source: tags/arb_5.1/HELP_SOURCE/oldhelp/arb_export.hlp

#Please insert up references in the next lines (line starts with keyword UP)
UP      arb.hlp
UP      glossary.hlp
UP      mark.hlp
UP      nt_align_select.hlp

#Please insert subtopic references  (line starts with keyword SUB)
#SUB    export_format.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE           Export Selected Species and Sequences

OCCURRENCE      ARB_NT/File/Export Foreign Format

DESCRIPTION
                Exports the selected 'alignment' of some or all 'species' in
                various formats.

                Choose the 'EXPORT FOREIGN FORMAT' option from the 'File' menu
                        to display the 'ARB EXPORT' window.

                Select a formate from the corresponding subwindow.

                Choose whether to export all or only marked species.

                Choose a filter to export only selected columns.

                Select a compression method:
                       - 'none' preserves the alignment information
                       - 'vertical gaps' removes all columns containing only gaps
                       - 'all gaps' completely remove the alignment information

                Check 'Cut stop codon' to cut off the sequence at the stop codon.

                Define whether the data should be written to one or to multiple
                        files by clicking on the checkbox after the 'Should the
                        data be written to multiple files:' prompt. In the
                        multiple file mode, each 'species' is written to its own
                        file.

                Define an output file name by selecting from the 'Directories
                        and Files' subwindow or by typing it to the 'Output File
                        Name' subwindow. In the multiple file mode, the
                        resulting filenames are created by appending the
                        'species name' to the specified output filename
                        separated by underscores (filename_species name).

                Press the <GO> button


        EXPERT:

                The program reads the selected format
                (formats is $ARBHOME/lib/export/*.eft) and replaces
                all references to species information by the value of
                the reference.
                See LINK{export_format.hlp} for more information.

NOTES           The formates can be customized (see LINK{export_format.hlp})

                For a list of common database entries see LINK{sp_info.hlp}.

EXAMPLES        None

BUGS            No bugs known