| 1 | // ================================================================ // |
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| 2 | // // |
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| 3 | // File : MP_main.cxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // ================================================================ // |
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| 10 | |
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| 11 | #include <multi_probe.hxx> |
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| 12 | |
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| 13 | #include "MP_probe.hxx" |
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| 14 | #include "MultiProbe.hxx" |
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| 15 | #include "mp_proto.hxx" |
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| 16 | |
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| 17 | #include <aw_root.hxx> |
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| 18 | #include <aw_awar_defs.hxx> |
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| 19 | #include <awt_canvas.hxx> |
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| 20 | |
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| 21 | awar_vars mp_gl_awars; |
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| 22 | MP_Main *mp_main = NULL; |
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| 23 | char MP_probe_tab[256]; // zum checken, ob ein eingegebener Sondenstring ok ist |
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| 24 | int remembered_mismatches; |
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| 25 | int anz_elem_marked = 0; |
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| 26 | int anz_elem_unmarked = 0; |
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| 27 | bool pt_server_different = false; |
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| 28 | |
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| 29 | MP_Main::MP_Main(AW_root *awr, AWT_canvas *canvas) { |
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| 30 | aw_root = awr; |
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| 31 | scr = canvas; |
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| 32 | stc = NULL; |
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| 33 | create_awars(); |
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| 34 | mp_window = new MP_Window(aw_root, canvas->gb_main); |
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| 35 | p_eval = NULL; |
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| 36 | } |
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| 37 | |
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| 38 | MP_Main::~MP_Main() |
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| 39 | { |
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| 40 | aw_root->awar_int(MP_AWAR_QUALITY)->remove_callback(MP_gen_quality); |
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| 41 | aw_root->awar_int(MP_AWAR_SINGLEMISMATCHES)->remove_callback(MP_gen_singleprobe); |
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| 42 | aw_root->awar_int(MP_AWAR_MISMATCHES)->remove_callback(MP_modify_selected); |
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| 43 | |
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| 44 | delete p_eval; |
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| 45 | delete stc; |
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| 46 | delete mp_window; |
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| 47 | |
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| 48 | new_pt_server = true; |
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| 49 | } |
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| 50 | |
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| 51 | void MP_Main::destroy_probe_eval() |
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| 52 | { |
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| 53 | delete p_eval; |
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| 54 | p_eval = NULL; |
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| 55 | } |
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| 56 | |
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| 57 | ProbeValuation *MP_Main::new_probe_eval(char **field, int size, int *array, int *single_mismatch) |
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| 58 | { |
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| 59 | p_eval = new ProbeValuation(field, size, array, single_mismatch); |
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| 60 | p_eval->set_act_gen(new Generation(p_eval->get_max_init_for_gen(), 1)); // erste Generation = Ausgangspopulation |
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| 61 | return p_eval; |
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| 62 | } |
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| 63 | |
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| 64 | void MP_Main::create_awars() |
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| 65 | { |
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| 66 | aw_root->awar_string(MP_AWAR_SEQIN); |
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| 67 | aw_root->awar_string(MP_AWAR_SELECTEDPROBES)->add_target_var(& mp_gl_awars.selected_probes); |
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| 68 | aw_root->awar_string(MP_AWAR_PROBELIST)->add_target_var(& mp_gl_awars.probelist); |
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| 69 | aw_root->awar_int(MP_AWAR_WEIGHTEDMISMATCHES)->add_target_var(& mp_gl_awars.weightedmismatches)->write_int(2); |
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| 70 | aw_root->awar_int(MP_AWAR_COMPLEMENT, 1)->add_target_var(& mp_gl_awars.complement); |
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| 71 | aw_root->awar_int(MP_AWAR_MISMATCHES)->add_target_var(& mp_gl_awars.no_of_mismatches)->add_callback(MP_modify_selected); |
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| 72 | remembered_mismatches = 0; // derselbe initiale Wert wie mp_gl_awars.no_of_mismatches |
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| 73 | aw_root->awar_int(MP_AWAR_PTSERVER)->add_target_var(& mp_gl_awars.ptserver); |
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| 74 | aw_root->awar_string(MP_AWAR_RESULTPROBES)->add_target_var(& mp_gl_awars.result_probes); |
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| 75 | aw_root->awar_string(MP_AWAR_RESULTPROBESCOMMENT)->add_target_var(& mp_gl_awars.result_probes_comment); |
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| 76 | aw_root->awar_int(MP_AWAR_NOOFPROBES)->add_target_var(& mp_gl_awars.no_of_probes)->write_int(3); |
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| 77 | aw_root->awar_int(MP_AWAR_QUALITY)->add_target_var(& mp_gl_awars.probe_quality)->add_callback(MP_gen_quality)->write_int(QUALITYDEFAULT); |
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| 78 | aw_root->awar_int(MP_AWAR_SINGLEMISMATCHES)->add_target_var(& mp_gl_awars.singlemismatches)->add_callback(MP_gen_singleprobe); |
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| 79 | aw_root->awar_float(MP_AWAR_OUTSIDEMISMATCHES)->add_target_var(& mp_gl_awars.outside_mismatches_difference)->write_float(1.0); |
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| 80 | aw_root->awar_int(MP_AWAR_QUALITYBORDER1)->add_target_var(& mp_gl_awars.qualityborder_best)->write_int(5); |
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| 81 | |
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| 82 | aw_root->awar_int(MP_AWAR_EMPHASIS)->add_target_var(& mp_gl_awars.emphasis)->write_int(0); |
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| 83 | aw_root->awar_float(MP_AWAR_GREYZONE)->add_target_var(& mp_gl_awars.greyzone)->write_float(0.0); |
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| 84 | aw_root->awar_int(MP_AWAR_ECOLIPOS)->add_target_var(& mp_gl_awars.ecolipos)->write_int(0); |
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| 85 | |
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| 86 | aw_root->awar_int(MP_AWAR_AUTOADVANCE, 1); |
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| 87 | } |
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| 88 | |
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| 89 | |
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| 90 | static void create_tables() |
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| 91 | { |
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| 92 | int i; |
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| 93 | |
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| 94 | // probe_tab |
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| 95 | for (i=0; i<256; i++) |
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| 96 | MP_probe_tab[i] = false; |
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| 97 | |
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| 98 | const unsigned char *true_chars = (const unsigned char *)"atgucnATGUCN"; |
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| 99 | for (i = 0; true_chars[i]; ++i) { |
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| 100 | MP_probe_tab[true_chars[i]] = true; |
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| 101 | } |
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| 102 | } |
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| 103 | |
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| 104 | AW_window *create_multiprobe_window(AW_root *root, AWT_canvas *canvas) { |
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| 105 | if (!mp_main) { |
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| 106 | create_tables(); |
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| 107 | mp_main = new MP_Main(root, canvas); |
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| 108 | } |
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| 109 | |
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| 110 | AW_window *aw = mp_main->get_mp_window()->get_window(); |
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| 111 | aw->show(); |
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| 112 | |
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| 113 | return aw; |
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| 114 | } |
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| 115 | |
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