| 1 | // =========================================================== // |
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| 2 | // // |
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| 3 | // File : awt_seq_colors.hxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // =========================================================== // |
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| 10 | |
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| 11 | #ifndef AWT_SEQ_COLORS_HXX |
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| 12 | #define AWT_SEQ_COLORS_HXX |
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| 13 | |
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| 14 | |
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| 15 | #define AWAR_SEQ_PATH "awt/seq_colors/" |
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| 16 | #define AWAR_SEQ_NAME_STRINGS_TEMPLATE AWAR_SEQ_PATH "strings/elem_%i" |
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| 17 | #define AWAR_SEQ_NAME_TEMPLATE AWAR_SEQ_PATH "set_%i/elem_%i" |
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| 18 | #define AWAR_SEQ_NAME_SELECTOR_NA AWAR_SEQ_PATH "na/select" |
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| 19 | #define AWAR_SEQ_NAME_SELECTOR_AA AWAR_SEQ_PATH "aa/select" |
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| 20 | |
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| 21 | #define AWT_SEQ_COLORS_MAX_SET 5 |
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| 22 | #define AWT_SEQ_COLORS_MAX_ELEMS 28 // has to be a even number! |
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| 23 | |
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| 24 | class AWT_seq_colors { |
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| 25 | int base_gc; |
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| 26 | AW_CL cd1; |
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| 27 | AW_CL cd2; |
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| 28 | AW_CB callback; |
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| 29 | int cbexists; |
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| 30 | |
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| 31 | public: |
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| 32 | AW_window *aww; |
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| 33 | GBDATA *gb_def; |
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| 34 | |
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| 35 | void run_cb(); |
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| 36 | void reload(); |
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| 37 | |
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| 38 | // real public |
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| 39 | char char_2_gc[256]; // translate to gc |
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| 40 | char char_2_char[256]; // translate to char |
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| 41 | char char_2_gc_aa[256]; // translate to gc - for aminoacid sequence |
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| 42 | char char_2_char_aa[256]; // translate to char - for aminoacid sequence |
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| 43 | |
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| 44 | AWT_seq_colors(GBDATA *gb_default, int base_gc,AW_CB cb,AW_CL cd1,AW_CL cd2); |
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| 45 | }; |
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| 46 | |
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| 47 | class AWT_reference{ |
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| 48 | GBDATA *gb_main; |
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| 49 | int ref_len; |
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| 50 | char *reference; |
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| 51 | char *init_species_name; |
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| 52 | |
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| 53 | public: |
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| 54 | AWT_reference(GBDATA *gb_main); |
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| 55 | ~AWT_reference(); |
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| 56 | |
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| 57 | void init(); |
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| 58 | void init(const char *species_name, const char *alignment_name); |
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| 59 | void init(const char *name, const char *sequence_data, int len); |
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| 60 | |
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| 61 | void expand_to_length(int len); // make sure that reference is at least len long |
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| 62 | |
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| 63 | int convert(char c,int pos) const { return (c=='-' || c!=reference[pos]) ? c : '.'; } |
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| 64 | int reference_species_is(const char *species_name) const { return init_species_name ? strcmp(species_name, init_species_name)==0 : 0; } |
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| 65 | }; |
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| 66 | |
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| 67 | AW_window *create_seq_colors_window(AW_root *awr, AWT_seq_colors *asc); |
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| 68 | |
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| 69 | |
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| 70 | #else |
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| 71 | #error awt_seq_colors.hxx included twice |
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| 72 | #endif // AWT_SEQ_COLORS_HXX |
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