1 | /* -------------------------------------------------------------------------------- |
---|
2 | * File : ARB.xs.default |
---|
3 | * Purpose : Skeleton and predefined functions for ARB perl interface |
---|
4 | * Copyright : Lehrstuhl fuer Mikrobiologie, TU Muenchen |
---|
5 | * -------------------------------------------------------------------------------- */ |
---|
6 | |
---|
7 | #ifdef __cplusplus |
---|
8 | extern "C" { |
---|
9 | #endif |
---|
10 | #include "EXTERN.h" |
---|
11 | #include "perl.h" |
---|
12 | #include "XSUB.h" |
---|
13 | #include "debug.h" |
---|
14 | #include "arbdb.h" |
---|
15 | #include "arbdbt.h" |
---|
16 | #include "adGene.h" |
---|
17 | #include "ARB_ext.c" |
---|
18 | #ifdef __cplusplus |
---|
19 | } |
---|
20 | #endif |
---|
21 | |
---|
22 | |
---|
23 | MODULE = ARB PACKAGE = ARB PREFIX = P2A_ |
---|
24 | |
---|
25 | PROTOTYPES: ENABLE |
---|
26 | |
---|
27 | # -------------------------------------------------------------------------------- |
---|
28 | # the following functions are hand-coded in ARB.xs.default: |
---|
29 | |
---|
30 | GBDATA * |
---|
31 | P2A_search(gbd,str,type_of_entry) |
---|
32 | GBDATA *gbd |
---|
33 | char *str |
---|
34 | char *type_of_entry |
---|
35 | |
---|
36 | CODE: |
---|
37 | if (str[0] == 0) str = 0; |
---|
38 | RETVAL = GB_search(gbd,str,GBP_gb_types(type_of_entry)); |
---|
39 | OUTPUT: |
---|
40 | RETVAL |
---|
41 | |
---|
42 | |
---|
43 | GBDATA* |
---|
44 | P2A_find(gbd,key,gbs) |
---|
45 | GBDATA *gbd |
---|
46 | char *key |
---|
47 | char *gbs |
---|
48 | |
---|
49 | CODE: |
---|
50 | RETVAL = GB_find(gbd,key,GBP_search_mode(gbs)); |
---|
51 | OUTPUT: |
---|
52 | RETVAL |
---|
53 | |
---|
54 | |
---|
55 | GBDATA * |
---|
56 | P2A_create(father,key,type) |
---|
57 | GBDATA *father |
---|
58 | char *key |
---|
59 | char *type |
---|
60 | |
---|
61 | CODE: |
---|
62 | RETVAL = GB_create(father,key,GBP_gb_types(type)); |
---|
63 | OUTPUT: |
---|
64 | RETVAL |
---|
65 | |
---|
66 | char * |
---|
67 | P2A_request_undo_type(gb_main,type) |
---|
68 | GBDATA *gb_main |
---|
69 | char *type |
---|
70 | |
---|
71 | CODE: |
---|
72 | RETVAL = (char *)GB_request_undo_type(gb_main,GBP_undo_types(type)); |
---|
73 | OUTPUT: |
---|
74 | RETVAL |
---|
75 | |
---|
76 | char * |
---|
77 | P2A_undo(gb_main,type) |
---|
78 | GBDATA *gb_main |
---|
79 | char *type |
---|
80 | |
---|
81 | CODE: |
---|
82 | RETVAL = (char *)GB_undo(gb_main,GBP_undo_types(type)); |
---|
83 | OUTPUT: |
---|
84 | RETVAL |
---|
85 | |
---|
86 | char * |
---|
87 | P2A_undo_info(gb_main,type) |
---|
88 | GBDATA *gb_main |
---|
89 | char *type |
---|
90 | |
---|
91 | CODE: |
---|
92 | if (static_pntr) free(static_pntr); |
---|
93 | static_pntr = GB_undo_info(gb_main,GBP_undo_types(type)); |
---|
94 | RETVAL = static_pntr; |
---|
95 | OUTPUT: |
---|
96 | RETVAL |
---|
97 | |
---|
98 | GBDATA * |
---|
99 | P2AT_open_table_field(gb_table,key,type) |
---|
100 | GBDATA *gb_table |
---|
101 | char *key |
---|
102 | char *type |
---|
103 | |
---|
104 | CODE: |
---|
105 | RETVAL = GBT_open_table_field(gb_table,key,GBP_gb_types(type)); |
---|
106 | OUTPUT: |
---|
107 | RETVAL |
---|
108 | |
---|
109 | |
---|
110 | char |
---|
111 | P2AT_complementNucleotide(c,T_or_U) |
---|
112 | char c |
---|
113 | char T_or_U |
---|
114 | |
---|
115 | CODE: |
---|
116 | RETVAL = GBT_complementNucleotide(c,T_or_U); |
---|
117 | OUTPUT: |
---|
118 | RETVAL |
---|
119 | |
---|
120 | long |
---|
121 | P2AT_read_int(gb_container,fieldpath) |
---|
122 | GBDATA *gb_container |
---|
123 | char *fieldpath |
---|
124 | CODE: |
---|
125 | { |
---|
126 | long *lp = GBT_read_int(gb_container,fieldpath); |
---|
127 | RETVAL = lp ? *lp : 0; |
---|
128 | } |
---|
129 | OUTPUT: |
---|
130 | RETVAL |
---|
131 | |
---|
132 | double |
---|
133 | P2AT_read_float(gb_container,fieldpath) |
---|
134 | GBDATA *gb_container |
---|
135 | char *fieldpath |
---|
136 | CODE: |
---|
137 | { |
---|
138 | double *dp = GBT_read_float(gb_container,fieldpath); |
---|
139 | RETVAL = dp ? *dp : 0; |
---|
140 | } |
---|
141 | OUTPUT: |
---|
142 | RETVAL |
---|
143 | |
---|
144 | # -------------------------------------------------------------------------------- |
---|
145 | # functions below are auto-generated by ../TOOLS/arb_proto_2_xsub.cxx |
---|
146 | # using prototypes from the following files: |
---|
147 | # |
---|
148 | # ../ARBDB/ad_prot.h |
---|
149 | # ../ARBDB/ad_t_prot.h |
---|
150 | # ../ARBDB/adGene.h |
---|
151 | # -------------------------------------------------------------------------------- |
---|
152 | |
---|