1 | #ifndef ED4_DEFS_HXX |
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2 | #define ED4_DEFS_HXX |
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3 | |
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4 | #ifndef AW_COLOR_GROUPS_HXX |
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5 | #include <aw_color_groups.hxx> |
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6 | #endif |
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7 | #ifndef AW_WINDOW_HXX |
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8 | #include <aw_window.hxx> |
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9 | #endif |
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10 | #ifndef AW_POSITION_HXX |
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11 | #include <aw_position.hxx> |
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12 | #endif |
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13 | #ifndef ARBDB_BASE_H |
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14 | #include <arbdb_base.h> |
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15 | #endif |
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16 | |
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17 | #if defined(DEBUG) |
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18 | // #define TRACE_REFRESH |
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19 | // #define TRACE_JUMPS |
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20 | #endif |
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21 | |
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22 | |
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23 | class ED4_root; |
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24 | class ED4_database; |
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25 | struct GBS_strstruct; |
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26 | |
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27 | typedef int ED4_COORDINATE; |
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28 | |
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29 | enum ED4_EDITMODI { |
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30 | AD_ALIGN, // add & remove of . possible (default) |
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31 | AD_NOWRITE, // no edits allowed |
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32 | AD_NOWRITE_IF_COMPRESSED, |
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33 | AD_REPLACE, // all edits (overwrite) |
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34 | AD_INSERT // all edits (insert) |
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35 | }; |
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36 | |
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37 | |
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38 | // global variables |
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39 | extern GBDATA *GLOBAL_gb_main; |
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40 | extern ED4_root *ED4_ROOT; |
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41 | |
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42 | extern int TERMINALHEIGHT; // this variable replaces the define |
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43 | extern int INFO_TERM_TEXT_YOFFSET; |
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44 | extern int SEQ_TERM_TEXT_YOFFSET; |
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45 | |
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46 | extern int MAXSEQUENCECHARACTERLENGTH; // greatest # of characters in a sequence string terminal |
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47 | extern int MAXSPECIESWIDTH; |
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48 | extern int MAXINFOWIDTH; |
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49 | extern long ED4_counter; |
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50 | |
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51 | // use ED4_init_notFoundMessage and ED4_finish_and_show_notFoundMessage to |
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52 | // modify the following elements |
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53 | #define MAX_SHOWN_MISSING_SPECIES 200U // limit no of missing species/data printed into not_found_message |
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54 | extern size_t not_found_counter; // nr of species which haven't been found |
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55 | extern GBS_strstruct *not_found_message; // error message containing (some) missing/unloadable species |
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56 | |
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57 | extern long max_seq_terminal_length; // global maximum of sequence terminal length |
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58 | extern ED4_EDITMODI awar_edit_mode; |
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59 | extern long awar_edit_rightward; // 0 = leftward, 1 = rightward |
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60 | extern bool move_cursor; // only needed for editing in consensus |
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61 | extern bool DRAW; |
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62 | |
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63 | // globally used defines and flags |
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64 | |
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65 | #define INFINITE -1 |
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66 | #define SLIDER_OFFSET 5 |
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67 | |
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68 | // these are recommended for accessing ED4_extension: |
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69 | #define X_POS 0 |
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70 | #define Y_POS 1 |
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71 | #define WIDTH 0 |
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72 | #define HEIGHT 1 |
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73 | |
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74 | // size of some display elements: |
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75 | #define BRACKETWIDTH 11 |
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76 | #define SPACERHEIGHT 5 |
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77 | #define SPACERNOCONSENSUSHEIGHT 15 // height of spacer at top of group (used if consensus is hidden and group is folded) |
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78 | #define SEQUENCEINFOSIZE 50 |
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79 | #define TREETERMINALSIZE 100 |
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80 | |
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81 | #define COLUMN_STAT_ROW_HEIGHT(font_height) (2.2*(font_height)) // each row contains 2 sub-rows (plus some xtra space) |
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82 | #define COLUMN_STAT_ROWS 4 |
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83 | |
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84 | #define MAX_POSSIBLE_SEQ_LENGTH 100000000 |
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85 | |
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86 | #define MAXCHARTABLE 256 // Maximum of Consensustable |
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87 | #define MAXWINDOWS 5 |
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88 | |
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89 | #define AWAR_EDIT_MODE "tmp/edit4/edit_mode" |
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90 | #define AWAR_INSERT_MODE "tmp/edit4/insert_mode" |
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91 | #define AWAR_EDIT_SECURITY_LEVEL "tmp/edit4/security_level" |
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92 | #define AWAR_EDIT_SECURITY_LEVEL_ALIGN "tmp/edit4/security_level_align" |
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93 | #define AWAR_EDIT_SECURITY_LEVEL_CHANGE "tmp/edit4/security_level_change" |
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94 | #define AWAR_EDIT_CONFIGURATION "tmp/edit4/configuration" |
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95 | |
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96 | #define AWAR_EDIT_SEQ_POSITION "tmp/edit4/jump_to_position%d" // used to create ED4_window.awar_path_for_cursor[] |
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97 | #define AWAR_EDIT_ECOLI_POSITION "tmp/edit4/cursor_ref_ecoli%d" // used to create ED4_window.awar_path_for_Ecoli[] |
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98 | #define AWAR_EDIT_BASE_POSITION "tmp/edit4/cursor_to_basepos%d" // used to create ED4_window.awar_path_for_basePos[] |
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99 | #define AWAR_EDIT_IUPAC "tmp/edit4/iupac%d" // used to create ED4_window.awar_path_for_IUPAC[] |
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100 | #define AWAR_EDIT_HELIXNR "tmp/edit4/helixnr%d" // used to create ED4_window.awar_path_for_helixNr[] |
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101 | |
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102 | #define AWAR_FIELD_CHOSEN "tmp/edit4/field_chosen" // used for field selection box |
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103 | |
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104 | #define AWAR_EDIT_TITLE_MODE "edit4/title_mode" |
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105 | #define AWAR_EDIT_HELIX_SPACING "edit4/helix_add_spacing" |
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106 | #define AWAR_EDIT_TERMINAL_SPACING "edit4/terminal_add_spacing" |
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107 | |
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108 | #define CHARACTEROFFSET 5 // spacer-width left of text-terminal |
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109 | #define CONSENSUS "Consensusfunktion" |
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110 | |
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111 | typedef long ED4_index; |
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112 | |
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113 | #define ED4_SCROLL_OVERLAP 20 // 15 Pixels overlap |
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114 | |
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115 | |
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116 | enum ED4_level { // has to contain bit values |
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117 | ED4_L_INVALID = -1U, |
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118 | ED4_L_NO_LEVEL = 0, |
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119 | ED4_L_ROOT = 0x1, |
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120 | ED4_L_DEVICE = 0x2, |
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121 | ED4_L_AREA = 0x4, |
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122 | ED4_L_MULTI_SPECIES = 0x8, |
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123 | ED4_L_SPECIES = 0x10, |
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124 | ED4_L_MULTI_SEQUENCE = 0x20, |
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125 | ED4_L_SEQUENCE = 0x40, |
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126 | ED4_L_TREE = 0x80, |
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127 | ED4_L_SPECIES_NAME = 0x100, |
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128 | ED4_L_SEQUENCE_INFO = 0x200, |
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129 | ED4_L_SEQUENCE_STRING = 0x400, |
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130 | ED4_L_ORF = 0x800, |
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131 | ED4_L_SPACER = 0x1000, |
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132 | ED4_L_LINE = 0x2000, |
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133 | ED4_L_MULTI_NAME = 0x4000, |
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134 | ED4_L_NAME_MANAGER = 0x8000, |
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135 | ED4_L_GROUP = 0x10000, |
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136 | ED4_L_ROOTGROUP = 0x20000, |
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137 | ED4_L_BRACKET = 0x40000, |
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138 | ED4_L_PURE_TEXT = 0x80000, |
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139 | ED4_L_COL_STAT = 0x100000, |
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140 | }; |
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141 | |
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142 | enum ED4_datamode { |
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143 | ED4_D_SPECIES, |
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144 | ED4_D_EXTENDED |
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145 | }; |
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146 | |
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147 | |
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148 | enum ED4_movemode { |
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149 | ED4_M_NO_MOVE = 0, |
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150 | ED4_M_HORIZONTAL = 1, |
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151 | ED4_M_VERTICAL = 2, |
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152 | ED4_M_FREE = 4 |
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153 | }; |
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154 | |
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155 | enum ED4_returncode { |
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156 | ED4_R_OK = 0, |
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157 | ED4_R_WARNING = 1, |
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158 | ED4_R_IMPOSSIBLE = 2, |
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159 | ED4_R_ERROR = 4, |
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160 | ED4_R_BREAK = 8, |
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161 | ED4_R_DESASTER = 16, |
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162 | ED4_R_ALL = 0x7fffffff |
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163 | }; |
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164 | |
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165 | enum ED4_AREA_LEVEL { |
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166 | ED4_A_TOP_AREA, |
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167 | ED4_A_MIDDLE_AREA, |
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168 | ED4_A_BOTTOM_AREA, |
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169 | ED4_A_ERROR |
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170 | }; |
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171 | |
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172 | enum ED4_properties { |
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173 | ED4_P_NO_PROP = 0, |
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174 | ED4_P_IS_MANAGER = 1, |
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175 | ED4_P_IS_TERMINAL = 2, |
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176 | ED4_P_HORIZONTAL = 4, |
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177 | ED4_P_VERTICAL = 8, |
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178 | ED4_P_TMP = 16, |
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179 | ED4_P_SELECTABLE = 32, |
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180 | ED4_P_DRAGABLE = 64, |
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181 | ED4_P_MOVABLE = 128, |
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182 | ED4_P_IS_HANDLE = 256, |
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183 | ED4_P_CURSOR_ALLOWED = 512, |
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184 | // ED4_P_ = 1024, |
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185 | // ED4_P_ = 2048, |
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186 | ED4_P_IS_FOLDED = 4096, // Flag whether group is folded or not |
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187 | ED4_P_CONSENSUS_RELEVANT = 8192, // contains information relevant for consensus |
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188 | ED4_P_ALIGNMENT_DATA = 16384, // contains aligned data (also SAIs) |
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189 | ED4_P_ALL = 0x7fffffff |
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190 | }; |
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191 | |
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192 | enum ED4_cursor_move { |
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193 | ED4_C_UP, |
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194 | ED4_C_DOWN, |
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195 | ED4_C_LEFT, |
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196 | ED4_C_RIGHT, |
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197 | ED4_C_NONE |
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198 | }; |
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199 | |
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200 | enum ED4_update_flag { |
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201 | ED4_U_UP = 0, |
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202 | ED4_U_UP_DOWN |
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203 | }; |
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204 | |
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205 | enum ED4_border_flag { |
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206 | ED4_B_BORDER, |
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207 | ED4_B_INDENT, |
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208 | ED4_B_BOTTOM_AREA |
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209 | }; |
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210 | |
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211 | enum ED4_consensus { |
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212 | ED4_K_ADD, |
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213 | ED4_K_SUB |
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214 | }; |
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215 | |
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216 | enum ED4_alignment { |
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217 | ED4_A_DEFAULT, |
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218 | ED4_A_CONTAINER |
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219 | }; |
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220 | |
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221 | enum ED4_aa_seq_flag { |
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222 | ED4_AA_FRWD_1, |
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223 | ED4_AA_FRWD_2, |
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224 | ED4_AA_FRWD_3, |
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225 | ED4_AA_RVRS_1, |
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226 | ED4_AA_RVRS_2, |
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227 | ED4_AA_RVRS_3, |
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228 | ED4_AA_DB_FIELD |
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229 | }; |
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230 | |
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231 | enum ED4_direction { |
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232 | ED4_D_VERTICAL, |
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233 | ED4_D_HORIZONTAL, |
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234 | ED4_D_ALL_DIRECTION, |
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235 | }; |
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236 | |
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237 | |
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238 | class ED4_base; |
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239 | class ED4_terminal; |
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240 | class ED4_species_name_terminal; |
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241 | |
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242 | struct ED4_move_info |
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243 | { |
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244 | ED4_base *object; // object to be moved |
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245 | AW_pos end_x, end_y; // position to move to |
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246 | ED4_movemode mode; // move mode |
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247 | ED4_level preferred_parent; // level to move to |
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248 | }; |
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249 | |
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250 | struct ED4_selection_entry { |
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251 | AW_pos drag_off_x, drag_off_y; |
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252 | AW_pos drag_old_x, drag_old_y; |
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253 | AW_pos actual_width, actual_height; |
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254 | int old_event_y; |
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255 | |
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256 | ED4_species_name_terminal *object; |
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257 | }; |
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258 | |
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259 | |
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260 | |
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261 | struct ED4_extension // contains info about graphical properties |
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262 | { |
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263 | AW_pos position[2]; // upper left corner (pos_x, pos_y) in relation to parent |
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264 | // !!! WARNING: This is a hack!!! Every time you change 'position' you HAVE TO call ED4_base::touch_world_cache() !!! |
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265 | |
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266 | AW_pos size[2]; // width and height |
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267 | ED4_index y_folded; // remember old position of consensus when folding group |
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268 | |
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269 | AW::Vector get_size() const { return AW::Vector(size[WIDTH], size[HEIGHT]); } |
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270 | AW::Vector get_parent_offset() const { return AW::Vector(position[X_POS], position[Y_POS]); } |
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271 | |
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272 | #if defined(IMPLEMENT_DUMP) |
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273 | void dump(size_t indent) const; |
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274 | #endif // IMPLEMENT_DUMP |
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275 | }; |
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276 | |
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277 | struct ED4_scroll_picture { |
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278 | bool scroll; |
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279 | long old_x; |
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280 | long old_y; |
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281 | |
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282 | ED4_scroll_picture() : scroll(false), old_x(0), old_y(0) {} |
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283 | }; |
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284 | |
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285 | enum ED4_CursorJumpType { |
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286 | ED4_JUMP_CENTERED, // centers the cursor |
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287 | ED4_JUMP_KEEP_VISIBLE, // keeps the cursor visible (keeps a fixed margin) |
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288 | ED4_JUMP_KEEP_POSITION, // paint cursor at previous position |
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289 | }; |
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290 | |
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291 | struct ED4_work_info |
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292 | { |
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293 | AW_event event; |
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294 | GBDATA *gb_data; |
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295 | char *string; // pointer to consensus; only if editing the consensus |
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296 | long char_position; // screen position after cursor |
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297 | |
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298 | bool rightward; // contains direction of editing (0 = leftward, 1 = rightward) |
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299 | |
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300 | ED4_EDITMODI mode; |
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301 | |
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302 | bool is_sequence; // ==1 -> special handling for sequences |
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303 | bool cannot_handle; // if TRUE then cannot edit |
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304 | |
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305 | ED4_CursorJumpType cursor_jump; |
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306 | bool refresh_needed; |
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307 | |
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308 | long out_seq_position; // sequence position (after editing) |
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309 | |
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310 | char *out_string; // nur falls new malloc |
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311 | |
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312 | int repeat_count; // only for keystrokes: contains # of times key should be repeated |
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313 | |
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314 | ED4_terminal *working_terminal; // this contains the terminal |
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315 | }; |
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316 | |
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317 | |
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318 | struct ED4_update_info // if you add new elements, please ensure to initialize them in ED4_base::ED4_base() |
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319 | { |
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320 | unsigned int resize : 1; |
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321 | unsigned int refresh : 1; |
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322 | unsigned int clear_at_refresh : 1; |
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323 | unsigned int linked_to_folding_line : 1; |
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324 | unsigned int linked_to_scrolled_rectangle : 1; |
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325 | unsigned int refresh_horizontal_scrolling : 1; |
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326 | unsigned int refresh_vertical_scrolling : 1; |
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327 | unsigned int delete_requested : 1; |
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328 | unsigned int update_requested : 1; |
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329 | |
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330 | void set_clear_at_refresh(int value) { |
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331 | clear_at_refresh = value; |
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332 | } |
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333 | void set_refresh(int value) { |
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334 | refresh = value; |
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335 | } |
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336 | void set_resize(int value) { |
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337 | resize = value; |
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338 | } |
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339 | |
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340 | #if defined(IMPLEMENT_DUMP) |
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341 | void dump(size_t indent) const; |
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342 | #endif // IMPLEMENT_DUMP |
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343 | }; |
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344 | |
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345 | struct ED4_coords |
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346 | { |
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347 | long top_area_x, |
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348 | top_area_y, |
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349 | top_area_height, |
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350 | |
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351 | middle_area_x, |
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352 | middle_area_y, |
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353 | |
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354 | window_width, // of whole window (top and middle area and ... ) |
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355 | window_height, // of whole window (top and middle area and ... ) |
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356 | |
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357 | window_upper_clip_point, // absolute coordinate of upper visible clipping point in middle area |
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358 | window_lower_clip_point, // absolute coordinate of lower visible clipping point in middle area |
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359 | window_left_clip_point, // absolute coordinate of left visible clipping point in top and middle area |
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360 | window_right_clip_point; // absolute coordinate of right visible clipping point in top and middle area |
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361 | |
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362 | void clear() { |
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363 | top_area_x = 0; |
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364 | top_area_y = 0; |
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365 | top_area_height = 0; |
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366 | |
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367 | middle_area_x = 0; |
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368 | middle_area_y = 0; |
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369 | |
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370 | window_width = 0; |
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371 | window_height = 0; |
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372 | |
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373 | window_upper_clip_point = 0; |
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374 | window_lower_clip_point = 0; |
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375 | window_left_clip_point = 0; |
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376 | window_right_clip_point = 0; |
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377 | } |
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378 | }; |
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379 | |
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380 | #else |
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381 | #error ed4_defs.hxx included twice |
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382 | #endif |
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