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1 | // ================================================================ // |
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2 | // // |
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3 | // File : Location.h // |
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4 | // Purpose : // |
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5 | // // |
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6 | // Coded by Ralf Westram (coder@reallysoft.de) in November 2006 // |
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7 | // Institute of Microbiology (Technical University Munich) // |
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8 | // http://www.arb-home.de/ // |
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9 | // // |
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10 | // ================================================================ // |
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11 | #ifndef LOCATION_H |
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12 | #define LOCATION_H |
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13 | |
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14 | #ifndef SMARTPTR_H |
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15 | #include <smartptr.h> |
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16 | #endif |
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17 | #ifndef TYPES_H |
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18 | #include "types.h" |
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19 | #endif |
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20 | |
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21 | |
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22 | typedef vector<int> intVector; |
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23 | typedef vector<char> charVector; |
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24 | typedef vector<bool> boolVector; |
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25 | |
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26 | class GEN_position; |
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27 | |
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28 | enum LocationJoinType { |
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29 | LJT_UNDEF, // undefined |
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30 | LJT_NOT_JOINED, // location does not contain multiple parts |
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31 | LJT_JOIN, // sequence data may be joined |
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32 | LJT_ORDER, // nothing is implied about the reasonableness about joining |
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33 | }; |
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34 | |
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35 | |
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36 | struct Location : public Noncopyable { |
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37 | Location() {} |
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38 | virtual ~Location() {} |
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39 | |
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40 | virtual int count() const = 0; |
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41 | virtual bool isInRange(long pos1, long pos2) const = 0; |
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42 | virtual void save(GEN_position *into, bool complementary) const = 0; |
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43 | virtual LocationJoinType getJoinType() const = 0; |
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44 | |
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45 | GEN_position *create_GEN_position() const; |
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46 | }; |
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47 | |
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48 | typedef SmartPtr<Location> LocationPtr; |
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49 | |
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50 | LocationPtr parseLocation(const string& source); |
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51 | |
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52 | #else |
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53 | #error Location.h included twice |
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54 | #endif // LOCATION_H |
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55 | |
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