| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP manual.hlp |
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| 4 | UP arb_edit4.hlp |
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| 5 | UP e4.hlp |
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| 6 | |
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| 7 | #Please insert subtopic references (line starts with keyword SUB) |
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| 8 | #SUB subtopic.hlp |
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| 9 | |
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| 10 | TITLE ARB_EDIT4 F.A.Q. |
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| 11 | |
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| 12 | OCCURRENCE General |
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| 13 | |
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| 14 | NOTE This file is no longer kept up to date. |
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| 15 | |
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| 16 | If you don't find an answer here move to LINK{http://arb-home.de/arb_edit.html}. |
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| 17 | |
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| 18 | DESCRIPTION General Q & A on ARB_EDIT4 |
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| 19 | |
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| 20 | |
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| 21 | SECTION How to move around in ARB_EDIT: |
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| 22 | |
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| 23 | How to define the alignment detail visualized in the ARB_EDIT4 window? |
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| 24 | |
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| 25 | Use the scroll bars: |
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| 26 | |
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| 27 | click on the triangles to move one position left/right or |
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| 28 | one line up/down drag the rectangles while keeping the |
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| 29 | left mouse button pressed position the cursor in the |
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| 30 | scroll bar area and press the middle mouse button |
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| 31 | |
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| 32 | How to position the cursor: |
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| 33 | |
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| 34 | to visualize the editor cursor, position the mouse cursor |
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| 35 | and press the left button (note: the cursor is placed |
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| 36 | between the sequences positions; counting is for the |
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| 37 | position next right to the cursor) |
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| 38 | |
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| 39 | to move the editor cursor (it has to be placed somewhere |
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| 40 | before) to a given alignment position type a (position) |
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| 41 | number in one of the 'Position' (absolute alignment |
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| 42 | position - characters and gaps), 'E.coli' (homologous |
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| 43 | position in the E. coli standard), 'Base' (position in the |
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| 44 | current sequence - only characters, no gaps) or 'Helix #' |
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| 45 | (5'-end of 3' helix half; type a '-' for 5'-end of the 5' |
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| 46 | helix half) and move the mouse cursor back to the editing |
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| 47 | area of the ARB_EDIT4 window. |
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| 48 | |
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| 49 | to move the editor cursor to the next character (gap |
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| 50 | symbols neglected) press the 'ctrl' and one of 'right', |
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| 51 | 'left', 'up' or 'down' keys. |
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| 52 | |
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| 53 | How to compress and uncompress groups? |
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| 54 | |
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| 55 | click (left mouse button) on the triangle on the top of |
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| 56 | the group brackets |
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| 57 | |
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| 58 | How to move sequences? |
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| 59 | |
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| 60 | ensure the move mode has been activated (by pressing the |
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| 61 | 'MOVE' button; upper most in the left panel of the |
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| 62 | ARB_EDIT4 window), position the mouse cursor |
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| 63 | |
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| 64 | |
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| 65 | |
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