibs
1214
1215	addlibs:
1216	(perl $(ARBHOME)/SOURCE_TOOLS/provide_libs.pl \
1217	"arbhome=$(ARBHOME)" \
1218	"opengl=$(OPENGL)" \
1219	"link_static=$(LINK_STATIC)" \
1220	)
1221
1222	#***************************************************************************************
1223	# Recursive calls to sub-makefiles
1224	#***************************************************************************************
1225
1226	%.depends:
1227	@cp -p $(@D)/Makefile $(@D)/Makefile.old # save old Makefile
1228	@$(MAKE) -C $(@D) -r \
1229	"AUTODEPENDS=1" \
1230	"MAIN=nothing" \
1231	"cflags=noCflagsHere_use_MAKEDEPENDFLAGS" \
1232	"cxxflags=noCxxflagsHere_use_MAKEDEPENDFLAGS" \
1233	depends
1234	@grep "^# DO NOT DELETE" $(@D)/Makefile >/dev/null
1235	@cat $(@D)/Makefile \
1236	\| SOURCE_TOOLS/fix_depends.pl "(from main)" \
1237	>$(@D)/Makefile.2
1238	@mv $(@D)/Makefile.old $(@D)/Makefile # restore old Makefile
1239	@$(ARBHOME)/SOURCE_TOOLS/mv_if_diff $(@D)/Makefile.2 $(@D)/Makefile # update Makefile if changed
1240
1241	%.proto:
1242	@$(MAKE) -C $(@D) \
1243	"AUTODEPENDS=0" \
1244	"MAIN=nothing" \
1245	"cflags=noCflags" \
1246	"cxxflags=noCxxflags" \
1247	proto
1248
1249	%.clean:
1250	@$(MAKE) -C $(@D) \
1251	"AUTODEPENDS=0" \
1252	"MAIN=nothing" \
1253	"cflags=noCflags" \
1254	"cxxflags=noCxxflags" \
1255	clean
1256
1257
1258	# stop wrong targets
1259	target_is_missing_lib_prefix:
1260	@echo "Error: Denied to build shared library target with missing 'lib'-prefix"
1261	false
1262
1263	ARBDB/ARBDB.dummy: target_is_missing_lib_prefix
1264	CORE/CORE.dummy: target_is_missing_lib_prefix
1265	AWT/AWT.dummy: target_is_missing_lib_prefix
1266	WINDOW/WINDOW.dummy: target_is_missing_lib_prefix
1267
1268	# rule to generate main target (normally a library):
1269	# @@@ check effect of setting LANG=C below
1270	%.dummy:
1271	@( export ID=$$$$; LANG=C; \
1272	(( \
1273	echo "$(SEP) Make $(@D)"; \
1274	$(MAKE) -C $(@D) -r \
1275	"AUTODEPENDS=1" \
1276	"MAIN=$(@F:.dummy=.a)" \
1277	"cflags=$(cflags) -DIN_ARB_$(subst /,_,$(@D))" \
1278	&& \
1279	echo "$(SEP) Make $(@D) [done]"; \
1280	) >$(@D).$$ID.log 2>&1 && (cat $(@D).$$ID.log;rm $(@D).$$ID.log)) \|\| (cat $(@D).$$ID.log;rm $(@D).$$ID.log;false))
1281
1282	# Additional dependencies for subtargets:
1283
1284	PROBE_COM/PROBE_COM.dummy : comtools
1285	NAMES_COM/NAMES_COM.dummy : comtools
1286
1287	com: PROBE_COM/PROBE_COM.dummy NAMES_COM/NAMES_COM.dummy
1288
1289	PROBE_COM/server.dummy:
1290	@echo Unwanted request to make target $<
1291	false
1292
1293	PROBE_COM/client.dummy:
1294	@echo Unwanted request to make target $<
1295	false
1296
1297	NAMES_COM/server.dummy:
1298	@echo Unwanted request to make target $<
1299	false
1300
1301	NAMES_COM/client.dummy:
1302	@echo Unwanted request to make target $<
1303	false
1304
1305
1306	ARBDB/libARBDB.dummy: links
1307	CORE/libCORE.dummy: links
1308
1309	PERLTOOLS/PERLTOOLS.dummy: core db
1310
1311	# all subdirs perl not depends on go here (ADD_links_non_perl)
1312	AWT/libAWT.dummy: links_non_perl
1313	AWTI/AWTI.dummy: links_non_perl
1314	CONSENSUS_TREE/CONSENSUS_TREE.dummy: links_non_perl
1315	CONVERTALN/CONVERTALN.dummy: links_non_perl
1316	DBSERVER/DBSERVER.dummy: links_non_perl
1317	DIST/DIST.dummy: links_non_perl
1318	EDIT4/EDIT4.dummy: links_non_perl genheaders com
1319	EISPACK/EISPACK.dummy: links_non_perl
1320	GDE/GDE.dummy: links_non_perl
1321	GENOM/GENOM.dummy: links_non_perl
1322	GENOM_IMPORT/GENOM_IMPORT.dummy: links_non_perl
1323	ISLAND_HOPPING/ISLAND_HOPPING.dummy: links_non_perl
1324	MERGE/MERGE.dummy: links_non_perl
1325	NTREE/NTREE.dummy: links_non_perl genheaders
1326	PARSIMONY/PARSIMONY.dummy: links_non_perl
1327	PHYLO/PHYLO.dummy: links_non_perl
1328	PRIMER_DESIGN/PRIMER_DESIGN.dummy: links_non_perl
1329	PROBE_SET/PROBE_SET.dummy: links_non_perl link_db
1330	READSEQ/READSEQ.dummy: links_non_perl
1331	RNACMA/RNACMA.dummy: links_non_perl header_libs
1332	SECEDIT/SECEDIT.dummy: links_non_perl
1333	SEQ_QUALITY/SEQ_QUALITY.dummy: links_non_perl
1334	SERVERCNTRL/SERVERCNTRL.dummy: links_non_perl com
1335	SL/ALIVIEW/ALIVIEW.dummy: links_non_perl
1336	SL/AP_TREE/AP_TREE.dummy: links_non_perl
1337	SL/ARB_TREE/ARB_TREE.dummy: links_non_perl
1338	SL/AW_HELIX/AW_HELIX.dummy: links_non_perl
1339	SL/DB_QUERY/DB_QUERY.dummy: links_non_perl
1340	SL/DB_SCANNER/DB_SCANNER.dummy: links_non_perl
1341	SL/DB_UI/DB_UI.dummy: links_non_perl
1342	SL/FAST_ALIGNER/FAST_ALIGNER.dummy: links_non_perl
1343	SL/FILTER/FILTER.dummy: links_non_perl
1344	SL/GUI_ALIVIEW/GUI_ALIVIEW.dummy: links_non_perl
1345	SL/HELIX/HELIX.dummy: links_non_perl
1346	SL/INSDEL/INSDEL.dummy: links_non_perl
1347	SL/ITEMS/ITEMS.dummy: links_non_perl
1348	SL/LOCATION/LOCATION.dummy: links_non_perl
1349	SL/MACROS/MACROS.dummy: links_non_perl
1350	SL/MATRIX/MATRIX.dummy: links_non_perl
1351	SL/NDS/NDS.dummy: links_non_perl
1352	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.dummy: links_non_perl
1353	SL/PRONUC/PRONUC.dummy: links_non_perl
1354	SL/PTCLEAN/PTCLEAN.dummy: links_non_perl link_db
1355	SL/REFENTRIES/REFENTRIES.dummy: links_non_perl
1356	SL/REGEXPR/REGEXPR.dummy: links_non_perl
1357	SL/ROOTED_TREE/ROOTED_TREE.dummy: links_non_perl
1358	SL/SEQIO/SEQIO.dummy: links_non_perl
1359	SL/SEQUENCE/SEQUENCE.dummy: links_non_perl
1360	SL/TRANSLATE/TRANSLATE.dummy: links_non_perl
1361	SL/TREE_ADMIN/TREE_ADMIN.dummy: links_non_perl
1362	SL/TREE_READ/TREE_READ.dummy: links_non_perl
1363	SL/TREE_WRITE/TREE_WRITE.dummy: links_non_perl
1364	SL/TREEDISP/TREEDISP.dummy: links_non_perl
1365	STAT/STAT.dummy: links_non_perl
1366	TREEGEN/TREEGEN.dummy: links_non_perl
1367	WETC/WETC.dummy: links_non_perl
1368	WINDOW/libWINDOW.dummy: links_non_perl
1369	XML/XML.dummy: links_non_perl
1370
1371	ifeq ($(OPENGL),1)
1372	GL/glAW/glAW.dummy: links_non_perl
1373	GL/glpng/glpng.dummy: links_non_perl
1374	GL/GL.dummy: GL/glAW/glAW.dummy GL/glpng/glpng.dummy
1375	RNA3D/RNA3D.dummy: links_non_perl gl
1376	endif
1377
1378	UNIT_TESTER/UNIT_TESTER.dummy: link_db \
1379	SERVERCNTRL/SERVERCNTRL.dummy \
1380
1381	TOOLS/TOOLS.dummy : links_non_perl link_db \
1382	SERVERCNTRL/SERVERCNTRL.dummy \
1383	SL/ROOTED_TREE/ROOTED_TREE.dummy \
1384	SL/TREE_WRITE/TREE_WRITE.dummy \
1385	SL/TREE_READ/TREE_READ.dummy \
1386	CONSENSUS_TREE/CONSENSUS_TREE.dummy \
1387	XML/XML.dummy \
1388
1389	AWTC/AWTC.dummy : com
1390
1391	NAMES/NAMES.dummy : com
1392	SL/AW_NAME/AW_NAME.dummy : com
1393
1394	PROBE/PROBE.dummy : com
1395	ptpan/PROBE.dummy : com
1396	MULTI_PROBE/MULTI_PROBE.dummy : com
1397	PROBE_DESIGN/PROBE_DESIGN.dummy : com
1398	NALIGNER/NALIGNER.dummy : com
1399
1400	ARB_GDE/ARB_GDE.dummy : proto_tools
1401
1402	compile_compatibility: SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.dummy
1403
1404	#***************************************************************************************
1405	# Short aliases to make targets
1406	#***************************************************************************************
1407
1408	show:
1409	@echo $(SEP)
1410	@echo 'Aliases for often needed targets:'
1411	@echo ''
1412	@echo ' executables:'
1413	@echo ''
1414	@echo ' nt arb_ntree'
1415	@echo ' e4 arb_edit4 (includes secedit)'
1416	@echo ' di arb_dist'
1417	@echo ' ph arb_phylo'
1418	@echo ' pa arb_parsimony'
1419	@echo ' tg arb_treegen'
1420	@echo ' ds arb_dbserver'
1421	@echo ' pt arb_pt_server'
1422	@echo ' na arb_name_server'
1423	@echo ''
1424	@echo ' libraries:'
1425	@echo ''
1426	@echo ' com communication libraries'
1427	@echo ' db ARB database'
1428	@echo ' aw GUI lib'
1429	@echo ' awt GUI toolkit'
1430	@echo ' awtc general purpose library'
1431	@echo ' awti import/export library'
1432	@echo ' mp multi probe library'
1433	@echo ' ge genome library'
1434	@echo ' pd probe design lib'
1435	@echo ' prd primer design lib'
1436	@echo ''
1437	@echo ' other targets:'
1438	@echo ''
1439	@echo ' help recompile help files'
1440	@echo ' tools make small tools used by arb'
1441	@echo ''
1442	@echo ' foreign targets:'
1443	@echo ''
1444	@echo ' gde GDE'
1445	@echo ' agde ARB_GDE'
1446	@echo ''
1447	@echo 'for other targets inspect $(ARBHOME)/Makefile'
1448	@echo ''
1449	@echo $(SEP)
1450
1451	source_doc:
1452	@echo "Remove some links (doxygen crashes otherwise):"
1453	find . \( -name "AISC" -o -name "C" -o -name "GDEHELP" \) -type l -exec rm {} \;
1454	doxygen 2>&1 1>/dev/null
1455	$(MAKE) forcelinks
1456
1457	dep_graph:
1458	@echo "Building some dependency graphs"
1459	SOURCE_TOOLS/dependency_graphs.pl
1460
1461	help: HELP_SOURCE/HELP_SOURCE.dummy
1462
1463	HELP_SOURCE/HELP_SOURCE.dummy: link_core xml menus
1464
1465	db: ARBDB/libARBDB.dummy
1466	core: CORE/libCORE.dummy
1467	aw: WINDOW/libWINDOW.dummy
1468	awt: AWT/libAWT.dummy
1469	awtc: AWTC/AWTC.dummy
1470	awti: AWTI/AWTI.dummy
1471
1472	mp: MULTI_PROBE/MULTI_PROBE.dummy
1473	mg: MERGE/MERGE.dummy
1474	ge: GENOM/GENOM.dummy
1475	prd: PRIMER_DESIGN/PRIMER_DESIGN.dummy
1476
1477	nt: menus $(NTREE)
1478
1479	nal: $(NALIGNER)
1480
1481	di: $(DIST)
1482	ph: $(PHYLO)
1483	pa: $(PARSIMONY)
1484	tg: $(TREEGEN)
1485
1486	ifeq ($(OPENGL),1)
1487	3d: RNA3D/RNA3D.dummy
1488	gl: GL/GL.dummy
1489	else
1490	noopengl:
1491	@echo "invalid target for OPENGL=0"
1492	3d: noopengl
1493	gl: noopengl
1494	endif
1495
1496	SL/SL.dummy: com
1497
1498	ds: $(DBSERVER)
1499	pt: $(PROBE)
1500	pst: PROBE_SET/PROBE_SET.dummy
1501	pd: PROBE_DESIGN/PROBE_DESIGN.dummy
1502	na: $(NAMES)
1503	sq: SEQ_QUALITY/SEQ_QUALITY.dummy
1504	cma: $(RNACMA)
1505
1506	sec: SECEDIT/SECEDIT.dummy
1507
1508	e4: $(EDIT4) readseq menus
1509
1510	gi: GENOM_IMPORT/GENOM_IMPORT.dummy
1511	wetc: $(WETC)
1512
1513	xml: XML/XML.dummy
1514	xmlin: XML_IMPORT/XML_IMPORT.dummy# broken
1515	stat: STAT/STAT.dummy $(NTREE) $(EDIT4)
1516	fa: SL/FAST_ALIGNER/FAST_ALIGNER.dummy
1517
1518	#********************************************************************************
1519
1520	up_by_remake: depends proto
1521
1522	up: up_by_remake tags valgrind_update
1523
1524	#********************************************************************************
1525
1526	touch:
1527	SOURCE_TOOLS/touch_modified.pl
1528
1529	modified: touch
1530	$(MAKE) all
1531
1532	#********************************************************************************
1533
1534	libdepends:
1535	$(MAKE) -C "SOURCE_TOOLS" \
1536	"RNA3D_LIB=$(RNA3D_LIB_4_DEPENDS)" \
1537	libdepends
1538
1539	#********************************************************************************
1540
1541	# create generated headers:
1542	genheaders: TEMPLATES/TEMPLATES.dummy
1543
1544	clrdotdepends:
1545	-rm PROBE_COM/.depends
1546	-rm NAMES_COM/.depends
1547	-rm PERL2ARB/.depends
1548
1549	comdepends: comtools clrdotdepends
1550	@echo "$(SEP) Partially build com interface"
1551	$(MAKE) PROBE_COM/PROBE_COM.depends NAMES_COM/NAMES_COM.depends
1552	$(MAKE) PROBE_COM/server.depends NAMES_COM/server.depends
1553
1554	depends: genheaders comdepends
1555	@echo "$(SEP) Updating other dependencies"
1556	$(MAKE) $(subst NAMES_COM/server.depends,,$(subst PROBE_COM/server.depends,,$(ARCHS:.a=.depends))) \
1557	HELP_SOURCE/HELP_SOURCE.depends \
1558	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.depends \
1559
1560	$(MAKE) libdepends
1561
1562	depend: depends
1563
1564	# ------------------------------------------------------------
1565	# dependency generation tests for AISC code
1566	#(all should work w/o creating wrong dependencies;
1567	# neither in XXX_COM/Makefile nor in code using AISC interface)
1568	dependstest1: silent_clean
1569	$(MAKE) depends
1570	dependstest2: silent_clean
1571	$(MAKE) com
1572	dependstest3: silent_clean
1573	$(MAKE) aw
1574	dependstest4: silent_clean
1575	$(MAKE) pt
1576	dependstest5: silent_clean
1577	$(MAKE) na
1578	dependstest6: silent_clean
1579	$(MAKE) nt
1580	dependstest7: silent_clean
1581	$(MAKE) all
1582	# ------------------------------------------------------------
1583
1584	AISC_MKPTPS/AISC_MKPTPS.dummy: links
1585
1586	proto_tools: AISC_MKPTPS/AISC_MKPTPS.dummy
1587
1588	proto: proto_tools
1589	@echo $(SEP) Updating prototypes
1590	$(MAKE) \
1591	ARBDB/ARBDB.proto \
1592	AISC_COM/AISC_COM.proto \
1593	ARB_GDE/ARB_GDE.proto \
1594	CORE/CORE.proto \
1595	CONVERTALN/CONVERTALN.proto \
1596	NTREE/NTREE.proto \
1597	MERGE/MERGE.proto \
1598	$(ARCHS_PT_SERVER:.a=.proto) \
1599	SERVERCNTRL/SERVERCNTRL.proto \
1600	SL/SL.proto \
1601
1602	#********************************************************************************
1603
1604	valgrind_update: links
1605	@echo $(SEP) Updating for valgrind
1606	$(MAKE) -C SOURCE_TOOLS valgrind_update
1607
1608	#********************************************************************************
1609
1610	TAGFILE=TAGS
1611	TAGFILE_TMP=TAGS.tmp
1612
1613	TAG_SOURCE_HEADERS=TAGS.headers
1614	TAG_SOURCE_CODE=TAGS.codefiles
1615	TAG_SOURCE_LISTS=$(TAG_SOURCE_HEADERS) $(TAG_SOURCE_CODE)
1616
1617	ETAGS=ctags -e -f $(TAGFILE_TMP) --sort=no --if0=no --extra=q
1618	ETAGS_TYPES=--C-kinds=cgnsut --C++-kinds=cgnsut
1619	ETAGS_FUN =--C-kinds=fm --C++-kinds=fm
1620	ETAGS_REST =--C-kinds=dev --C++-kinds=dev
1621
1622	FILTER_TAGS_SOURCES= \
1623	$(SED) -e 's/^.\///g' \| \
1624	grep -P -v -i '^HEADERLIBS\|^GDE/\|/GEN[CH]/'
1625
1626	$(TAG_SOURCE_HEADERS): links
1627	find . \( -name '.hxx' -o -name ".h" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1628
1629	$(TAG_SOURCE_CODE): links
1630	find . \( -name '.cxx' -o -name ".c" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1631
1632	tags: $(TAG_SOURCE_LISTS)
1633	$(ETAGS) $(ETAGS_TYPES) -L $(TAG_SOURCE_HEADERS)
1634	$(ETAGS) -a $(ETAGS_FUN) -L $(TAG_SOURCE_HEADERS)
1635	$(ETAGS) -a $(ETAGS_REST) -L $(TAG_SOURCE_HEADERS)
1636	$(ETAGS) -a $(ETAGS_TYPES) -L $(TAG_SOURCE_CODE)
1637	$(ETAGS) -a $(ETAGS_FUN) -L $(TAG_SOURCE_CODE)
1638	$(ETAGS) -a $(ETAGS_REST) -L $(TAG_SOURCE_CODE)
1639	mv_if_diff $(TAGFILE_TMP) $(TAGFILE)
1640	rm $(TAG_SOURCE_LISTS)
1641
1642	#********************************************************************************
1643
1644	LINKSTAMP=SOURCE_TOOLS/stamp.generate_all_links
1645
1646	links: checks $(LINKSTAMP) arbmainwrapper
1647	links_no_checks: $(LINKSTAMP) arbmainwrapper
1648
1649	forcelinks:
1650	-rm $(LINKSTAMP)
1651	$(MAKE) links
1652
1653	$(LINKSTAMP): SOURCE_TOOLS/generate_all_links.sh
1654	+SOURCE_TOOLS/generate_all_links.sh
1655	touch $(LINKSTAMP)
1656
1657	clean_links:
1658	# avoid to delete linked pts, nas or arb_tcp.dat:
1659	find . -path './lib' -prune -o -type l -exec rm {} \;
1660	# removed obsolete file - refuses to disappear due to 'prune' above
1661	@rm -f lib/help/GDEHELP
1662	@rm -f $(LINKSTAMP) lib/inputMasks/format.readme
1663
1664	redo_links: clean_links
1665	$(MAKE) links_no_checks
1666
1667	#********************************************************************************
1668
1669	header_libs:
1670	$(MAKE) -C HEADERLIBS all
1671
1672	#********************************************************************************
1673
1674	gde: GDE/GDE.dummy
1675	GDE: gde
1676	agde: ARB_GDE/ARB_GDE.dummy
1677
1678	tools: TOOLS/TOOLS.dummy
1679
1680	convert: $(CONVERT_ALN)
1681	readseq: READSEQ/READSEQ.dummy
1682
1683	#***************************************************************************************
1684	# Some user commands
1685	#***************************************************************************************
1686
1687	menus: binlink links
1688	@(( \
1689	echo "$(SEP) Make GDEHELP"; \
1690	$(MAKE) -C GDEHELP -r all && \
1691	echo "$(SEP) Make GDEHELP [done]"; \
1692	) > GDEHELP.log 2>&1 && (cat GDEHELP.log;rm GDEHELP.log)) \|\| (cat GDEHELP.log;rm GDEHELP.log;false)
1693
1694	ifeq ($(DEBUG),1)
1695	BIN_TARGET=develall
1696	else
1697	BIN_TARGET=all
1698	endif
1699
1700
1701	binlink:
1702	$(MAKE) -C bin $(BIN_TARGET)
1703
1704	preplib:
1705	(cd lib;$(MAKE) all)
1706
1707	# --------------------------------------------------------------------------------
1708	# This section is quite tricky:
1709	#
1710	# make 'perl' is a BIG target, so when it has to be made, it has to be started
1711	# as early as possible to reduce overall compile time. Since 'make' does not
1712	# provide any priotities, i force it to build all 'perl'-prerequisites early, by
1713	# adding artificial dependencies to these prerequisites
1714	#
1715	# That behavior is likely to be system-dependent.
1716	# My goal was only to make it work on my current development system,
1717	# where this saves about 20% of overall build time.
1718
1719	ifeq ($(WITHPERL),1)
1720	links_non_perl: PERLTOOLS/PERLTOOLS.dummy
1721	perltools: links_non_perl
1722	perl: realperl
1723	else
1724	links_non_perl: links
1725	perl:
1726	$(MAKE) "WITHPERL=1" perl
1727	endif
1728
1729	# ---------------------------------------- perl
1730
1731	ifeq ($(ARB_64),$(BUILDHOST_64))
1732	TEST_PERL_SCRIPTS=$(MAKE) -C PERL_SCRIPTS/test test
1733	else
1734	TEST_PERL_SCRIPTS=echo "skipping perl script compilation (when cross-compiling)"
1735	endif
1736
1737	realperl: perltools
1738	(( \
1739	echo "$(SEP) Make PERL2ARB" ; \
1740	$(TIME) $(MAKE) -C PERL2ARB -r -f Makefile.main \
1741	"AUTODEPENDS=1" \
1742	"dflags=$(dflags)" \
1743	"cross_cflags=$(cross_cflags) $(cxxflags) $(dflags)" \
1744	"cross_lflags=$(cross_lflags)" \
1745	"COMPILER_VERSION=$(COMPILER_VERSION)" \
1746	all && \
1747	$(TEST_PERL_SCRIPTS) && \
1748	echo "$(SEP) Make PERL2ARB [done]" ; \
1749	) > PERL2ARB.log 2>&1 && (cat PERL2ARB.log;rm PERL2ARB.log)) \|\| (cat PERL2ARB.log;rm PERL2ARB.log;false)
1750
1751	perl_clean:
1752	@$(MAKE) -C PERL2ARB -r -f Makefile.main \
1753	"AUTODEPENDS=0" \
1754	clean
1755
1756	PERL2ARB/PERL2ARB.clean:
1757	$(MAKE) perl_clean
1758	$(MAKE) -C PERL_SCRIPTS/test clean
1759
1760	# ---------------------------------------- bindings to script languages
1761
1762	bindings: lib/libCORE.so lib/libARBDB.so
1763	$(MAKE) -C BINDINGS all ARBDEPENDS="$(^:%=../%)" DFLAGS="$(dflags)"
1764
1765	bindings_clean:
1766	$(MAKE) -C BINDINGS clean
1767
1768	# ----------------------------------------
1769
1770	CLOC=cloc-1.08.pl
1771	CLOCFLAGS=--no3 --quiet --progress-rate=0
1772	CLOCARB=--exclude-dir=GDE .
1773	CLOCEXT=GDE
1774	CLOCCODE=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.code.def
1775	CLOCREST=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.rest.def
1776	CLOCFILT=tail --lines=+4
1777
1778	cloc:
1779	@echo 'Arb code:'
1780	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCARB) \| $(CLOCFILT)
1781	@echo 'Arb rest:'
1782	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCARB) \| $(CLOCFILT)
1783	@echo 'External code:'
1784	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCEXT) \| $(CLOCFILT)
1785	@echo 'External rest:'
1786	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCEXT) \| $(CLOCFILT)
1787
1788	# ---------------------------------------- check ressources
1789
1790	check_res:
1791	$(ARBHOME)/SOURCE_TOOLS/check_ressources.pl
1792
1793	# ---------------------------------------- cleaning
1794
1795	rmbak:
1796	@echo "Cleanup:"
1797	@find . \( -name '*%' \
1798	-o -name '*.bak' \
1799	-o -name '*~' \) \
1800	-o \( -name 'core' -a \! -type d \) \
1801	-exec rm -v {} \;
1802
1803	bin_reinit:
1804	$(MAKE) bin/bin.clean
1805	$(MAKE) -C "bin" all
1806
1807	clean_directories:
1808	-rm -rf \
1809	$(ARBHOME)/PROBE_SET/bin \
1810	$(ARBHOME)/INCLUDE \
1811
1812	libclean:
1813	-find $(ARBHOME) -type f \( -name '*.a' ! -type l \) -exec rm -f {} \;
1814
1815	objclean:
1816	-find $(ARBHOME) -type f \( -name '*.o' ! -type l \) -exec rm -f {} \;
1817
1818	# bin.clean and HELP_SOURCE.clean interfere
1819	clean3:
1820	$(MAKE) bin/bin.clean
1821	$(MAKE) HELP_SOURCE/HELP_SOURCE.clean
1822
1823	clean2: $(ARCHS:.a=.clean) \
1824	clean3 \
1825	rmbak \
1826	libclean \
1827	objclean \
1828	lib/lib.clean \
1829	GDEHELP/GDEHELP.clean \
1830	HEADERLIBS/HEADERLIBS.clean \
1831	SOURCE_TOOLS/SOURCE_TOOLS.clean \
1832	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.clean \
1833	UNIT_TESTER/UNIT_TESTER.clean \
1834	TEMPLATES/TEMPLATES.clean \
1835	perl_clean \
1836	clean_directories \
1837
1838	rm -f .last_gcc .last_compiler config.makefile.bak
1839
1840	# links are needed for cleanup
1841	clean: redo_links motif_xpm_hack_clean
1842	$(MAKE) clean2
1843	$(MAKE) clean_cov_all clean_links
1844
1845	silent_clean:
1846	$(MAKE) clean >/dev/null
1847
1848	# 'relocated' is about 50% faster than 'rebuild'
1849	reloc_clean: links
1850	@echo "---------------------------------------- Relocation cleanup"
1851	$(MAKE) \
1852	perl_clean \
1853	GDEHELP/GDEHELP.clean \
1854	HELP_SOURCE/genhelp/genhelp.clean \
1855	bin/bin.clean \
1856	libclean \
1857	objclean
1858
1859	relocated: links
1860	$(MAKE) reloc_clean
1861	@echo "---------------------------------------- and remake"
1862	$(MAKE) build
1863
1864	# -----------------------------------
1865	# some stress tests:
1866
1867	rebuild4ever: rebuild
1868	$(MAKE) rebuild4ever
1869
1870	build4ever: build
1871	$(MAKE) build4ever
1872
1873	clean4ever: clean
1874	$(MAKE) clean4ever
1875
1876	test4ever: ut
1877	$(MAKE) test4ever
1878
1879	perl4ever: clean
1880	$(MAKE) links
1881	$(MAKE) perl
1882	$(MAKE) perl4ever
1883
1884
1885	# -----------------------------------
1886
1887	rebuild: clean
1888	$(MAKE) all
1889
1890	relink: bin/bin.clean libclean
1891	$(MAKE) build
1892
1893	tarfile: rebuild
1894	$(MAKE) prepare_libdir
1895	util/arb_compress
1896
1897	tarfile_quick: build
1898	$(MAKE) prepare_libdir
1899	util/arb_compress
1900
1901	save: sourcetarfile
1902
1903	patch:
1904	SOURCE_TOOLS/arb_create_patch.sh arbPatch
1905
1906	# test early whether save will work
1907	savetest:
1908	@util/arb_srclst.pl >/dev/null
1909
1910	testsave: savetest
1911
1912	sourcetarfile: rmbak
1913	util/arb_save
1914
1915	save2: rmbak
1916	util/arb_save ignore
1917
1918	save_test: rmbak
1919	@echo "Testing source list.."
1920	@util/arb_srclst.pl > /dev/null
1921
1922	save_test_no_error:
1923	@-$(MAKE) save_test
1924
1925	inc_candi:
1926	touch SOURCE_TOOLS/inc_candi.stamp
1927	$(MAKE) do_version_update
1928
1929	inc_patch:
1930	touch SOURCE_TOOLS/inc_patch.stamp
1931	$(MAKE) do_version_update
1932
1933	inc_minor:
1934	touch SOURCE_TOOLS/inc_minor.stamp
1935	$(MAKE) do_version_update
1936
1937	inc_major:
1938	touch SOURCE_TOOLS/inc_major.stamp
1939	$(MAKE) do_version_update
1940
1941	do_version_update:
1942	@echo Incrementing version information
1943	$(MAKE) testsave
1944	$(MAKE) genheaders # auto upgrades version early
1945
1946	show_version:
1947	$(MAKE) genheaders # updates version info
1948	@echo "$(SEP) ARB version info"
1949	@grep ARB_VERSION TEMPLATES/arb_build.h
1950	@echo "$(SEP)"
1951
1952	release_quick:
1953	-rm arb.tgz arbsrc.tgz
1954	$(MAKE) tarfile_quick
1955	$(MAKE) sourcetarfile
1956
1957	# --------------------------------------------------------------------------------
1958
1959	MAKE_IF_COMMITTED=$(MAKE) -C SOURCE_TOOLS -f Makefile.commitbuild
1960
1961	build_CTARGET:
1962	+$(MAKE_IF_COMMITTED) "CTARGET=$(CTARGET)" build_CTARGET
1963
1964	reset_committed_build:
1965	+$(MAKE_IF_COMMITTED) reset
1966
1967	# --------------------------------------------------------------------------------
1968
1969	arbapplications: nt pa e4 wetc pt na nal di ph ds wetc cma
1970
1971	arb_external: convert tools gde readseq tg pst xmlin
1972
1973	arb_no_perl: arbapplications help arb_external
1974
1975	arb: motif_xpm_hack
1976	$(MAKE) "WITHPERL=1" perl arb_no_perl
1977
1978	motif_xpm_hack:
1979	$(MAKE) -r -C "lib/motifHack" all
1980
1981	motif_xpm_hack_clean:
1982	$(MAKE) -r -C "lib/motifHack" clean
1983
1984	# --------------------------------------------------------------------------------
1985	# special targets for SOURCE_TOOLS/remake_after_change.pl
1986
1987	rac_arb_dist: di
1988	rac_arb_edit4: e4
1989	rac_arb_ntree: nt
1990	rac_arb_pars: pa
1991	rac_arb_phylo: ph
1992	rac_arb_wetc: wetc
1993	rac_arb_naligner: nal
1994	rac_arb_pt_server: pt
1995	rac_arb_db_server: ds
1996	rac_arb_name_server: na
1997	rac_arb_convert_aln: convert
1998	rac_arb_treegen: tg
1999	rac_arb_rnacma: cma
2000	rac_arb_help2xml: help
2001
2002	rac_arb_a2ps: tools
2003	rac_arb_consensus_tree: tools
2004	rac_arb_dnarates: tools
2005	rac_arb_export_rates: tools
2006	rac_arb_export_tree: tools
2007	rac_arb_gene_probe: tools
2008	rac_arb_message: tools
2009	rac_arb_notify: tools
2010	rac_arb_primer: tools
2011	rac_arb_probe: tools
2012	rac_arb_read_tree: tools
2013
2014	# --------------------------------------------------------------------------------
2015	# unit testing
2016	# @@@ work in progress
2017	#
2018	# goal is to automatically test all libraries/executables using TESTED_UNITS_AUTO
2019	#
2020	# currently not all test executables link w/o error
2021	# (see UNITS_WORKING, UNITS_UNTESTABLE_ATM and UNITS_NEED_FIX)
2022
2023	# define RNA3D/RNA3D.test
2024	RNA3D_TEST := $(subst .a,.test,$(RNA3D_LIB))
2025
2026	TESTED_UNITS_AUTO = $(ARCHS:.a=.test)
2027
2028	UNITS_WORKING = \
2029	$(RNA3D_TEST) \
2030	AWTI/AWTI.test \
2031	DIST/DIST.test \
2032	EISPACK/EISPACK.test \
2033	GENOM/GENOM.test \
2034	GL/glAW/libglAW.test \
2035	GL/glpng/libglpng_arb.test \
2036	ISLAND_HOPPING/ISLAND_HOPPING.test \
2037	NALIGNER/NALIGNER.test \
2038	NAMES/NAMES.test \
2039	PHYLO/PHYLO.test \
2040	PRIMER_DESIGN/PRIMER_DESIGN.test \
2041	PROBE_DESIGN/PROBE_DESIGN.test \
2042	SECEDIT/SECEDIT.test \
2043	SEQ_QUALITY/SEQ_QUALITY.test \
2044	SERVERCNTRL/SERVERCNTRL.test \
2045	SL/ALIVIEW/ALIVIEW.test \
2046	SL/AP_TREE/AP_TREE.test \
2047	SL/ARB_TREE/ARB_TREE.test \
2048	SL/AW_HELIX/AW_HELIX.test \
2049	SL/AW_NAME/AW_NAME.test \
2050	SL/DB_SCANNER/DB_SCANNER.test \
2051	SL/GUI_ALIVIEW/GUI_ALIVIEW.test \
2052	SL/HELIX/HELIX.test \
2053	SL/ITEMS/ITEMS.test \
2054	SL/LOCATION/LOCATION.test \
2055	SL/MATRIX/MATRIX.test \
2056	SL/REFENTRIES/REFENTRIES.test \
2057	SL/SEQUENCE/SEQUENCE.test \
2058	SL/TRANSLATE/TRANSLATE.test \
2059	SL/TREE_ADMIN/TREE_ADMIN.test \
2060	SL/TREE_WRITE/TREE_WRITE.test \
2061	STAT/STAT.test \
2062	TREEGEN/TREEGEN.test \
2063	WETC/WETC.test \
2064	XML/XML.test \
2065	SL/ROOTED_TREE/ROOTED_TREE.test \
2066
2067	# untestable units
2068
2069	UNITS_NEED_FIX = \
2070	ptpan/PROBE.test \
2071
2072	UNITS_UNTESTABLE_ATM = \
2073	PROBE_SET/PROBE_SET.test \
2074	XML_IMPORT/XML_IMPORT.test \
2075
2076	# for the moment, put all units containing tests into UNITS_TESTED or UNITS_TESTED_FIRST
2077
2078	UNITS_TESTED_FIRST = \
2079	PARSIMONY/PARSIMONY.test \
2080	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.test \
2081	SL/NDS/NDS.test \
2082	ARB_GDE/ARB_GDE.test \
2083	GENOM_IMPORT/GENOM_IMPORT.test \
2084	SL/MACROS/MACROS.test \
2085	SL/REGEXPR/REGEXPR.test \
2086	SL/FILTER/FILTER.test \
2087	ARBDB/libARBDB.test \
2088	CONSENSUS_TREE/CONSENSUS_TREE.test \
2089	TOOLS/arb_consensus_tree.test \
2090	TOOLS/arb_test.test \
2091	TOOLS/arb_probe.test \
2092	PERLTOOLS/arb_proto_2_xsub.test \
2093	AWTC/AWTC.test \
2094
2095	# plain test-libaries not linked anywhere
2096	TEST_SANDBOXES = \
2097	SL/CB/CB.test \
2098
2099	UNITS_TESTED = \
2100	SL/TREE_READ/TREE_READ.test \
2101	DBSERVER/DBSERVER.test \
2102	AWT/libAWT.test \
2103	CORE/libCORE.test \
2104	SL/INSDEL/INSDEL.test \
2105	SL/TREEDISP/TREEDISP.test \
2106	NTREE/NTREE.test \
2107	AISC_MKPTPS/mkptypes.test \
2108	EDIT4/EDIT4.test \
2109	MERGE/MERGE.test \
2110	MULTI_PROBE/MULTI_PROBE.test \
2111	SERVERCNTRL/SERVERCNTRL.test \
2112	SL/FAST_ALIGNER/FAST_ALIGNER.test \
2113	SL/PRONUC/PRONUC.test \
2114	WINDOW/libWINDOW.test \
2115	HELP_SOURCE/arb_help2xml.test \
2116	CONVERTALN/CONVERTALN.test \
2117	SL/SEQIO/SEQIO.test \
2118	SL/PTCLEAN/PTCLEAN.test \
2119	PROBE/PROBE.test \
2120	SL/DB_QUERY/DB_QUERY.test \
2121
2122	TESTED_UNITS_MANUAL = \
2123	$(TEST_SANDBOXES) \
2124	$(UNITS_TESTED_FIRST) \
2125	$(UNITS_TESTED) \
2126
2127	# $(UNITS_WORKING)
2128
2129	# see UNIT_TESTER/sym2testcode.pl@disableErrorOnUnitsWithoutTests
2130
2131	#TESTED_UNITS = $(TESTED_UNITS_AUTO)
2132	TESTED_UNITS = $(TESTED_UNITS_MANUAL)
2133
2134	# ----------------------------------------
2135
2136	TEST_LOG_DIR = UNIT_TESTER/logs
2137	TEST_RUN_SUITE=$(MAKE) $(NODIR) -C UNIT_TESTER -f Makefile.suite -r
2138	TEST_MAKE_FLAGS=
2139	TEST_POST_CLEAN=
2140	ifeq ($(COVERAGE),1)
2141	TEST_POST_CLEAN=$(MAKE) clean_cov
2142	TEST_MAKE_FLAGS+=-j1
2143	endif
2144
2145
2146	%.test:
2147	-@( export ID=$$$$; mkdir -p $(TEST_LOG_DIR); \
2148	( \
2149	echo "fake[1]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"; \
2150	$(MAKE) -C UNIT_TESTER -f Makefile.test -r \
2151	"UNITDIR=$(@D)" \
2152	"UNITLIBNAME=$(@F:.test=)" \
2153	"COVERAGE=$(COVERAGE)" \
2154	"ARB_PID=$(ARB_PID)_$(@F)" \
2155	runtest; \
2156	echo "fake[1]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"; \
2157	$(TEST_POST_CLEAN) \
2158	) >$(TEST_LOG_DIR)/$(@F).log 2>&1; \
2159	UNIT_TESTER/log_result.pl $(TEST_LOG_DIR)/$(@F).log )
2160
2161
2162	test_base: $(UNIT_TESTER_LIB:.a=.dummy) $(subst .test,.dummy,$(TEST_SANDBOXES))
2163
2164	clean_cov:
2165	find . \( -name ".gcda" -o -name ".gcov" -o -name "*.cov" \) -exec rm {} \;
2166
2167	clean_cov_all: clean_cov
2168	find . \( -name "*.gcno" \) -exec rm {} \;
2169
2170	run_tests: test_base clean_cov
2171	$(MAKE) "ARB_PID=UT_$$$$" run_tests_faked_arbpid
2172
2173	cleanup_faked_arbpids:
2174	@-rm ~/.arb_tmp/tmp/arb_pids_${USER}_${ARB_PID}_*
2175
2176	cleanup_faked_arbpids_and_fail: cleanup_faked_arbpids
2177	@false
2178
2179	run_tests_faked_arbpid:
2180	+@$(TEST_RUN_SUITE) init
2181	@echo "fake[2]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"
2182	$(MAKE) $(TEST_MAKE_FLAGS) $(NODIR) $(TESTED_UNITS) \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2183	@echo "fake[2]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"
2184	+@$(TEST_RUN_SUITE) cleanup \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2185	@$(MAKE) clean_cov >/dev/null
2186	@$(MAKE) cleanup_faked_arbpids
2187
2188	ut:
2189	ifeq ($(UNIT_TESTS),1)
2190	@echo $(MAKE) run_tests
2191	@$(MAKE) run_tests
2192	else
2193	@echo "Not compiled with unit tests"
2194	endif
2195
2196
2197	aut:
2198	+@$(TEST_RUN_SUITE) unskip
2199	$(MAKE) ut
2200
2201	# --------------------------------------------------------------------------------
2202
2203	TIMELOG=$(ARBHOME)/arb_time.log
2204	TIMEARGS=--append --output=$(TIMELOG) --format=" %E(%S+%U) %P [%C]"
2205	TIMECMD=$(TIME) $(TIMEARGS)
2206
2207	time_one:
2208	ifeq ($(ONE_TIMED_TARGET),)
2209	@echo "Error: You have to pass ONE_TIMED_TARGET to $@"
2210	false
2211	else
2212	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET)"
2213	@$(TIMECMD) $(MAKE) $(ONE_TIMED_TARGET)
2214	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET) [done]"
2215	endif
2216
2217	timed_target:
2218	ifeq ($(TIMED_TARGET),)
2219	@echo "Error: You have to pass TIMED_TARGET to $@"
2220	false
2221	else
2222	@echo "Build time:" > $(TIMELOG)
2223	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2224	@cat $(TIMELOG)
2225	@rm $(TIMELOG)
2226	endif
2227
2228	timed_target_tested:
2229	ifeq ($(TIMED_TARGET),)
2230	@echo "Error: You have to pass TIMED_TARGET to $@"
2231	false
2232	else
2233	@echo "Build time:" > $(TIMELOG)
2234	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2235	$(MAKE) "ONE_TIMED_TARGET=ut" time_one
2236	@cat $(TIMELOG)
2237	@rm $(TIMELOG)
2238	endif
2239
2240	clean_timed_target:
2241	ifeq ($(TIMED_TARGET),)
2242	@echo "Error: You have to pass TIMED_TARGET to $@"
2243	false
2244	else
2245	@echo "Build time:" > $(TIMELOG)
2246	$(MAKE) "ONE_TIMED_TARGET=clean" time_one
2247	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2248	@cat $(TIMELOG)
2249	@rm $(TIMELOG)
2250	endif
2251
2252	# --------------------------------------------------------------------------------
2253
2254	CHECKOUT_MODIFIED=0# set to 1 to temporarily skip test for modifications (do not check in if set to 1)
2255
2256	check_svn_does_not_contain_generated:
2257	ifeq ($(CHECKOUT_MODIFIED),0)
2258	@echo "Testing that build does not modify files in SVN"
2259	@test 0 = `svn status \| wc -l` \|\| ( \
2260	echo "The checkout is not/no longer clean:"; \
2261	svn status; \
2262	echo "- if this fails instantly, your checkout is not clean"; \
2263	echo "- if this fails after other targets, these targets modify checked in data"; \
2264	echo " (a common cause may be that depends are not up to date)"; \
2265	false)
2266	else
2267	grep -Hn 'CHECKOUT_MODIFIED' Makefile
2268	endif
2269
2270	check_svn_ignores_generated:
2271	@test 0 = `svn status \| grep '^\?' \| wc -l` \|\| ( \
2272	echo "There are svn-unignored files:"; \
2273	svn status \| grep '^\?'; \
2274	echo "(all generated files should be svn-ignored)"; \
2275	false)
2276
2277	check_svn_state: check_svn_does_not_contain_generated
2278	$(MAKE) check_svn_ignores_generated
2279	$(MAKE) savetest
2280
2281	things_that_always_should_work: depends proto
2282
2283	post_commit_check:
2284	@echo "---------------------------------------- [Initial]"
2285	$(MAKE) check_svn_state
2286
2287	$(MAKE) clean
2288	@echo "---------------------------------------- [After 'make clean']"
2289	$(MAKE) check_svn_state
2290
2291	$(MAKE) things_that_always_should_work
2292	@echo "---------------------------------------- [After 'make things_that_always_should_work']"
2293	$(MAKE) check_svn_state
2294
2295	$(MAKE) all
2296	@echo "---------------------------------------- [After 'make all']"
2297	$(MAKE) check_svn_state
2298
2299	$(MAKE) things_that_always_should_work
2300	@echo "---------------------------------------- [Final]"
2301	$(MAKE) check_svn_state
2302
2303	# --------------------------------------------------------------------------------
2304
2305	build: arb
2306	$(MAKE) binlink preplib compile_compatibility
2307
2308	all:
2309	@echo "Build time" > $(TIMELOG)
2310	@echo "$(SEP) $(MAKE) build"
2311	@$(TIMECMD) $(MAKE) build
2312	@echo $(SEP)
2313	@echo "made 'all' with success."
2314	@echo "to start arb enter 'arb'"
2315	ifeq ($(UNIT_TESTS),1)
2316	@echo $(MAKE) run_tests
2317	@$(TIMECMD) $(MAKE) run_tests
2318	endif
2319	@echo "$(SEP) $(MAKE) build [done]"
2320	@$(MAKE) save_test_no_error >/dev/null # just show hints
2321	@cat $(TIMELOG)
2322	@rm $(TIMELOG)
2323

Note: See TracBrowser for help on using the repository browser.

Download in other formats: