1 | .SUFFIXES: .o .a .cxx .depend |
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2 | |
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3 | OBJECTS= $(subst .cxx,.o,$(wildcard *.cxx)) |
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4 | |
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5 | $(MAIN): $(OBJECTS) check_error_codes |
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6 | $(LINK_STATIC_LIB) $(MAIN) $(OBJECTS) |
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7 | |
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8 | check_error_codes: |
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9 | @./show_error_list.pl -check |
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10 | |
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11 | .cxx.o: |
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12 | $(A_CXX) $(cflags) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) |
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13 | |
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14 | proto: |
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15 | ../AISC_MKPTPS/aisc_mkpt -P -G -w prototypes.h $(OBJECTS:.o=.cxx) >prototypes.h.tmp |
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16 | ../SOURCE_TOOLS/mv_if_diff prototypes.h.tmp prototypes.h |
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17 | |
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18 | clean: |
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19 | rm -f *.o $(BINARY) |
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20 | |
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21 | DEPENDS = $(OBJECTS:.o=.depend) |
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22 | depends: $(DEPENDS) |
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23 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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24 | @rm $(DEPENDS) |
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25 | $(DEPENDS): depend.init |
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26 | depend.init: |
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27 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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28 | .c.depend: |
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29 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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30 | .cxx.depend: |
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31 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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32 | |
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33 | # DO NOT DELETE THIS LINE -- make depend depends on it. |
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34 | |
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35 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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36 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from main) |
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37 | |
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38 | convert.o: defs.h |
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39 | convert.o: embl.h |
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40 | convert.o: fun.h |
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41 | convert.o: genbank.h |
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42 | convert.o: global.h |
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43 | convert.o: input_format.h |
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44 | convert.o: macke.h |
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45 | convert.o: parser.h |
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46 | convert.o: prototypes.h |
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47 | convert.o: rdp_info.h |
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48 | convert.o: reader.h |
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49 | convert.o: refs.h |
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50 | convert.o: seq.h |
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51 | convert.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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52 | convert.o: $(ARBHOME)/INCLUDE/arb_core.h |
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53 | convert.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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54 | convert.o: $(ARBHOME)/INCLUDE/arbtools.h |
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55 | convert.o: $(ARBHOME)/INCLUDE/attributes.h |
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56 | convert.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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57 | convert.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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58 | convert.o: $(ARBHOME)/INCLUDE/dupstr.h |
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59 | convert.o: $(ARBHOME)/INCLUDE/gccver.h |
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60 | convert.o: $(ARBHOME)/INCLUDE/smartptr.h |
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61 | convert.o: $(ARBHOME)/INCLUDE/test_global.h |
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62 | |
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63 | date.o: fun.h |
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64 | date.o: global.h |
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65 | date.o: prototypes.h |
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66 | date.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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67 | date.o: $(ARBHOME)/INCLUDE/arb_core.h |
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68 | date.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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69 | date.o: $(ARBHOME)/INCLUDE/arbtools.h |
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70 | date.o: $(ARBHOME)/INCLUDE/attributes.h |
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71 | date.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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72 | date.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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73 | date.o: $(ARBHOME)/INCLUDE/dupstr.h |
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74 | date.o: $(ARBHOME)/INCLUDE/gccver.h |
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75 | date.o: $(ARBHOME)/INCLUDE/smartptr.h |
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76 | date.o: $(ARBHOME)/INCLUDE/test_global.h |
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77 | date.o: $(ARBHOME)/INCLUDE/test_unit.h |
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78 | |
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79 | embl.o: defs.h |
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80 | embl.o: embl.h |
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81 | embl.o: fun.h |
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82 | embl.o: genbank.h |
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83 | embl.o: global.h |
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84 | embl.o: input_format.h |
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85 | embl.o: macke.h |
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86 | embl.o: parser.h |
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87 | embl.o: prototypes.h |
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88 | embl.o: rdp_info.h |
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89 | embl.o: reader.h |
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90 | embl.o: refs.h |
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91 | embl.o: seq.h |
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92 | embl.o: wrap.h |
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93 | embl.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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94 | embl.o: $(ARBHOME)/INCLUDE/arb_core.h |
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95 | embl.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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96 | embl.o: $(ARBHOME)/INCLUDE/arbtools.h |
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97 | embl.o: $(ARBHOME)/INCLUDE/attributes.h |
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98 | embl.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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99 | embl.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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100 | embl.o: $(ARBHOME)/INCLUDE/dupstr.h |
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101 | embl.o: $(ARBHOME)/INCLUDE/gccver.h |
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102 | embl.o: $(ARBHOME)/INCLUDE/smartptr.h |
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103 | embl.o: $(ARBHOME)/INCLUDE/test_global.h |
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104 | embl.o: $(ARBHOME)/INCLUDE/test_unit.h |
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105 | |
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106 | fconv.o: defs.h |
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107 | fconv.o: fun.h |
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108 | fconv.o: global.h |
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109 | fconv.o: prototypes.h |
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110 | fconv.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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111 | fconv.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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112 | fconv.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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113 | fconv.o: $(ARBHOME)/INCLUDE/arb_core.h |
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114 | fconv.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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115 | fconv.o: $(ARBHOME)/INCLUDE/arb_diff.h |
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116 | fconv.o: $(ARBHOME)/INCLUDE/arb_error.h |
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117 | fconv.o: $(ARBHOME)/INCLUDE/arb_file.h |
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118 | fconv.o: $(ARBHOME)/INCLUDE/arb_msg.h |
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119 | fconv.o: $(ARBHOME)/INCLUDE/arb_string.h |
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120 | fconv.o: $(ARBHOME)/INCLUDE/arbdb.h |
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121 | fconv.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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122 | fconv.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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123 | fconv.o: $(ARBHOME)/INCLUDE/arbtools.h |
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124 | fconv.o: $(ARBHOME)/INCLUDE/attributes.h |
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125 | fconv.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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126 | fconv.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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127 | fconv.o: $(ARBHOME)/INCLUDE/downcast.h |
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128 | fconv.o: $(ARBHOME)/INCLUDE/dupstr.h |
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129 | fconv.o: $(ARBHOME)/INCLUDE/gccver.h |
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130 | fconv.o: $(ARBHOME)/INCLUDE/smartptr.h |
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131 | fconv.o: $(ARBHOME)/INCLUDE/static_assert.h |
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132 | fconv.o: $(ARBHOME)/INCLUDE/test_global.h |
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133 | fconv.o: $(ARBHOME)/INCLUDE/test_unit.h |
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134 | |
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135 | gcg.o: defs.h |
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136 | gcg.o: embl.h |
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137 | gcg.o: fun.h |
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138 | gcg.o: genbank.h |
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139 | gcg.o: global.h |
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140 | gcg.o: input_format.h |
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141 | gcg.o: macke.h |
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142 | gcg.o: parser.h |
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143 | gcg.o: prototypes.h |
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144 | gcg.o: rdp_info.h |
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145 | gcg.o: reader.h |
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146 | gcg.o: refs.h |
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147 | gcg.o: seq.h |
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148 | gcg.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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149 | gcg.o: $(ARBHOME)/INCLUDE/arb_core.h |
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150 | gcg.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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151 | gcg.o: $(ARBHOME)/INCLUDE/arbtools.h |
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152 | gcg.o: $(ARBHOME)/INCLUDE/attributes.h |
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153 | gcg.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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154 | gcg.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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155 | gcg.o: $(ARBHOME)/INCLUDE/dupstr.h |
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156 | gcg.o: $(ARBHOME)/INCLUDE/gccver.h |
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157 | gcg.o: $(ARBHOME)/INCLUDE/smartptr.h |
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158 | gcg.o: $(ARBHOME)/INCLUDE/test_global.h |
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159 | |
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160 | genbank.o: defs.h |
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161 | genbank.o: fun.h |
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162 | genbank.o: genbank.h |
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163 | genbank.o: global.h |
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164 | genbank.o: input_format.h |
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165 | genbank.o: parser.h |
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166 | genbank.o: prototypes.h |
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167 | genbank.o: rdp_info.h |
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168 | genbank.o: reader.h |
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169 | genbank.o: refs.h |
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170 | genbank.o: seq.h |
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171 | genbank.o: wrap.h |
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172 | genbank.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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173 | genbank.o: $(ARBHOME)/INCLUDE/arb_core.h |
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174 | genbank.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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175 | genbank.o: $(ARBHOME)/INCLUDE/arbtools.h |
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176 | genbank.o: $(ARBHOME)/INCLUDE/attributes.h |
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177 | genbank.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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178 | genbank.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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179 | genbank.o: $(ARBHOME)/INCLUDE/dupstr.h |
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180 | genbank.o: $(ARBHOME)/INCLUDE/gccver.h |
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181 | genbank.o: $(ARBHOME)/INCLUDE/smartptr.h |
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182 | genbank.o: $(ARBHOME)/INCLUDE/test_global.h |
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183 | |
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184 | macke.o: defs.h |
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185 | macke.o: fun.h |
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186 | macke.o: global.h |
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187 | macke.o: input_format.h |
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188 | macke.o: macke.h |
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189 | macke.o: parser.h |
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190 | macke.o: prototypes.h |
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191 | macke.o: rdp_info.h |
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192 | macke.o: reader.h |
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193 | macke.o: seq.h |
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194 | macke.o: wrap.h |
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195 | macke.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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196 | macke.o: $(ARBHOME)/INCLUDE/arb_core.h |
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197 | macke.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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198 | macke.o: $(ARBHOME)/INCLUDE/arbtools.h |
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199 | macke.o: $(ARBHOME)/INCLUDE/attributes.h |
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200 | macke.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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201 | macke.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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202 | macke.o: $(ARBHOME)/INCLUDE/dupstr.h |
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203 | macke.o: $(ARBHOME)/INCLUDE/gccver.h |
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204 | macke.o: $(ARBHOME)/INCLUDE/smartptr.h |
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205 | macke.o: $(ARBHOME)/INCLUDE/test_global.h |
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206 | |
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207 | main.o: defs.h |
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208 | main.o: fun.h |
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209 | main.o: global.h |
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210 | main.o: prototypes.h |
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211 | main.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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212 | main.o: $(ARBHOME)/INCLUDE/arb_core.h |
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213 | main.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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214 | main.o: $(ARBHOME)/INCLUDE/arbtools.h |
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215 | main.o: $(ARBHOME)/INCLUDE/attributes.h |
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216 | main.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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217 | main.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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218 | main.o: $(ARBHOME)/INCLUDE/dupstr.h |
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219 | main.o: $(ARBHOME)/INCLUDE/gccver.h |
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220 | main.o: $(ARBHOME)/INCLUDE/smartptr.h |
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221 | main.o: $(ARBHOME)/INCLUDE/test_global.h |
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222 | main.o: $(ARBHOME)/INCLUDE/test_unit.h |
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223 | |
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224 | mg.o: defs.h |
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225 | mg.o: fun.h |
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226 | mg.o: genbank.h |
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227 | mg.o: global.h |
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228 | mg.o: input_format.h |
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229 | mg.o: macke.h |
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230 | mg.o: parser.h |
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231 | mg.o: prototypes.h |
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232 | mg.o: rdp_info.h |
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233 | mg.o: reader.h |
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234 | mg.o: refs.h |
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235 | mg.o: seq.h |
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236 | mg.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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237 | mg.o: $(ARBHOME)/INCLUDE/arb_core.h |
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238 | mg.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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239 | mg.o: $(ARBHOME)/INCLUDE/arbtools.h |
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240 | mg.o: $(ARBHOME)/INCLUDE/attributes.h |
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241 | mg.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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242 | mg.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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243 | mg.o: $(ARBHOME)/INCLUDE/dupstr.h |
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244 | mg.o: $(ARBHOME)/INCLUDE/gccver.h |
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245 | mg.o: $(ARBHOME)/INCLUDE/smartptr.h |
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246 | mg.o: $(ARBHOME)/INCLUDE/test_global.h |
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247 | |
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248 | paup.o: ali.h |
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249 | paup.o: defs.h |
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250 | paup.o: fun.h |
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251 | paup.o: global.h |
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252 | paup.o: input_format.h |
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253 | paup.o: paup.h |
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254 | paup.o: prototypes.h |
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255 | paup.o: reader.h |
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256 | paup.o: seq.h |
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257 | paup.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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258 | paup.o: $(ARBHOME)/INCLUDE/arb_core.h |
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259 | paup.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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260 | paup.o: $(ARBHOME)/INCLUDE/arbtools.h |
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261 | paup.o: $(ARBHOME)/INCLUDE/attributes.h |
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262 | paup.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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263 | paup.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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264 | paup.o: $(ARBHOME)/INCLUDE/dupstr.h |
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265 | paup.o: $(ARBHOME)/INCLUDE/gccver.h |
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266 | paup.o: $(ARBHOME)/INCLUDE/smartptr.h |
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267 | paup.o: $(ARBHOME)/INCLUDE/test_global.h |
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268 | |
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269 | phylip.o: ali.h |
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270 | phylip.o: defs.h |
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271 | phylip.o: fun.h |
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272 | phylip.o: global.h |
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273 | phylip.o: input_format.h |
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274 | phylip.o: prototypes.h |
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275 | phylip.o: reader.h |
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276 | phylip.o: seq.h |
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277 | phylip.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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278 | phylip.o: $(ARBHOME)/INCLUDE/arb_core.h |
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279 | phylip.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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280 | phylip.o: $(ARBHOME)/INCLUDE/arbtools.h |
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281 | phylip.o: $(ARBHOME)/INCLUDE/attributes.h |
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282 | phylip.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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283 | phylip.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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284 | phylip.o: $(ARBHOME)/INCLUDE/dupstr.h |
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285 | phylip.o: $(ARBHOME)/INCLUDE/gccver.h |
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286 | phylip.o: $(ARBHOME)/INCLUDE/smartptr.h |
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287 | phylip.o: $(ARBHOME)/INCLUDE/test_global.h |
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288 | |
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289 | printable.o: ali.h |
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290 | printable.o: defs.h |
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291 | printable.o: fun.h |
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292 | printable.o: global.h |
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293 | printable.o: input_format.h |
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294 | printable.o: prototypes.h |
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295 | printable.o: reader.h |
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296 | printable.o: seq.h |
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297 | printable.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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298 | printable.o: $(ARBHOME)/INCLUDE/arb_core.h |
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299 | printable.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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300 | printable.o: $(ARBHOME)/INCLUDE/arbtools.h |
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301 | printable.o: $(ARBHOME)/INCLUDE/attributes.h |
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302 | printable.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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303 | printable.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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304 | printable.o: $(ARBHOME)/INCLUDE/dupstr.h |
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305 | printable.o: $(ARBHOME)/INCLUDE/gccver.h |
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306 | printable.o: $(ARBHOME)/INCLUDE/smartptr.h |
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307 | printable.o: $(ARBHOME)/INCLUDE/test_global.h |
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308 | |
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309 | rdp_info.o: defs.h |
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310 | rdp_info.o: fun.h |
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311 | rdp_info.o: global.h |
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312 | rdp_info.o: input_format.h |
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313 | rdp_info.o: prototypes.h |
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314 | rdp_info.o: rdp_info.h |
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315 | rdp_info.o: reader.h |
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316 | rdp_info.o: seq.h |
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317 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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318 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_core.h |
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319 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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320 | rdp_info.o: $(ARBHOME)/INCLUDE/arbtools.h |
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321 | rdp_info.o: $(ARBHOME)/INCLUDE/attributes.h |
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322 | rdp_info.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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323 | rdp_info.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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324 | rdp_info.o: $(ARBHOME)/INCLUDE/dupstr.h |
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325 | rdp_info.o: $(ARBHOME)/INCLUDE/gccver.h |
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326 | rdp_info.o: $(ARBHOME)/INCLUDE/smartptr.h |
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327 | rdp_info.o: $(ARBHOME)/INCLUDE/test_global.h |
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328 | |
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329 | reader.o: defs.h |
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330 | reader.o: fun.h |
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331 | reader.o: global.h |
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332 | reader.o: input_format.h |
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333 | reader.o: prototypes.h |
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334 | reader.o: reader.h |
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335 | reader.o: seq.h |
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336 | reader.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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337 | reader.o: $(ARBHOME)/INCLUDE/arb_core.h |
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338 | reader.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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339 | reader.o: $(ARBHOME)/INCLUDE/arbtools.h |
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340 | reader.o: $(ARBHOME)/INCLUDE/attributes.h |
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341 | reader.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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342 | reader.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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343 | reader.o: $(ARBHOME)/INCLUDE/dupstr.h |
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344 | reader.o: $(ARBHOME)/INCLUDE/gccver.h |
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345 | reader.o: $(ARBHOME)/INCLUDE/smartptr.h |
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346 | reader.o: $(ARBHOME)/INCLUDE/test_global.h |
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347 | |
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348 | seq.o: ali.h |
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349 | seq.o: defs.h |
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350 | seq.o: fun.h |
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351 | seq.o: global.h |
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352 | seq.o: input_format.h |
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353 | seq.o: prototypes.h |
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354 | seq.o: reader.h |
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355 | seq.o: seq.h |
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356 | seq.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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357 | seq.o: $(ARBHOME)/INCLUDE/arb_core.h |
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358 | seq.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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359 | seq.o: $(ARBHOME)/INCLUDE/arbtools.h |
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360 | seq.o: $(ARBHOME)/INCLUDE/attributes.h |
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361 | seq.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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362 | seq.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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363 | seq.o: $(ARBHOME)/INCLUDE/dupstr.h |
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364 | seq.o: $(ARBHOME)/INCLUDE/gccver.h |
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365 | seq.o: $(ARBHOME)/INCLUDE/smartptr.h |
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366 | seq.o: $(ARBHOME)/INCLUDE/test_global.h |
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367 | |
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368 | util.o: defs.h |
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369 | util.o: fun.h |
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370 | util.o: global.h |
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371 | util.o: input_format.h |
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372 | util.o: prototypes.h |
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373 | util.o: reader.h |
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374 | util.o: seq.h |
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375 | util.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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376 | util.o: $(ARBHOME)/INCLUDE/arb_core.h |
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377 | util.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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378 | util.o: $(ARBHOME)/INCLUDE/arbtools.h |
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379 | util.o: $(ARBHOME)/INCLUDE/attributes.h |
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380 | util.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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381 | util.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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382 | util.o: $(ARBHOME)/INCLUDE/dupstr.h |
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383 | util.o: $(ARBHOME)/INCLUDE/gccver.h |
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384 | util.o: $(ARBHOME)/INCLUDE/smartptr.h |
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385 | util.o: $(ARBHOME)/INCLUDE/test_global.h |
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386 | |
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387 | wrap.o: defs.h |
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388 | wrap.o: fun.h |
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389 | wrap.o: global.h |
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390 | wrap.o: input_format.h |
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391 | wrap.o: prototypes.h |
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392 | wrap.o: reader.h |
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393 | wrap.o: seq.h |
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394 | wrap.o: wrap.h |
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395 | wrap.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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396 | wrap.o: $(ARBHOME)/INCLUDE/arb_core.h |
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397 | wrap.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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398 | wrap.o: $(ARBHOME)/INCLUDE/arbtools.h |
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399 | wrap.o: $(ARBHOME)/INCLUDE/attributes.h |
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400 | wrap.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h |
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401 | wrap.o: $(ARBHOME)/INCLUDE/cxxforward.h |
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402 | wrap.o: $(ARBHOME)/INCLUDE/dupstr.h |
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403 | wrap.o: $(ARBHOME)/INCLUDE/gccver.h |
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404 | wrap.o: $(ARBHOME)/INCLUDE/smartptr.h |
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405 | wrap.o: $(ARBHOME)/INCLUDE/test_global.h |
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