|
Last change
on this file was
11821,
checked in by westram, 10 years ago
|
- prepare MrBayes-32bit compilation
- pass down ARB_64 into submakefiles
- generate dependencies in MrBayes Makefile (fixes missing dependency from config.h)
- pass ARB_64 and DARWIN to gcc and use them to define flags in config.h:
- ARB_64 → SSE_ENABLED + _64BIT
- ARB_DARWIN → MAC_VERSION (UNIX_VERSION otherwise)
- let 32bit-compile fail for now
|
|
File size:
3.3 KB
|
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| 1 | # MrBayes Makefile modified for use in ARB by Arne Boeckmann (August 2013) |
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| 2 | |
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| 3 | .SUFFIXES: .o .c .depend |
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| 4 | |
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| 5 | CC ?= gcc |
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| 6 | CFLAGS := -O3 -ffast-math -w -DNDEBUG -DUSECONFIG_H |
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| 7 | LDLIBS := -lreadline -lm |
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| 8 | |
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| 9 | ifeq ($(ARB_64),1) |
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| 10 | CFLAGS += -DARB_64 |
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| 11 | endif |
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| 12 | ifeq ($(DARWIN),1) |
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| 13 | CFLAGS += -DARB_DARWIN |
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| 14 | endif |
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| 15 | |
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| 16 | # work around bug in centos5 -- ep 8/7/2013 |
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| 17 | # (linking readline causes missing symbols unless also linking ncurses) |
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| 18 | # see https://bugzilla.redhat.com/show_bug.cgi?id=499837 |
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| 19 | HAVE_CENTOS5 := $(shell test -f /etc/redhat-release && grep -q "release 5" /etc/redhat-release && echo true) |
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| 20 | ifeq ($(HAVE_CENTOS5),true) |
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| 21 | LDLIBS += -lncurses |
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| 22 | endif |
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| 23 | |
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| 24 | OBJECTS := mb.o bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o tree.o utils.o mbbeagle.o best.o |
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| 25 | |
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| 26 | mb: $(OBJECTS) |
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| 27 | $(CC) $(CFLAGS) $(OBJECTS) $(LDLIBS) -o $@ |
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| 28 | |
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| 29 | %.o: %.c |
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| 30 | $(CC) $< $(CFLAGS) -c -o $@ |
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| 31 | |
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| 32 | clean: |
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| 33 | rm -f *.o *~ mb |
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| 34 | |
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| 35 | DEPENDS := $(OBJECTS:.o=.depend) |
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| 36 | depends: $(DEPENDS) |
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| 37 | echo "DEPENDS='$(DEPENDS)'" |
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| 38 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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| 39 | @rm $(DEPENDS) |
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| 40 | $(DEPENDS): depend.init |
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| 41 | depend.init: |
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| 42 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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| 43 | .c.depend: |
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| 44 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $(CFLAGS) $< 2>/dev/null >$@ |
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| 45 | |
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| 46 | .PHONY: depends depend.init clean |
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| 47 | |
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| 48 | # DO NOT DELETE |
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| 49 | |
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| 50 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 51 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE/MrBayes) |
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| 52 | |
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| 53 | bayes.o: bayes.h |
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| 54 | bayes.o: command.h |
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| 55 | bayes.o: config.h |
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| 56 | bayes.o: globals.h |
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| 57 | bayes.o: mb.h |
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| 58 | bayes.o: mcmc.h |
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| 59 | bayes.o: model.h |
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| 60 | bayes.o: sumt.h |
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| 61 | bayes.o: utils.h |
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| 62 | |
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| 63 | best.o: best.h |
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| 64 | best.o: command.h |
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| 65 | best.o: config.h |
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| 66 | best.o: globals.h |
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| 67 | best.o: mb.h |
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| 68 | best.o: mbmath.h |
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| 69 | best.o: mcmc.h |
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| 70 | best.o: model.h |
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| 71 | best.o: sumt.h |
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| 72 | best.o: tree.h |
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| 73 | best.o: utils.h |
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| 74 | |
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| 75 | command.o: bayes.h |
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| 76 | command.o: command.h |
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| 77 | command.o: config.h |
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| 78 | command.o: globals.h |
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| 79 | command.o: mb.h |
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| 80 | command.o: mbbeagle.h |
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| 81 | command.o: mcmc.h |
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| 82 | command.o: model.h |
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| 83 | command.o: plot.h |
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| 84 | command.o: sump.h |
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| 85 | command.o: sumt.h |
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| 86 | command.o: tree.h |
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| 87 | command.o: utils.h |
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| 88 | |
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| 89 | mbbeagle.o: config.h |
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| 90 | mbbeagle.o: globals.h |
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| 91 | mbbeagle.o: mb.h |
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| 92 | mbbeagle.o: mbbeagle.h |
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| 93 | mbbeagle.o: mcmc.h |
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| 94 | mbbeagle.o: model.h |
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| 95 | mbbeagle.o: utils.h |
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| 96 | |
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| 97 | mbmath.o: bayes.h |
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| 98 | mbmath.o: config.h |
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| 99 | mbmath.o: globals.h |
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| 100 | mbmath.o: mb.h |
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| 101 | mbmath.o: mbmath.h |
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| 102 | mbmath.o: model.h |
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| 103 | mbmath.o: utils.h |
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| 104 | |
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| 105 | mcmc.o: bayes.h |
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| 106 | mcmc.o: best.h |
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| 107 | mcmc.o: command.h |
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| 108 | mcmc.o: config.h |
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| 109 | mcmc.o: globals.h |
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| 110 | mcmc.o: mb.h |
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| 111 | mcmc.o: mbbeagle.h |
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| 112 | mcmc.o: mbmath.h |
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| 113 | mcmc.o: mcmc.h |
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| 114 | mcmc.o: model.h |
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| 115 | mcmc.o: plot.h |
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| 116 | mcmc.o: sump.h |
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| 117 | mcmc.o: sumt.h |
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| 118 | mcmc.o: tree.h |
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| 119 | mcmc.o: utils.h |
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| 120 | |
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| 121 | model.o: bayes.h |
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| 122 | model.o: best.h |
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| 123 | model.o: command.h |
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| 124 | model.o: config.h |
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| 125 | model.o: globals.h |
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| 126 | model.o: mb.h |
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| 127 | model.o: mbmath.h |
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| 128 | model.o: mcmc.h |
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| 129 | model.o: model.h |
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| 130 | model.o: tree.h |
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| 131 | model.o: utils.h |
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| 132 | |
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| 133 | plot.o: bayes.h |
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| 134 | plot.o: command.h |
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| 135 | plot.o: config.h |
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| 136 | plot.o: globals.h |
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| 137 | plot.o: mb.h |
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| 138 | plot.o: plot.h |
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| 139 | plot.o: sump.h |
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| 140 | plot.o: utils.h |
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| 141 | |
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| 142 | sump.o: bayes.h |
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| 143 | sump.o: command.h |
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| 144 | sump.o: config.h |
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| 145 | sump.o: globals.h |
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| 146 | sump.o: mb.h |
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| 147 | sump.o: mbmath.h |
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| 148 | sump.o: mcmc.h |
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| 149 | sump.o: sump.h |
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| 150 | sump.o: utils.h |
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| 151 | |
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| 152 | sumt.o: bayes.h |
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| 153 | sumt.o: command.h |
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| 154 | sumt.o: config.h |
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| 155 | sumt.o: globals.h |
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| 156 | sumt.o: mb.h |
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| 157 | sumt.o: mbmath.h |
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| 158 | sumt.o: mcmc.h |
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| 159 | sumt.o: model.h |
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| 160 | sumt.o: sump.h |
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| 161 | sumt.o: sumt.h |
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| 162 | sumt.o: tree.h |
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| 163 | sumt.o: utils.h |
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| 164 | |
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| 165 | tree.o: bayes.h |
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| 166 | tree.o: best.h |
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| 167 | tree.o: command.h |
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| 168 | tree.o: config.h |
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| 169 | tree.o: globals.h |
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| 170 | tree.o: mb.h |
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| 171 | tree.o: mbmath.h |
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| 172 | tree.o: mcmc.h |
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| 173 | tree.o: model.h |
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| 174 | tree.o: tree.h |
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| 175 | tree.o: utils.h |
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| 176 | |
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| 177 | utils.o: config.h |
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| 178 | utils.o: globals.h |
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| 179 | utils.o: mb.h |
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| 180 | utils.o: utils.h |
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