source: tags/arb_5.1/HELP_SOURCE/oldhelp/species.hlp

#Please insert up references in the next lines (line starts with keyword UP)
UP      arb.hlp
UP      glossary.hlp
UP      genes.hlp

#Please insert subtopic references  (line starts with keyword SUB)
SUB     alignment.hlp
SUB     mark.hlp
SUB     selected.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE           What are Species ?

DESCRIPTION     One species is one database entry containing many database entries
                describing the species and one or more sequences (every sequence
                belongs to a different alignment).

                A species is not necessarily consistent with a taxonomic species.


                [Database field name]           [Comment]

                name                            Unique name for a species
                                                max 8 characters long

                acc                             Accession number

                full_name                       Name for a species

                strain

                author

                journal

                ali_16s/data                    a 16s sequence (part of the 16s alignment)
                ali_23s/data                    a 23s sequence
                ali_.../data                    a ... sequence

                The description of the alignment, e.g. type or length, is not stored in every
                species but in an alignment description.