| 1 | %! *** Created by Liken: Thu Sep 16 09:42:20 1993 |
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| 2 | %!PS-Adobe-2.0 |
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| 3 | %%Title: GDE2.2 |
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| 4 | %%Creator: Microsoft Word |
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| 5 | %%CreationDate: Thursday, September 16, 1993 |
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| 6 | %%Pages: (atend) |
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| 7 | %%BoundingBox: ? ? ? ? |
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| 8 | %%PageBoundingBox: 30 31 582 761 |
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| 9 | %%For: |
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| 10 | %%BeginProcSet: "(AppleDict md)" 68 0 |
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| 11 | %%Title: "Laser Prep -- The Apple PostScript Dictionary (md)" |
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| 12 | %%Creator: Apple Software Engineering |
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| 13 | %%CreationDate: Thursday, March 19, 1987 |
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| 14 | %{appledict version #68 0 |
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| 15 | % (C) CopyRight Apple Computer, Inc. 1984,1985,1986,1987,1988 All Rights Reserved. |
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| 16 | %%EndComments |
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| 17 | /sc {60 45 {abs exch abs 2 copy add 1 gt{1.0 sub dup mul exch 1.0 sub dup mul add 1.0 sub}{dup mul exch dup mul add 1.0 exch sub} |
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| 18 | ifelse}setscreen} bind def statusdict begin product(LaserWriter II)anchorsearch end |
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| 19 | {pop pop/letter [/letter load /exec load /sc load /exec load]cvx def/legal [/legal load /exec load /sc load /exec load]cvx def/a4 [/a4 load /exec load /sc load /exec load]cvx def/b5 [/b5 load /exec load /sc load /exec load]cvx def |
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| 20 | /lettersmall [/lettersmall load /exec load /sc load /exec load]cvx def/a4small [/a4small load /exec load /sc load /exec load]cvx def/note [/note load /exec load /sc load /exec load]cvx def}{pop}ifelse |
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| 21 | systemdict/currentpacking known{currentpacking true setpacking}if |
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| 22 | /LW{save statusdict/product get(LaserWriter)anchorsearch |
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| 23 | exch pop{length 0 eq{1}{2}ifelse}{0}ifelse exch restore}bind def |
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| 24 | /LW+{LW 2 eq}bind def |
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| 25 | /ok{systemdict/statusdict known dup{LW 0 gt and}if}bind def |
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| 26 | /md 250 dict def md begin |
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| 27 | /av 0 def |
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| 28 | /T true def/F false def/mtx matrix def/s75 75 string def/s8 8 string def/s1 ( ) def/pxs 1 def/pys 1 def |
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| 29 | 1 0 mtx defaultmatrix dtransform exch atan/pa exch def/nlw .24 def/ppr [-32 -29.52 762 582.48] def |
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| 30 | /pgs 1 def/por true def/xb 500 array def/so true def/tso true def/fillflag false def/pnm 1 def/fmv true def |
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| 31 | /sfl false def/ma 0 def/invertflag false def/dbinvertflag false def/xflip false def/yflip false def/noflips true def/scaleby96 false def/fNote true def/fBitStretch true def |
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| 32 | /fg (Rvd\001\001\000\000\177) def |
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| 33 | /bdf{bind def}bind def |
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| 34 | /xdf{exch def}bdf |
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| 35 | /xl{neg exch neg translate}bdf |
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| 36 | /fp{pnsh 0 ne pnsv 0 ne and}bdf |
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| 37 | /nop{}bdf/lnop[/nop load]cvx bdf |
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| 38 | /vrb[ |
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| 39 | {fp{fg 6 get 0 ne{gsave stroke grestore}{gsave 1 setlinewidth pnsh pnsv scale stroke grestore}ifelse}if newpath}bind |
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| 40 | /eofill load |
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| 41 | dup |
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| 42 | /newpath load |
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| 43 | 2 index |
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| 44 | dup |
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| 45 | {clip newpath}bind |
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| 46 | {}bind |
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| 47 | dup |
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| 48 | 2 copy |
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| 49 | ]def |
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| 50 | currentscreen/spf xdf/rot xdf/freq xdf |
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| 51 | /doop{vrb exch get exec}bdf |
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| 52 | /psu{/tso xdf /fNote xdf/fBitStretch xdf/scaleby96 xdf/yflip xdf/xflip xdf |
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| 53 | /invertflag xdf/dbinvertflag invertflag statusdict begin version cvr 47.0 ge product (LaserWriter) eq not and end invertflag and {not}if def |
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| 54 | xflip yflip or{/noflips false def}if |
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| 55 | /pgs xdf 2 index .72 mul exch div/pys xdf div .72 mul/pxs xdf ppr astore pop/por xdf sn and/so xdf}bdf |
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| 56 | /tab{statusdict /11x17 known{statusdict begin /11x17 load end}{statusdict /setpage known{statusdict begin 792 1224 1 setpage end}{statusdict /setpageparams known{statusdict begin 792 1224 0 1 setpageparams end}if}ifelse}ifelse}bdf |
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| 57 | /txpose{fNote{smalls}{bigs}ifelse pgs get exec pxs pys scale ppr aload pop por{noflips{pop exch neg exch translate pop 1 -1 scale}if |
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| 58 | xflip yflip and{pop exch neg exch translate 180 rotate 1 -1 scale ppr 3 get ppr 1 get neg sub neg ppr 2 get ppr 0 get neg sub neg translate}if |
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| 59 | xflip yflip not and{pop exch neg exch translate pop 180 rotate ppr 3 get ppr 1 get neg sub neg 0 translate}if yflip xflip not and{ppr 1 get neg ppr 0 get neg translate}if} |
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| 60 | {noflips{translate pop pop 270 rotate 1 -1 scale}if xflip yflip and{translate pop pop 90 rotate 1 -1 scale ppr 3 get ppr 1 get neg sub neg ppr 2 get ppr 0 get neg sub neg translate}if |
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| 61 | xflip yflip not and{translate pop pop 90 rotate ppr 3 get ppr 1 get neg sub neg 0 translate}if yflip xflip not and{translate pop pop 270 rotate ppr 2 get ppr 0 get neg sub neg 0 exch translate}if}ifelse |
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| 62 | scaleby96{ppr aload pop 4 -1 roll add 2 div 3 1 roll add 2 div 2 copy translate .96 dup scale neg exch neg exch translate}if}bdf |
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| 63 | /fr{4 copy ppr aload pop 3 -1 roll add 3 1 roll exch add 6 2 roll 3 -1 roll |
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| 64 | sub 3 1 roll exch sub 3 -1 roll exch div 3 1 roll div exch scale pop pop xl}bdf |
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| 65 | /obl{{0.212557 mul}{pop 0}ifelse}bdf |
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| 66 | /sfd{ps fg 5 -1 roll get mul 100 div 0 ps 5 -1 roll obl ps neg 0 0 6a astore makefont setfont}bdf |
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| 67 | /fnt{findfont sfd}bdf |
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| 68 | /bt{sa 3 1 roll 3 index and put}bdf |
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| 69 | /sa(\000\000\000\000\000\000\000\000\000\000)def |
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| 70 | /fs{0 1 bt 1 2 bt 2 4 bt 3 8 bt 4 16 bt 5 32 bt 6 64 bt 7 128 bt sa exch 8 exch put}bdf |
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| 71 | /mx1 matrix def |
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| 72 | /mx2 matrix def |
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| 73 | /mx3 matrix def |
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| 74 | /bu{currentpoint currentgray currentlinewidth currentlinecap currentlinejoin currentdash exch aload length |
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| 75 | fg 5 sfl{1}{0}ifelse put pnsv pnsh |
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| 76 | 2t aload pop 3a aload pop mx2 aload pop mx1 aload pop mtx currentmatrix aload pop |
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| 77 | mx3 aload pop ps pm restore/ps xdf mx3 astore pop}bdf |
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| 78 | /bn{/pm save def mx3 setmatrix newpath 0 0 moveto ct dup 39 get 0 exch getinterval cvx exec |
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| 79 | mtx astore setmatrix mx1 astore pop mx2 astore pop 3a astore pop |
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| 80 | 2t astore pop/pnsh xdf/pnsv xdf gw |
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| 81 | /sfl fg 5 get 0 ne def array astore exch setdash setlinejoin setlinecap |
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| 82 | setlinewidth setgray moveto}bdf |
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| 83 | /fc{save vmstatus exch sub 50000 lt |
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| 84 | {(%%[|0|]%%)=print flush}if pop restore}bdf |
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| 85 | /tc{32768 div add 3 1 roll 32768 div add 2t astore pop}bdf |
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| 86 | /3a [0 0 0] def |
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| 87 | /2t 2 array def |
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| 88 | /tp{3a astore pop}bdf |
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| 89 | /tt{mx2 currentmatrix pop currentpoint 2 copy 2t aload pop qa 2 copy translate 3a aload pop exch dup 0 eq |
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| 90 | {pop}{1 eq{-1 1}{1 -1}ifelse scale}ifelse rotate pop neg exch neg exch translate moveto}bdf |
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| 91 | /te{mx2 setmatrix}bdf |
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| 92 | /th{3 -1 roll div 3 1 roll exch div 2 copy mx1 scale pop scale/sfl true def}bdf |
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| 93 | /tu{1 1 mx1 itransform scale/sfl false def}bdf |
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| 94 | /ts{1 1 mx1 transform scale/sfl true def}bdf |
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| 95 | /fz{/ps xdf}bdf |
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| 96 | /dv{dup 0 ne{div}{pop}ifelse}bdf |
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| 97 | /pop4{pop pop pop pop}bdf |
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| 98 | /it{sfl{mx1 itransform}if}bdf |
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| 99 | /gm{exch it moveto}bdf/rm{it rmoveto}bdf |
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| 100 | /lm{currentpoint sfl{mx1 transform}if exch pop sub 0 exch it rmoveto}bdf |
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| 101 | /fm{statusdict/manualfeed known}bdf |
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| 102 | /se{statusdict exch/manualfeed exch put}bdf |
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| 103 | /mf{dup/ma exch def 0 gt{fm se/t1 5 st ok ma 1 gt and{/t2 0 st/t3 0 st |
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| 104 | statusdict/manualfeedtimeout 3600 put |
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| 105 | }if}if}bdf |
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| 106 | /jn{/statusdict where exch pop{statusdict exch /jobname exch put}if}bdf |
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| 107 | /pen{pnm mul/pnsh xdf pnm mul/pnsv xdf pnsh setlinewidth}bdf |
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| 108 | /min{2 copy gt{exch}if pop}bdf |
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| 109 | /max{2 copy lt{exch}if pop}bdf |
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| 110 | /dh{fg 6 1 put array astore dup {1 pxs div mul exch}forall astore exch pop exch pop exch setdash}bdf |
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| 111 | /ih[currentdash]def |
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| 112 | /rh{fg 6 0 put ih aload pop setdash}bdf |
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| 113 | /dl{gsave nlw pys div setlinewidth 0 setgray}bdf |
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| 114 | /dlin{exch currentpoint currentlinewidth 2 div dup |
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| 115 | translate newpath moveto lineto currentpoint stroke grestore moveto}bdf |
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| 116 | /lin{fg 6 get 0 ne{exch lineto currentpoint 0 doop moveto} |
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| 117 | {exch currentpoint/pnlv xdf/pnlh xdf gsave newpath/@1 xdf/@2 xdf fp{pnlh @2 lt{pnlv @1 ge |
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| 118 | {pnlh pnlv moveto @2 @1 lineto pnsh 0 rlineto |
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| 119 | 0 pnsv rlineto pnlh pnsh add pnlv pnsv add lineto pnsh neg 0 rlineto} |
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| 120 | {pnlh pnlv moveto pnsh 0 rlineto @2 pnsh add @1 lineto 0 pnsv rlineto |
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| 121 | pnsh neg 0 rlineto pnlh pnlv pnsv add lineto}ifelse}{pnlv @1 gt |
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| 122 | {@2 @1 moveto pnsh 0 rlineto pnlh pnsh add pnlv lineto 0 pnsv rlineto |
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| 123 | pnsh neg 0 rlineto @2 @1 pnsv add lineto}{pnlh pnlv moveto pnsh 0 rlineto |
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| 124 | 0 pnsv rlineto @2 pnsh add @1 pnsv add lineto pnsh neg 0 rlineto |
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| 125 | 0 pnsv neg rlineto}ifelse}ifelse |
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| 126 | closepath fill}if @2 @1 grestore moveto}ifelse}bdf |
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| 127 | /gw{/pnm fg 3 get fg 4 get div def}bdf |
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| 128 | /lw{fg exch 4 exch put fg exch 3 exch put gw pnsv pnsh pen}bdf |
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| 129 | /barc{/@1 xdf/@2 xdf/@3 xdf/@4 xdf/@5 xdf |
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| 130 | /@6 xdf/@7 xdf/@8 xdf gsave |
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| 131 | @5 @7 add 2 div @6 @8 add 2 div translate newpath 0 0 moveto |
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| 132 | @5 @7 sub @6 @8 sub mtx currentmatrix pop scale @1{newpath}if |
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| 133 | 0 0 0.5 @4 @3 arc @4 @3 sub abs 360 ge{closepath}if |
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| 134 | mtx setmatrix @2 doop grestore}bdf |
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| 135 | /ar{dup 0 eq barc}bdf |
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| 136 | /ov{0 exch 360 exch true barc}bdf |
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| 137 | /rc{/@t xdf currentpoint 6 2 roll newpath 4 copy 4 2 roll exch moveto |
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| 138 | 6 -1 roll lineto lineto lineto closepath @t doop moveto}bdf |
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| 139 | /mup{dup pnsh 2 div le exch pnsv 2 div le or}bdf |
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| 140 | /rr{/@1 xdf 2. div/@2 xdf 2. div/@3 xdf |
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| 141 | /@4 xdf/@5 xdf/@6 xdf/@7 xdf |
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| 142 | @7 @5 eq @6 @4 eq @2 mup or or{@7 @6 @5 @4 @1 rc} |
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| 143 | {@4 @6 sub 2. div dup @2 lt{/@2 xdf}{pop}ifelse |
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| 144 | @5 @7 sub 2. div dup @2 lt{/@2 xdf}{pop}ifelse |
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| 145 | @1 0 eq{/@2 @2 pnsh 2 div 2 copy gt{sub def}{0 pop4}ifelse}if |
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| 146 | currentpoint newpath |
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| 147 | @4 @6 add 2. div @7 moveto |
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| 148 | @4 @7 @4 @5 @2 arcto pop4 |
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| 149 | @4 @5 @6 @5 @2 arcto pop4 |
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| 150 | @6 @5 @6 @7 @2 arcto pop4 |
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| 151 | @6 @7 @4 @7 @2 arcto pop4 |
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| 152 | closepath @1 doop moveto}ifelse}bdf |
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| 153 | /pr{gsave newpath/pl{exch moveto/pl{exch lineto}def}def}bdf |
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| 154 | /pl{exch lineto}bdf |
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| 155 | /ep{dup 0 eq{{moveto}{exch lin}{}{(%%[|1|]%%)= flush}pathforall |
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| 156 | pop grestore}{doop grestore}ifelse currentpoint newpath moveto}bdf |
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| 157 | /gr{64. div setgray}bdf |
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| 158 | /pat{s8 copy pop 9.375 pa por not{90 add}if{1 add 4 mul cvi s8 exch get exch 1 add 4 mul cvi 7 sub bitshift 1 and}setscreen gr}bdf |
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| 159 | /sg{freq rot/spf load setscreen gr}bdf |
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| 160 | /dc{transform round .5 sub exch round .5 sub exch itransform}bdf |
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| 161 | /sn{userdict/smooth4 known}bdf |
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| 162 | /x8{3 bitshift}bdf |
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| 163 | /x4{2 bitshift}bdf |
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| 164 | /d4{-2 bitshift}bdf |
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| 165 | /d8{-3 bitshift}bdf |
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| 166 | /rb{15 add -4 bitshift 1 bitshift}bdf |
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| 167 | /db{/@7 save def/@1 xdf/@2 xdf/@3 xdf/@4 xdf/@5 xdf/@6 @5 @3 4 add mul def |
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| 168 | dc translate scale/xdbit 1 1 idtransform abs/ydbit exch def abs def{0 0 1 ydbit add 1 10 rc clip}if |
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| 169 | @1 0 eq @1 4 eq or{1 setgray ydbit 0 1 ydbit add 1 2 rc}if |
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| 170 | @1 3 eq @1 7 eq or{1}{0}ifelse setgray/@9 @1 0 eq @1 1 eq @1 3 eq or or dbinvertflag xor def/@13 @6 def |
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| 171 | @2 fBitStretch or{/@10 @4 x4 def/@11 @3 x4 def/@12 @10 rb def/@13 @12 @11 mul def/@15 1 1 dtransform abs/calcY 1 index def round cvi/@14 exch def |
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| 172 | abs/calcX 1 index def round cvi scaleby96 not{1 add}if def/@16 @15 rb def/@17 @16 @14 mul def}if |
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| 173 | sn @13 60000 lt and @2 fBitStretch or and{mtx currentmatrix dup 1 get exch 2 get 0. eq exch 0. eq and @17 60000 lt and fBitStretch and{@16 3 bitshift @14 @9 [calcX 0 0 calcY 0 0]{@17 string @13 string |
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| 174 | currentfile @6 string readhexstring pop 1 index @4 @3 @5 @12 @2 smooth4 |
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| 175 | @10 @11 @12 dup string 5 index @15 @14 @16 dup string stretch}imagemask}{@12 x8 @11 @9 [@10 0 0 @11 0 0]{@13 string |
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| 176 | currentfile @6 string readhexstring pop 1 index @4 @3 @5 @12 @2 smooth4}imagemask}ifelse}{@5 3 bitshift @3 4 add @9 [@4 0 0 @3 0 2]{currentfile @6 string readhexstring pop}imagemask}ifelse |
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| 177 | @7 restore}bdf |
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| 178 | /multibit{/mbdeep exch def/mbY exch def/mbX exch def |
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| 179 | save mbX mbY mbdeep[mbX 0 0 mbY 0 0]{currentfile picstr readhexstring pop}image |
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| 180 | restore}bdf |
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| 181 | /wd 16 dict def |
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| 182 | /mfont 14 dict def |
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| 183 | /mdf{mfont wcheck not{/mfont 14 dict def}if mfont begin xdf end}bdf |
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| 184 | /cf{{1 index/FID ne{def}{pop pop}ifelse}forall}bdf/rf{/@1 exch def/@2 exch def |
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| 185 | FontDirectory @2 known{cleartomark pop}{findfont dup begin dup length @1 add dict begin |
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| 186 | cf{/Encoding macvec def}{Encoding dup length array copy/Encoding exch def |
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| 187 | counttomark 2 idiv{Encoding 3 1 roll put}repeat}ifelse |
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| 188 | pop |
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| 189 | exec currentdict end end @2 exch definefont pop}ifelse}bdf |
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| 190 | /bmbc{exch begin wd begin |
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| 191 | /cr xdf |
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| 192 | save |
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| 193 | CharTable cr 6 mul 6 getinterval{}forall |
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| 194 | /bitheight xdf/bitwidth xdf |
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| 195 | .96 div/width xdf |
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| 196 | Gkernmax add/XOffset xdf Gdescent add/YOffset xdf/rowbytes xdf |
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| 197 | rowbytes 255 eq{0 0 0 0 0 0 setcachedevice} |
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| 198 | {Gnormsize dup scale |
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| 199 | width 0 XOffset YOffset bitwidth XOffset add bitheight YOffset add |
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| 200 | setcachedevice |
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| 201 | rowbytes 0 ne{ |
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| 202 | XOffset YOffset translate newpath 0 0 moveto |
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| 203 | bitwidth bitheight scale |
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| 204 | sn{ |
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| 205 | /xSmt bitwidth x4 def |
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| 206 | /ySmt bitheight x4 def |
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| 207 | /rSmt xSmt rb def |
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| 208 | rSmt x8 ySmt true |
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| 209 | [xSmt 0 0 ySmt neg 0 ySmt] |
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| 210 | {rSmt ySmt mul string CharData cr get |
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| 211 | 1 index bitwidth bitheight rowbytes rSmt tso smooth4} |
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| 212 | }{rowbytes 3 bitshift bitheight 4 add true |
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| 213 | [bitwidth 0 0 bitheight neg 0 bitheight 2 add] |
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| 214 | {CharData cr get} |
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| 215 | }ifelse |
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| 216 | imagemask |
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| 217 | }if |
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| 218 | }ifelse |
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| 219 | restore |
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| 220 | end end |
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| 221 | }bdf |
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| 222 | /bb{.96 exch div/Gnormsize mdf 2 index |
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| 223 | /Gkernmax mdf 1 index/Gdescent mdf |
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| 224 | 3 index div 4 1 roll |
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| 225 | 2 index div 1. 5 2 roll |
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| 226 | exch div 4 1 roll |
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| 227 | 4 array astore/FontBBox mdf |
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| 228 | }bdf |
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| 229 | /cdf{mfont/CharData get 3 1 roll put}bdf |
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| 230 | /bf{ |
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| 231 | mfont begin |
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| 232 | /FontType 3 def |
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| 233 | /FontMatrix [1 0 0 1 0 0] def |
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| 234 | /Encoding macvec def |
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| 235 | /BuildChar/bmbc load def |
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| 236 | end |
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| 237 | mfont definefont pop |
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| 238 | }bdf |
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| 239 | /wi LW 1 eq{{gsave 0 0 0 0 0 0 0 0 moveto lineto lineto lineto closepath clip stringwidth grestore}bind}{/stringwidth load}ifelse def |
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| 240 | /aps{0 get 124 eq}bdf |
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| 241 | /xc{s75 cvs dup}bdf |
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| 242 | /xp{put cvn}bdf |
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| 243 | /scs{xc 3 67 put dup 0 95 xp}bdf |
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| 244 | /sos{xc 3 79 xp}bdf |
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| 245 | /sbs{xc 1 66 xp}bdf |
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| 246 | /sis{xc 2 73 xp}bdf |
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| 247 | /sob{xc 2 79 xp}bdf |
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| 248 | /sss{xc 4 83 xp}bdf |
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| 249 | /dd{exch 1 index add 3 1 roll add exch}bdf |
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| 250 | /smc{moveto dup show}bdf |
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| 251 | /kwn{FontDirectory 1 index known{findfont exch pop}}bdf |
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| 252 | /gl{1 currentgray sub setgray}bdf |
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| 253 | /mm{/mfont 10 dict def mfont begin |
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| 254 | /FontMatrix [1 0 0 1 0 0] def |
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| 255 | /FontType 3 def |
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| 256 | /Encoding macvec def |
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| 257 | /df 4 index findfont def |
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| 258 | /FontBBox [0 0 1 1] def |
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| 259 | /xda xdf/mbc xdf |
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| 260 | /BuildChar{wd begin/cr xdf/fd xdf/cs s1 dup 0 cr put def fd/mbc get exec end}def |
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| 261 | exec end mfont definefont}bdf |
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| 262 | /ac{dup scs kwn{exch findfont dup length 1 add dict begin{1 index/FID ne 2 index/UniqueID ne and{def}{pop pop}ifelse}forall |
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| 263 | fmv{/Encoding macvec def}if/StrokeWidth nlw 1000 mul pys div ps div dup 12 lt{pop 12}if def |
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| 264 | /PaintType 2 def currentdict end definefont}ifelse}bdf |
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| 265 | /mb{dup sbs kwn{exch{pop}{bbc}{}mm}ifelse sfd}bdf |
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| 266 | /mo{dup sos kwn{exch{pop}{boc}{}mm}ifelse sfd}bdf |
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| 267 | /ms{dup sss kwn{exch{pop}{bsc}{}mm}ifelse sfd}bdf |
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| 268 | /ou{dup sos kwn{exch dup ac pop{scs findfont /df2 xdf}{aoc}{}mm}ifelse sfd}bdf |
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| 269 | /su{dup sss kwn{exch dup ac pop{scs findfont /df2 xdf}{asc}{}mm}ifelse sfd}bdf |
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| 270 | /ao{/fmv true def ou}bdf/as{/fmv true def su}bdf |
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| 271 | /vo{/fmv false def ou}bdf/vs{/fmv false def su}bdf |
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| 272 | /bbc{/da .03 def fd/df get setfont |
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| 273 | gsave cs wi 1 index 0 ne{exch da add exch}if grestore setcharwidth |
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| 274 | cs 0 0 smc da 0 smc da da smc 0 da moveto show}bdf |
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| 275 | /boc{/da 1 ps div def fd/df get setfont |
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| 276 | gsave cs wi 1 index 0 ne{exch da add exch}if grestore setcharwidth |
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| 277 | cs 0 0 smc da 0 smc da da smc 0 da smc gl da 2. div dup moveto show}bdf |
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| 278 | /bsc{/da 1 ps div def |
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| 279 | /ds .05 def/da2 da 2. div def fd/df get setfont |
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| 280 | gsave cs wi 1 index 0 ne{exch ds add da2 add exch}if grestore setcharwidth |
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| 281 | cs ds da2 add .01 add 0 smc 0 ds da2 sub translate 0 0 smc |
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| 282 | da 0 smc da da smc 0 da smc gl da 2. div dup moveto show}bdf |
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| 283 | /aoc{fd/df get setfont |
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| 284 | gsave cs wi grestore setcharwidth |
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| 285 | gl cs 0 0 smc fd/df2 get setfont gl 0 0 moveto show}bdf |
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| 286 | /asc{/da .05 def fd/df get setfont |
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| 287 | gsave cs wi 1 index 0 ne{exch da add exch}if grestore setcharwidth |
|---|
| 288 | cs da .01 add 0 smc 0 da translate gl 0 0 smc gl fd/df2 get setfont 0 0 moveto show}bdf |
|---|
| 289 | /st{1000 mul usertime add dup 2147483647 gt{2147483647 sub}if def}bdf |
|---|
| 290 | /the{usertime sub dup 0 lt exch -2147483648 gt and}bdf |
|---|
| 291 | /6a 6 array def |
|---|
| 292 | /2a 2 array def |
|---|
| 293 | /3q 3 array def |
|---|
| 294 | /qs{3 -1 roll sub exch 3 -1 roll sub exch}bdf |
|---|
| 295 | /qa{3 -1 roll add exch 3 -1 roll add exch}bdf |
|---|
| 296 | /qm{3 -1 roll 1 index mul 3 1 roll mul}bdf |
|---|
| 297 | /qn{6a exch get mul}bdf |
|---|
| 298 | /qA .166667 def/qB .833333 def/qC .5 def |
|---|
| 299 | /qx{6a astore pop |
|---|
| 300 | qA 0 qn qB 2 qn add qA 1 qn qB 3 qn add |
|---|
| 301 | qB 2 qn qA 4 qn add qB 3 qn qA 5 qn add |
|---|
| 302 | qC 2 qn qC 4 qn add qC 3 qn qC 5 qn add}bdf |
|---|
| 303 | /qp{6 copy 12 -2 roll pop pop}bdf |
|---|
| 304 | /qc{exch qp qx curveto}bdf |
|---|
| 305 | /qi{{exch 4 copy 2a astore aload pop qa .5 qm newpath moveto}{exch 2 copy 6 -2 roll 2 qm qs 4 2 roll}ifelse}bdf |
|---|
| 306 | /qq{{qc 2a aload pop qx curveto}{exch 4 copy qs qa qx curveto}ifelse}bdf |
|---|
| 307 | /pt{currentpoint newpath moveto}bdf |
|---|
| 308 | /qf{/fillflag true def}bdf |
|---|
| 309 | /ec{1 and 0 ne{0 doop}if grestore currentpoint newpath moveto/fillflag false def}bdf |
|---|
| 310 | /eu{currentpoint fp{0 ep}{grestore newpath}ifelse moveto/fillflag false def}bdf |
|---|
| 311 | /bp{currentpoint newpath 2 copy moveto}bdf |
|---|
| 312 | /ef{gsave fillflag{gsave eofill grestore}if}bdf |
|---|
| 313 | /sm{0 exch{@1 eq{1 add}if}forall}bdf |
|---|
| 314 | /lshow{4 1 roll exch/@1 exch def{1 index wi pop sub 1 index sm dv 0 @1 4 -1 roll widthshow}{1 index wi pop sub |
|---|
| 315 | 1 index dup sm 10 mul exch length 1 sub add dv dup 10. mul 0 @1 4 -1 roll 0 6 -1 roll awidthshow}ifelse}bdf |
|---|
| 316 | /setTxMode{sa 9 2 index put 3 eq{1}{0}ifelse setgray}bdf |
|---|
| 317 | /SwToSym{{}mark false/Symbol/|______Symbol 0 rf 0 sa 6 get 0 ne{pop 1}{sa 7 get 0 eq{pop 2}if}ifelse |
|---|
| 318 | sa 1 get 0 ne/|______Symbol |
|---|
| 319 | sa 4 get 0 ne{vs}{sa 3 get 0 ne{vo}{fnt}ifelse}ifelse}bdf |
|---|
| 320 | /mc{0 3 1 roll transform neg exch pop}bdf |
|---|
| 321 | /ul{dup 0 ne sa 2 get 0 ne and{gsave 0 0 |
|---|
| 322 | /UnderlinePosition kif{mc}{ps -10 div}ifelse/UnderlineThickness kif{mc}{ps 15 div}ifelse |
|---|
| 323 | abs setlinewidth neg rmoveto |
|---|
| 324 | sa 4 get 0 ne{gsave currentlinewidth 2. div dup rmoveto currentpoint newpath moveto |
|---|
| 325 | 2 copy rlineto stroke grestore}if |
|---|
| 326 | sa 3 get sa 4 get or 0 ne{gsave gl 2 copy rlineto stroke grestore rlineto strokepath nlw pys div setlinewidth}{rlineto}ifelse |
|---|
| 327 | stroke grestore}{pop}ifelse}bdf |
|---|
| 328 | /sgt{2 copy known{get true}{pop pop false}ifelse}bdf |
|---|
| 329 | /kif{currentfont dup/FontMatrix get exch/FontInfo sgt{true}{currentfont/df sgt |
|---|
| 330 | {dup/FontInfo sgt{3 1 roll/FontMatrix get mtx concatmatrix exch true}{pop pop pop false} |
|---|
| 331 | ifelse}{pop pop false}ifelse}ifelse{3 -1 roll sgt{exch true}{pop false}ifelse}{false}ifelse}bdf |
|---|
| 332 | /blank/Times-Roman findfont/CharStrings get/space get def |
|---|
| 333 | /macvec 256 array def |
|---|
| 334 | /NUL/SOH/STX/ETX/EOT/ENQ/ACK/BEL/BS/HT/LF/VT/FF/CR/SO/SI |
|---|
| 335 | /DLE/DC1/DC2/DC3/DC4/NAK/SYN/ETB/CAN/EM/SUB/ESC/FS/GS/RS/US |
|---|
| 336 | macvec 0 32 getinterval astore pop |
|---|
| 337 | macvec 32/Times-Roman findfont/Encoding get |
|---|
| 338 | 32 96 getinterval putinterval macvec dup 39/quotesingle put 96/grave put |
|---|
| 339 | /Adieresis/Aring/Ccedilla/Eacute/Ntilde/Odieresis/Udieresis/aacute |
|---|
| 340 | /agrave/acircumflex/adieresis/atilde/aring/ccedilla/eacute/egrave |
|---|
| 341 | /ecircumflex/edieresis/iacute/igrave/icircumflex/idieresis/ntilde/oacute |
|---|
| 342 | /ograve/ocircumflex/odieresis/otilde/uacute/ugrave/ucircumflex/udieresis |
|---|
| 343 | /dagger/degree/cent/sterling/section/bullet/paragraph/germandbls |
|---|
| 344 | /registered/copyright/trademark/acute/dieresis/notequal/AE/Oslash |
|---|
| 345 | /infinity/plusminus/lessequal/greaterequal/yen/mu/partialdiff/summation |
|---|
| 346 | /product/pi/integral/ordfeminine/ordmasculine/Omega/ae/oslash |
|---|
| 347 | /questiondown/exclamdown/logicalnot/radical/florin/approxequal/Delta/guillemotleft |
|---|
| 348 | /guillemotright/ellipsis/blank/Agrave/Atilde/Otilde/OE/oe |
|---|
| 349 | /endash/emdash/quotedblleft/quotedblright/quoteleft/quoteright/divide/lozenge |
|---|
| 350 | /ydieresis/Ydieresis/fraction/currency/guilsinglleft/guilsinglright/fi/fl |
|---|
| 351 | /daggerdbl/periodcentered/quotesinglbase/quotedblbase/perthousand/Acircumflex/Ecircumflex/Aacute |
|---|
| 352 | /Edieresis/Egrave/Iacute/Icircumflex/Idieresis/Igrave/Oacute/Ocircumflex |
|---|
| 353 | /apple/Ograve/Uacute/Ucircumflex/Ugrave/dotlessi/circumflex/tilde |
|---|
| 354 | /macron/breve/dotaccent/ring/cedilla/hungarumlaut/ogonek/caron |
|---|
| 355 | macvec 128 128 getinterval astore pop |
|---|
| 356 | {}mark true/Courier/|______Courier 0 rf |
|---|
| 357 | {/Metrics 21 dict begin/zero 600 def/one 600 def/two 600 def/three 600 def/four 600 def/five 600 def/six 600 def/seven 600 def/eight 600 def |
|---|
| 358 | /nine 600 def/comma 600 def/period 600 def/dollar 600 def/numbersign 600 def/percent 600 def/plus 600 def/hyphen 600 def/E 600 def/parenleft 600 def/parenright 600 def/space 600 def |
|---|
| 359 | currentdict end def currentdict/UniqueID known{/UniqueID 16#800000 def}if/FontBBox FontBBox 4 array astore def}mark true/Helvetica/|______Seattle 1 rf |
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| 360 | /oldsettransfer/settransfer load def |
|---|
| 361 | /concatprocs{/proc2 exch cvlit def/proc1 exch cvlit def/newproc proc1 length proc2 length add array def |
|---|
| 362 | newproc 0 proc1 putinterval newproc proc1 length proc2 putinterval newproc cvx}def |
|---|
| 363 | /settransfer{currenttransfer concatprocs oldsettransfer}def |
|---|
| 364 | /PaintBlack{{1 exch sub}settransfer gsave newpath clippath 1 setgray fill grestore}def |
|---|
| 365 | /od{(Rvd\001\001\000\000\177) fg copy pop txpose |
|---|
| 366 | 1 0 mtx defaultmatrix dtransform exch atan/pa exch def |
|---|
| 367 | newpath clippath mark |
|---|
| 368 | {transform{itransform moveto}}{transform{itransform lineto}} |
|---|
| 369 | {6 -2 roll transform 6 -2 roll transform 6 -2 roll transform |
|---|
| 370 | {itransform 6 2 roll itransform 6 2 roll itransform 6 2 roll curveto}} |
|---|
| 371 | {{closepath}}pathforall newpath counttomark array astore/gc xdf pop ct 39 0 put |
|---|
| 372 | 10 fz 0 fs 2 F/|______Courier fnt invertflag{PaintBlack}if}bdf |
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| 373 | /cd{}bdf |
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| 374 | /op{/sfl false def/pm save def}bdf |
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| 375 | /cp{not{userdict/#copies 0 put}if ma 0 gt{{t1 the{exit}if}loop}if{copypage}{showpage}ifelse pm restore}bdf |
|---|
| 376 | /px{0 3 1 roll tp tt}bdf |
|---|
| 377 | /psb{/us save def}bdf |
|---|
| 378 | /pse{us restore}bdf |
|---|
| 379 | /ct 40 string def |
|---|
| 380 | /nc{currentpoint initclip newpath gc{dup type dup/arraytype eq exch/packedarraytype eq or{exec}if} |
|---|
| 381 | forall clip newpath moveto}def |
|---|
| 382 | /kp{ct 0 2 index length 2 index 39 2 index put getinterval copy cvx exec mx3 currentmatrix pop}bdf |
|---|
| 383 | /av 68 def |
|---|
| 384 | end |
|---|
| 385 | LW 1 eq userdict/a4small known not and{/a4small |
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| 386 | [[300 72 div 0 0 -300 72 div -120 3381] |
|---|
| 387 | 280 3255 |
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| 388 | {statusdict/jobstate (printing) put 0 setblink |
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| 389 | margins |
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| 390 | exch 196 add exch 304 add 8 div round cvi frametoroket |
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| 391 | statusdict/jobstate (busy) put |
|---|
| 392 | 1 setblink} |
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| 393 | /framedevice load |
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| 394 | 60 45{dup mul exch dup mul add 1.0 exch sub}/setscreen load |
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| 395 | {}/settransfer load/initgraphics load/erasepage load]cvx |
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| 398 | lnop lnop lnop /tab load]def |
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| 399 | /smalls[lnop userdict/lettersmall known{/lettersmall load}{userdict/note known{/note load}{lnop}ifelse}ifelse |
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| 400 | userdict/legal known{/legal load}{lnop}ifelse userdict/a4small known{/a4small load}{lnop}ifelse |
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| 401 | userdict/b5 known{/b5 load}{userdict/note known{/note load}{lnop}ifelse}ifelse lnop lnop lnop /tab load]def end |
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| 520 | 0000000000000000000000000000000000000000000000000000000000000000 |
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| 521 | 0000000000000000000000000000000000000000000000000000000000000000 |
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| 523 | %%EndProcSet |
|---|
| 524 | %%EndComments |
|---|
| 525 | %%EndProlog |
|---|
| 526 | %%BeginDocumentSetup |
|---|
| 527 | md begin |
|---|
| 528 | |
|---|
| 529 | T T -31 -30 761 582 100 72 72 1 F F F F T T T psu |
|---|
| 530 | (; document: GDE2.2)jn |
|---|
| 531 | 0 mf |
|---|
| 532 | od |
|---|
| 533 | %%EndDocumentSetup |
|---|
| 534 | %%Page: ? 1 |
|---|
| 535 | op |
|---|
| 536 | 31 30 xl |
|---|
| 537 | 1 1 pen |
|---|
| 538 | 753 90 gm |
|---|
| 539 | (nc 31 30 761 582 6 rc)kp |
|---|
| 540 | 1 setTxMode |
|---|
| 541 | 0 fs |
|---|
| 542 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 543 | 7 fz |
|---|
| 544 | 2 F /|______Times-Roman fnt |
|---|
| 545 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 546 | 753 303 gm |
|---|
| 547 | 12 fz |
|---|
| 548 | 2 F /|______Times-Roman fnt |
|---|
| 549 | (1)show |
|---|
| 550 | 86 90 gm |
|---|
| 551 | 18 fz |
|---|
| 552 | 2 F /|______Times-Roman fnt |
|---|
| 553 | 0.25192 0. 32 0.02519 0.(Genetic Data Environment)awidthshow |
|---|
| 554 | 86 306 gm |
|---|
| 555 | 1.00982 0. 32 0.10098 0.(version 2.2)awidthshow |
|---|
| 556 | 113 90 gm |
|---|
| 557 | 14 fz |
|---|
| 558 | 2 F /|______Times-Roman fnt |
|---|
| 559 | 0.19348 0. 32 0.01934 0.(Table of Contents)awidthshow |
|---|
| 560 | 125 90 gm |
|---|
| 561 | 12 fz |
|---|
| 562 | 2 F /|______Times-Roman fnt |
|---|
| 563 | 0.87683 0.(Introduction.........................................................................................)ashow |
|---|
| 564 | 125 148 gm |
|---|
| 565 | ( )show |
|---|
| 566 | 125 504 gm |
|---|
| 567 | (2)show |
|---|
| 568 | 137 90 gm |
|---|
| 569 | -0.00367 0.(What's New for this Release)ashow |
|---|
| 570 | 137 228 gm |
|---|
| 571 | 1.01469 0.(.....................................................................)ashow |
|---|
| 572 | 137 226 gm |
|---|
| 573 | ( )show |
|---|
| 574 | 137 504 gm |
|---|
| 575 | (2)show |
|---|
| 576 | 149 90 gm |
|---|
| 577 | -0.10981 0.(System Requirements)ashow |
|---|
| 578 | 149 196 gm |
|---|
| 579 | 1.01313 0.(.............................................................................)ashow |
|---|
| 580 | 149 193 gm |
|---|
| 581 | ( )show |
|---|
| 582 | 149 504 gm |
|---|
| 583 | (2)show |
|---|
| 584 | 161 90 gm |
|---|
| 585 | -0.09104 0.(Note to Motif users)ashow |
|---|
| 586 | 161 184 gm |
|---|
| 587 | 1.01264 0.(................................................................................)ashow |
|---|
| 588 | 161 182 gm |
|---|
| 589 | ( )show |
|---|
| 590 | 161 504 gm |
|---|
| 591 | (2)show |
|---|
| 592 | 173 90 gm |
|---|
| 593 | -0.15522 0.(Installing the GDE)ashow |
|---|
| 594 | 173 180 gm |
|---|
| 595 | 1.01248 0.(.................................................................................)ashow |
|---|
| 596 | 173 178 gm |
|---|
| 597 | ( )show |
|---|
| 598 | 173 504 gm |
|---|
| 599 | (3)show |
|---|
| 600 | 185 90 gm |
|---|
| 601 | -0.08174 0.(Using the GDE)ashow |
|---|
| 602 | 185 164 gm |
|---|
| 603 | 1.01188 0.(.....................................................................................)ashow |
|---|
| 604 | 185 163 gm |
|---|
| 605 | ( )show |
|---|
| 606 | 185 504 gm |
|---|
| 607 | (3)show |
|---|
| 608 | 197 90 gm |
|---|
| 609 | -0.21920 0.(Data Types)ashow |
|---|
| 610 | 197 144 gm |
|---|
| 611 | 1.01121 0.(..........................................................................................)ashow |
|---|
| 612 | 197 143 gm |
|---|
| 613 | ( )show |
|---|
| 614 | 197 504 gm |
|---|
| 615 | (7)show |
|---|
| 616 | 209 90 gm |
|---|
| 617 | -0.10195 0.(Menu Functions)ashow |
|---|
| 618 | 221 126 gm |
|---|
| 619 | -0.16563 0.(File menu)ashow |
|---|
| 620 | 221 176 gm |
|---|
| 621 | 1.01232 0.(..................................................................................)ashow |
|---|
| 622 | 221 173 gm |
|---|
| 623 | ( )show |
|---|
| 624 | 221 504 gm |
|---|
| 625 | (7)show |
|---|
| 626 | 233 126 gm |
|---|
| 627 | -0.20724 0.(Edit menu)ashow |
|---|
| 628 | 233 176 gm |
|---|
| 629 | 1.01232 0.(..................................................................................)ashow |
|---|
| 630 | 233 174 gm |
|---|
| 631 | ( )show |
|---|
| 632 | 233 504 gm |
|---|
| 633 | (9)show |
|---|
| 634 | 245 126 gm |
|---|
| 635 | 7.54577 0. 32 0.75457 0.(DNA/RNA menu..........................................................................)awidthshow |
|---|
| 636 | 245 208 gm |
|---|
| 637 | ( )show |
|---|
| 638 | 245 504 gm |
|---|
| 639 | (9)show |
|---|
| 640 | 257 90 gm |
|---|
| 641 | -0.11619 0.(External Functions)ashow |
|---|
| 642 | 257 180 gm |
|---|
| 643 | 1.01248 0.(.................................................................................)ashow |
|---|
| 644 | 257 179 gm |
|---|
| 645 | ( )show |
|---|
| 646 | 257 504 gm |
|---|
| 647 | (10)show |
|---|
| 648 | 269 90 gm |
|---|
| 649 | -0.06219 0.(Bug reports/extensions)ashow |
|---|
| 650 | 269 200 gm |
|---|
| 651 | 1.01332 0.(............................................................................)ashow |
|---|
| 652 | 269 199 gm |
|---|
| 653 | ( )show |
|---|
| 654 | 269 504 gm |
|---|
| 655 | (12)show |
|---|
| 656 | 281 90 gm |
|---|
| 657 | -0.14102 0.(Acknowledgments)ashow |
|---|
| 658 | 281 180 gm |
|---|
| 659 | 1.01248 0.(.................................................................................)ashow |
|---|
| 660 | 281 178 gm |
|---|
| 661 | ( )show |
|---|
| 662 | 281 504 gm |
|---|
| 663 | (12)show |
|---|
| 664 | 293 90 gm |
|---|
| 665 | -0.08592 0.(Appendix A, File Formats)ashow |
|---|
| 666 | 293 216 gm |
|---|
| 667 | 1.01406 0.(........................................................................)ashow |
|---|
| 668 | 293 214 gm |
|---|
| 669 | ( )show |
|---|
| 670 | 293 504 gm |
|---|
| 671 | (13)show |
|---|
| 672 | 305 90 gm |
|---|
| 673 | -0.06129 0.(Appendix B, Adding Functions)ashow |
|---|
| 674 | 305 240 gm |
|---|
| 675 | 1.01536 0.(..................................................................)ashow |
|---|
| 676 | 305 239 gm |
|---|
| 677 | ( )show |
|---|
| 678 | 305 504 gm |
|---|
| 679 | (16)show |
|---|
| 680 | 317 90 gm |
|---|
| 681 | 5.07019 0. 32 0.50701 0.(Appendix C, External functions..................................................................)awidthshow |
|---|
| 682 | 317 240 gm |
|---|
| 683 | ( )show |
|---|
| 684 | 317 504 gm |
|---|
| 685 | (19)show |
|---|
| 686 | F T cp |
|---|
| 687 | %%Page: ? 2 |
|---|
| 688 | op |
|---|
| 689 | 31 30 xl |
|---|
| 690 | 1 1 pen |
|---|
| 691 | 753 90 gm |
|---|
| 692 | (nc 31 30 761 582 6 rc)kp |
|---|
| 693 | 1 setTxMode |
|---|
| 694 | 0 fs |
|---|
| 695 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 696 | 7 fz |
|---|
| 697 | 2 F /|______Times-Roman fnt |
|---|
| 698 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 699 | 753 303 gm |
|---|
| 700 | 12 fz |
|---|
| 701 | 2 F /|______Times-Roman fnt |
|---|
| 702 | (2)show |
|---|
| 703 | 99 90 gm |
|---|
| 704 | 14 fz |
|---|
| 705 | 2 F /|______Times-Roman fnt |
|---|
| 706 | 0.16366 0.(Introduction)ashow |
|---|
| 707 | 126 90 gm |
|---|
| 708 | 10 fz |
|---|
| 709 | 2 F /|______Times-Roman fnt |
|---|
| 710 | -0.00480 0.(The Genetic Data Environment is part of a growing set of programs for manipulating and analyzing)ashow |
|---|
| 711 | 137 90 gm |
|---|
| 712 | -0.02925 0.("genetic" data. It differs in design from other analysis programs in that it is intended to be an expandable and)ashow |
|---|
| 713 | 148 90 gm |
|---|
| 714 | 0.30548 0. 32 0.03054 0.(customizable system, while still being easy to use.)awidthshow |
|---|
| 715 | 170 90 gm |
|---|
| 716 | -0.03929 0.(There are a tremendous number of publicly available programs for sequence analysis. Many of these)ashow |
|---|
| 717 | 181 90 gm |
|---|
| 718 | -0.02575 0.(programs have found their way into commercial packages which incorporate them into integrated, easy to use)ashow |
|---|
| 719 | 192 90 gm |
|---|
| 720 | 0.00381 0. 32 0.00038 0.(systems. The goal of the GDE is to minimize the amount of effort required to integrate sequence analysis)awidthshow |
|---|
| 721 | 203 90 gm |
|---|
| 722 | 0.02471 0. 32 0.00247 0.(functions into a common environment. The GDE takes care of the user interface issues, and allows the)awidthshow |
|---|
| 723 | 214 90 gm |
|---|
| 724 | 0.08422 0. 32 0.00842 0.(programmer to concentrate on the analysis itself. Existing programs can be tied into the GDE in a matter of)awidthshow |
|---|
| 725 | 225 90 gm |
|---|
| 726 | 0.05676 0. 32 0.00567 0.(hours \(or minutes\) as apposed to days or weeks. Programs may be written in any language, and still)awidthshow |
|---|
| 727 | 236 90 gm |
|---|
| 728 | -0.01551 0.(seamlessly be incorporated into the GDE.)ashow |
|---|
| 729 | 258 90 gm |
|---|
| 730 | 0.15960 0. 32 0.01596 0.(These programs are, and will continue to be, available at no charge. It is the hope that this system will)awidthshow |
|---|
| 731 | 269 90 gm |
|---|
| 732 | -0.00163 0.(grow in functionality as more and more people see the benefits of a modular analysis environment. Users)ashow |
|---|
| 733 | 280 90 gm |
|---|
| 734 | -0.04074 0.(are encouraged to make modifications to the system, and forward all changes and additions to Steven Smith)ashow |
|---|
| 735 | 291 90 gm |
|---|
| 736 | 0.55236 0. 32 0.05523 0.(at smith@bioimage.millipore.com.)awidthshow |
|---|
| 737 | 316 90 gm |
|---|
| 738 | 14 fz |
|---|
| 739 | 2 F /|______Times-Roman fnt |
|---|
| 740 | 0.33660 0. 32 0.03366 0.(What's New for this Release)awidthshow |
|---|
| 741 | 339 90 gm |
|---|
| 742 | 10 fz |
|---|
| 743 | 2 F /|______Times-Roman fnt |
|---|
| 744 | -0.01681 0.(GDE 2.2 represents a maintainence release. Several small bugs have been fixed, as well as new editing)ashow |
|---|
| 745 | 350 90 gm |
|---|
| 746 | -0.03550 0.(features and user interface elements. Also, I have tried to update all of the contributed external programs to)ashow |
|---|
| 747 | 361 90 gm |
|---|
| 748 | -0.07492 0.(their latest release. Updated programs include:)ashow |
|---|
| 749 | 383 90 gm |
|---|
| 750 | 0.17684 0.(Phylip)ashow |
|---|
| 751 | 394 90 gm |
|---|
| 752 | -0.12425 0.(Treetool)ashow |
|---|
| 753 | 405 90 gm |
|---|
| 754 | (LoopTool)show |
|---|
| 755 | 416 90 gm |
|---|
| 756 | -0.47906 0.(Readseq)ashow |
|---|
| 757 | 427 90 gm |
|---|
| 758 | -0.13854 0.(Blast)ashow |
|---|
| 759 | 438 90 gm |
|---|
| 760 | -0.02584 0.(Fasta)ashow |
|---|
| 761 | 460 90 gm |
|---|
| 762 | -0.03245 0.(Improved versions of printing, and translate are included as well. As for new editing features, a useful)ashow |
|---|
| 763 | 471 90 gm |
|---|
| 764 | -0.03184 0.("yanking" feature has been added by Scott Ferguson from Exxon Research, and the capability to export the)ashow |
|---|
| 765 | 482 90 gm |
|---|
| 766 | -0.03855 0.(colormap for a seqeunce \(see appendicies A/C\). Among the bugs fixed in this release are:)ashow |
|---|
| 767 | 504 90 gm |
|---|
| 768 | 0.04196 0. 32 0.00419 0.(Selection mask problems when exporting to Genbank \(fixed in 2.1\))awidthshow |
|---|
| 769 | 515 90 gm |
|---|
| 770 | -0.01756 0.(Memory leaks \(fixed in 2.1\))ashow |
|---|
| 771 | 526 90 gm |
|---|
| 772 | -0.11788 0.(Correct handling of circular sequences)ashow |
|---|
| 773 | 537 90 gm |
|---|
| 774 | -0.05303 0.(More liberal interpretation of Genbank formatted files. \(not column dependent\))ashow |
|---|
| 775 | 573 90 gm |
|---|
| 776 | 14 fz |
|---|
| 777 | 2 F /|______Times-Roman fnt |
|---|
| 778 | -0.02626 0.(System Requirements)ashow |
|---|
| 779 | 596 90 gm |
|---|
| 780 | 10 fz |
|---|
| 781 | 2 F /|______Times-Roman fnt |
|---|
| 782 | 0.16036 0. 32 0.01603 0.(GDE 2.2 currently runs on the Sun family of workstations. This includes the Sun3 and Sun4 \(Sparcstation\))awidthshow |
|---|
| 783 | 607 90 gm |
|---|
| 784 | 0.19104 0. 32 0.01910 0.(systems. It was written in XView, and runs on Suns using OpenWindows 3.0 or MIT's X Windows. It)awidthshow |
|---|
| 785 | 618 90 gm |
|---|
| 786 | 0.00488 0. 32 0.00048 0.(runs in both monochrome, and color, and can be run remotely on any system capable of running X Windows)awidthshow |
|---|
| 787 | 629 90 gm |
|---|
| 788 | -0.01159 0.(Release 4. You should have at least 15 meg of free disk space available. The binay release for)ashow |
|---|
| 789 | 640 90 gm |
|---|
| 790 | (SparcStations was compiled under SunOS 4.1.2 and Openwindows 3.0.)show |
|---|
| 791 | 662 90 gm |
|---|
| 792 | 0.14724 0. 32 0.01472 0.(We are also supporting a DECStation version of GDE. This is running under XView 3.0/X11R5. We)awidthshow |
|---|
| 793 | 673 90 gm |
|---|
| 794 | -0.00736 0.(encourage interested people to port the programs to their favorite Unix platform. There are informal ports to)ashow |
|---|
| 795 | 684 90 gm |
|---|
| 796 | 0.22964 0. 32 0.02296 0.(the SGI line of unix machines.)awidthshow |
|---|
| 797 | 709 90 gm |
|---|
| 798 | 14 fz |
|---|
| 799 | 2 F /|______Times-Roman fnt |
|---|
| 800 | 0.36575 0. 32 0.03657 0.(Note to Motif users)awidthshow |
|---|
| 801 | F T cp |
|---|
| 802 | %%Page: ? 3 |
|---|
| 803 | op |
|---|
| 804 | 31 30 xl |
|---|
| 805 | 1 1 pen |
|---|
| 806 | 753 90 gm |
|---|
| 807 | (nc 31 30 761 582 6 rc)kp |
|---|
| 808 | 1 setTxMode |
|---|
| 809 | 0 fs |
|---|
| 810 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 811 | 7 fz |
|---|
| 812 | 2 F /|______Times-Roman fnt |
|---|
| 813 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 814 | 753 303 gm |
|---|
| 815 | 12 fz |
|---|
| 816 | 2 F /|______Times-Roman fnt |
|---|
| 817 | (3)show |
|---|
| 818 | 92 90 gm |
|---|
| 819 | 10 fz |
|---|
| 820 | 2 F /|______Times-Roman fnt |
|---|
| 821 | 0.08575 0. 32 0.00857 0.(GDE2.2 can be run using different window managers. The most common alternative to olwm is the Motif)awidthshow |
|---|
| 822 | 103 90 gm |
|---|
| 823 | 0.12878 0. 32 0.01287 0.(window manager \(mwm\). The only problem in using another window manager is that the status line is not)awidthshow |
|---|
| 824 | 114 90 gm |
|---|
| 825 | -0.04948 0.(displayed. We have added a "Message panel" as an option under "File->Properties" which displays all of the)ashow |
|---|
| 826 | 125 90 gm |
|---|
| 827 | 0.10406 0. 32 0.01040 0.(information contained on the status line.)awidthshow |
|---|
| 828 | 147 90 gm |
|---|
| 829 | -0.03054 0.(People using other window managers may also prefer using xterm, and xedit as default terminals and file)ashow |
|---|
| 830 | 158 90 gm |
|---|
| 831 | -0.02236 0.(editors. This can be accomplished by replacing all occurrences of 'shelltool' and 'textedit' with 'xterm -e' and)ashow |
|---|
| 832 | 169 90 gm |
|---|
| 833 | 0.10833 0. 32 0.01083 0.('xedit' in the $GDE_HELP_DIR/.GDEmenus file.)awidthshow |
|---|
| 834 | 205 90 gm |
|---|
| 835 | 14 fz |
|---|
| 836 | 2 F /|______Times-Roman fnt |
|---|
| 837 | 0.33935 0. 32 0.03393 0.(Installing the GDE)awidthshow |
|---|
| 838 | 228 90 gm |
|---|
| 839 | 10 fz |
|---|
| 840 | 2 F /|______Times-Roman fnt |
|---|
| 841 | -0.03640 0.(Instructions for the source code release are included in the README.install file.)ashow |
|---|
| 842 | 250 90 gm |
|---|
| 843 | -0.00282 0.(The binary installations consist of creating a GDE directory, such as /usr/local/GDE, and un-taring the)ashow |
|---|
| 844 | 261 90 gm |
|---|
| 845 | 0.15594 0. 32 0.01559 0.(installation tarfile into the directory. If you are installing the GDE for your own use, then you can simply)awidthshow |
|---|
| 846 | 272 90 gm |
|---|
| 847 | 0.01647 0. 32 0.00164 0.(make a GDE subdirectory. There is no need to be superuser \(root\) to do the installation in your own)awidthshow |
|---|
| 848 | 283 90 gm |
|---|
| 849 | -0.02723 0.(directory. For example:)ashow |
|---|
| 850 | 302 90 gm |
|---|
| 851 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 852 | 7 fz |
|---|
| 853 | 2 F /|______Courier fnt |
|---|
| 854 | 2.13836 0. 32 0.21383 0.(demo% )awidthshow |
|---|
| 855 | 1 fs |
|---|
| 856 | {}mark T /Courier-Bold /|______Courier-Bold 0 rf |
|---|
| 857 | 2 F /|______Courier-Bold fnt |
|---|
| 858 | 3.93264 0. 32 0.39326 0.(mkdir /usr/local/GDE)awidthshow |
|---|
| 859 | 310 90 gm |
|---|
| 860 | 0 fs |
|---|
| 861 | 2 F /|______Courier fnt |
|---|
| 862 | 2.34207 0. 32 0.23420 0.(demo% )awidthshow |
|---|
| 863 | 1 fs |
|---|
| 864 | 2 F /|______Courier-Bold fnt |
|---|
| 865 | 3.72085 0. 32 0.37208 0.(cp GDE2.2.tar /usr/local/GDE)awidthshow |
|---|
| 866 | 318 90 gm |
|---|
| 867 | 0 fs |
|---|
| 868 | 2 F /|______Courier fnt |
|---|
| 869 | 2.02575 0. 32 0.20257 0.(demo% )awidthshow |
|---|
| 870 | 1 fs |
|---|
| 871 | 2 F /|______Courier-Bold fnt |
|---|
| 872 | 3.53195 0. 32 0.35319 0.(cd /usr/local/GDE)awidthshow |
|---|
| 873 | 326 90 gm |
|---|
| 874 | 0 fs |
|---|
| 875 | 2 F /|______Courier fnt |
|---|
| 876 | 2.06634 0. 32 0.20663 0.(demo% )awidthshow |
|---|
| 877 | 1 fs |
|---|
| 878 | 2 F /|______Courier-Bold fnt |
|---|
| 879 | 2.68066 0. 32 0.26806 0.(tar -xf GDE2.2.tar)awidthshow |
|---|
| 880 | 348 90 gm |
|---|
| 881 | 0 fs |
|---|
| 882 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 883 | 10 fz |
|---|
| 884 | 2 F /|______Times-Roman fnt |
|---|
| 885 | -0.00643 0.(After this, each new user will need to add two lines to their .cshrc file so that they can find the gde programs)ashow |
|---|
| 886 | 359 90 gm |
|---|
| 887 | -0.07226 0.(and files.)ashow |
|---|
| 888 | 378 90 gm |
|---|
| 889 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 890 | 7 fz |
|---|
| 891 | 2 F /|______Courier fnt |
|---|
| 892 | 1.93252 0. 32 0.19325 0.(demo% )awidthshow |
|---|
| 893 | 1 fs |
|---|
| 894 | {}mark T /Courier-Bold /|______Courier-Bold 0 rf |
|---|
| 895 | 2 F /|______Courier-Bold fnt |
|---|
| 896 | 2.27355 0. 32 0.22735 0.(cat >> ~/.cshrc)awidthshow |
|---|
| 897 | 386 90 gm |
|---|
| 898 | 3.89968 0. 32 0.38996 0.(set path = \($path /usr/local/GDE/bin\))awidthshow |
|---|
| 899 | 394 90 gm |
|---|
| 900 | 5.43060 0. 32 0.54306 0.(setenv GDE_HELP_DIR /usr/local/GDE/help/)awidthshow |
|---|
| 901 | 402 90 gm |
|---|
| 902 | 1.60203 0.(^D)ashow |
|---|
| 903 | 421 90 gm |
|---|
| 904 | 0 fs |
|---|
| 905 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 906 | 10 fz |
|---|
| 907 | 2 F /|______Times-Roman fnt |
|---|
| 908 | 0.06118 0. 32 0.00611 0.(You may wish to make a copy of the .GDEmenus file from the help directory into your home directory.)awidthshow |
|---|
| 909 | 432 90 gm |
|---|
| 910 | 0.13107 0. 32 0.01310 0.(This is only necessary if you wish to modify your menus. Copy the demo files from /usr/local/GDE/demo)awidthshow |
|---|
| 911 | 443 90 gm |
|---|
| 912 | -0.02130 0.(into your local directory, and you are now ready to use the GDE.)ashow |
|---|
| 913 | 465 90 gm |
|---|
| 914 | -0.05734 0.(FastA and Blast need to have the properly formatted databases installed in the $GDE_HELP_DIR under the)ashow |
|---|
| 915 | 476 90 gm |
|---|
| 916 | 0.15838 0. 32 0.01583 0.(directories FASTA/PIR, FASTA/GENBANK, BLAST/pir BLAST/genbank. For FASTA, simply copy a)awidthshow |
|---|
| 917 | 487 90 gm |
|---|
| 918 | -0.01397 0.(version of PIR and Genbank into the proper directory. Alternately, the PIR and GENBANK files can be)ashow |
|---|
| 919 | 498 90 gm |
|---|
| 920 | 0.11154 0. 32 0.01115 0.(symbolic links to copies of Genbank held elsewhere on your system. You may need to look at the)awidthshow |
|---|
| 921 | 509 90 gm |
|---|
| 922 | 0.04348 0. 32 0.00434 0.(.GDEmenus file in $GDE_HELP_DIR to verify that you are using the same divisions for these databases.)awidthshow |
|---|
| 923 | 531 90 gm |
|---|
| 924 | 0.01754 0. 32 0.00175 0.(Blast installation involves converting PIR and GENBANK to a temporary FASTA format \(using pir2fasta)awidthshow |
|---|
| 925 | 542 90 gm |
|---|
| 926 | -0.07652 0.(and gb2fasta\) and then using pressdb for nucleic acid, and setdb for amino acid to reformat the databases again)ashow |
|---|
| 927 | 553 90 gm |
|---|
| 928 | 0.23468 0. 32 0.02346 0.(into blast format. The .GDEmenus file is currently set up to search with blast using the following)awidthshow |
|---|
| 929 | 564 90 gm |
|---|
| 930 | 0.01464 0. 32 0.00146 0.(databases: pir, genpept, genupdate, and genbank. If you wish to divide these into subdivisions, then the)awidthshow |
|---|
| 931 | 575 90 gm |
|---|
| 932 | -0.00154 0.(.GDEmenus file will have to be edited.)ashow |
|---|
| 933 | 597 90 gm |
|---|
| 934 | 0.18249 0. 32 0.01824 0.(The most up to date release of blast can be obtained via anonymous ftp to ncbi.nlm.nih.gov. The most)awidthshow |
|---|
| 935 | 608 90 gm |
|---|
| 936 | 0.00610 0. 32 0.00061 0.(recent release of FASTA can be obtained via anonymous ftp to uvaarpa.virginia.edu. It is strongly)awidthshow |
|---|
| 937 | 619 90 gm |
|---|
| 938 | -0.03916 0.(recommended that you retrieve these copies, and become familiar with their setup.)ashow |
|---|
| 939 | 644 90 gm |
|---|
| 940 | 14 fz |
|---|
| 941 | 2 F /|______Times-Roman fnt |
|---|
| 942 | 0.21560 0. 32 0.02156 0.(Using the GDE)awidthshow |
|---|
| 943 | 667 90 gm |
|---|
| 944 | 10 fz |
|---|
| 945 | 2 F /|______Times-Roman fnt |
|---|
| 946 | 0.08346 0. 32 0.00834 0.(It is assumed that the user is familiar with the Unix, and OpenWindows/Xwindows environments. It is also)awidthshow |
|---|
| 947 | 678 90 gm |
|---|
| 948 | -0.04437 0.(assumed that people running standard MIT X-Windows will be using the OpenLook window manager)ashow |
|---|
| 949 | 689 90 gm |
|---|
| 950 | 0.03479 0. 32 0.00347 0.(\(olwm\). Other window managers work with varied success. If you are not certain as to how your system is)awidthshow |
|---|
| 951 | 700 90 gm |
|---|
| 952 | 0.06744 0. 32 0.00674 0.(set up, please contact your systems administrator.)awidthshow |
|---|
| 953 | F T cp |
|---|
| 954 | %%Page: ? 4 |
|---|
| 955 | op |
|---|
| 956 | 31 30 xl |
|---|
| 957 | 1 1 pen |
|---|
| 958 | 753 90 gm |
|---|
| 959 | (nc 31 30 761 582 6 rc)kp |
|---|
| 960 | 1 setTxMode |
|---|
| 961 | 0 fs |
|---|
| 962 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 963 | 7 fz |
|---|
| 964 | 2 F /|______Times-Roman fnt |
|---|
| 965 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 966 | 753 303 gm |
|---|
| 967 | 12 fz |
|---|
| 968 | 2 F /|______Times-Roman fnt |
|---|
| 969 | (4)show |
|---|
| 970 | 81 90 gm |
|---|
| 971 | 10 fz |
|---|
| 972 | 2 F /|______Times-Roman fnt |
|---|
| 973 | -0.00114 0.(Once the window system has started, and a terminal window \(xterm, shelltool etc.\) you can start up the GDE)ashow |
|---|
| 974 | 92 90 gm |
|---|
| 975 | 0.61325 0. 32 0.06132 0.(by typing:)awidthshow |
|---|
| 976 | 114 90 gm |
|---|
| 977 | 1.45217 0. 32 0.14521 0.(demo% )awidthshow |
|---|
| 978 | 1 fs |
|---|
| 979 | {}mark T /Times-Bold /|______Times-Bold 0 rf |
|---|
| 980 | 2 F /|______Times-Bold fnt |
|---|
| 981 | 1.81137 0. 32 0.18113 0.(gde tRNAs)awidthshow |
|---|
| 982 | 136 90 gm |
|---|
| 983 | 0 fs |
|---|
| 984 | 2 F /|______Times-Roman fnt |
|---|
| 985 | -0.00747 0.(This should load the sample data set tRNAs into GDE, and the following window should appear:)ashow |
|---|
| 986 | 0 0 gm |
|---|
| 987 | (nc 138 90 335 544 6 rc)kp |
|---|
| 988 | 64 gr |
|---|
| 989 | 178 136 309 419 1 rc |
|---|
| 990 | T 283 8.72726 136 178 98 778 24 T 1 db |
|---|
| 991 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
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| 1377 | T 283 8 136 292.72726 98 778 22 T 1 db |
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| 1404 | T 283 9 136 300.78259 98 778 23 T 1 db |
|---|
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|---|
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| 1431 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1432 | 148 245 gm |
|---|
| 1433 | (nc 139 244 151 330 6 rc)kp |
|---|
| 1434 | 1 setTxMode |
|---|
| 1435 | 12 fz |
|---|
| 1436 | 2 F /|______Times-Roman fnt |
|---|
| 1437 | -0.11044 0.(Command menus)ashow |
|---|
| 1438 | 322 425 gm |
|---|
| 1439 | (nc 313 424 325 474 6 rc)kp |
|---|
| 1440 | -0.07157 0.(Scrollbars)ashow |
|---|
| 1441 | 313 144 gm |
|---|
| 1442 | (nc 304 143 316 195 6 rc)kp |
|---|
| 1443 | -0.13261 0.(Status line)ashow |
|---|
| 1444 | 250 92 gm |
|---|
| 1445 | (nc 241 91 265 123 6 rc)kp |
|---|
| 1446 | (Short)show |
|---|
| 1447 | 262 92 gm |
|---|
| 1448 | -0.16336 0.(names)ashow |
|---|
| 1449 | 151 416 gm |
|---|
| 1450 | (nc 142 415 166 464 6 rc)kp |
|---|
| 1451 | -0.13940 0.(Sequence)ashow |
|---|
| 1452 | 163 416 gm |
|---|
| 1453 | -0.24850 0.(alignment)ashow |
|---|
| 1454 | 0 0 gm |
|---|
| 1455 | (nc 138 90 335 544 6 rc)kp |
|---|
| 1456 | 0 gr |
|---|
| 1457 | pr |
|---|
| 1458 | 206 195 pl |
|---|
| 1459 | 195 186 pl |
|---|
| 1460 | 193 189 pl |
|---|
| 1461 | 192 192 pl |
|---|
| 1462 | 206 195 pl |
|---|
| 1463 | 1 ep |
|---|
| 1464 | 160 172 gm |
|---|
| 1465 | 193 189 lin |
|---|
| 1466 | pr |
|---|
| 1467 | 223 361 pl |
|---|
| 1468 | 211 368 pl |
|---|
| 1469 | 213 371 pl |
|---|
| 1470 | 216 373 pl |
|---|
| 1471 | 223 361 pl |
|---|
| 1472 | 1 ep |
|---|
| 1473 | 169 415 gm |
|---|
| 1474 | 213 371 lin |
|---|
| 1475 | pr |
|---|
| 1476 | 250 397 pl |
|---|
| 1477 | 262 406 pl |
|---|
| 1478 | 263 403 pl |
|---|
| 1479 | 264 399 pl |
|---|
| 1480 | 250 397 pl |
|---|
| 1481 | 1 ep |
|---|
| 1482 | 313 424 gm |
|---|
| 1483 | 263 403 lin |
|---|
| 1484 | pr |
|---|
| 1485 | 295 325 pl |
|---|
| 1486 | 294 340 pl |
|---|
| 1487 | 298 339 pl |
|---|
| 1488 | 301 338 pl |
|---|
| 1489 | 295 325 pl |
|---|
| 1490 | 1 ep |
|---|
| 1491 | 313 424 gm |
|---|
| 1492 | 298 339 lin |
|---|
| 1493 | pr |
|---|
| 1494 | 232 136 pl |
|---|
| 1495 | 244 129 pl |
|---|
| 1496 | 242 126 pl |
|---|
| 1497 | 239 124 pl |
|---|
| 1498 | 232 136 pl |
|---|
| 1499 | 1 ep |
|---|
| 1500 | 250 118 gm |
|---|
| 1501 | 242 126 lin |
|---|
| 1502 | 160 137 gm |
|---|
| 1503 | (nc 151 136 163 170 6 rc)kp |
|---|
| 1504 | 1 setTxMode |
|---|
| 1505 | (Cursor)show |
|---|
| 1506 | 331 218 gm |
|---|
| 1507 | (nc 322 217 334 327 6 rc)kp |
|---|
| 1508 | -0.10447 0.(Split screen drag point)ashow |
|---|
| 1509 | 242 126 gm |
|---|
| 1510 | (nc 138 90 335 544 6 rc)kp |
|---|
| 1511 | 0 gr |
|---|
| 1512 | pr |
|---|
| 1513 | 291 384 pl |
|---|
| 1514 | 301 373 pl |
|---|
| 1515 | 298 372 pl |
|---|
| 1516 | 294 370 pl |
|---|
| 1517 | 291 384 pl |
|---|
| 1518 | 1 ep |
|---|
| 1519 | 322 325 gm |
|---|
| 1520 | 298 372 lin |
|---|
| 1521 | 233 472 gm |
|---|
| 1522 | (nc 224 471 236 543 6 rc)kp |
|---|
| 1523 | 1 setTxMode |
|---|
| 1524 | -0.16412 0.(Scroll elevator)ashow |
|---|
| 1525 | 298 372 gm |
|---|
| 1526 | (nc 138 90 335 544 6 rc)kp |
|---|
| 1527 | 0 gr |
|---|
| 1528 | pr |
|---|
| 1529 | 214 397 pl |
|---|
| 1530 | 213 412 pl |
|---|
| 1531 | 217 411 pl |
|---|
| 1532 | 220 410 pl |
|---|
| 1533 | 214 397 pl |
|---|
| 1534 | 1 ep |
|---|
| 1535 | 227 465 gm |
|---|
| 1536 | 217 411 lin |
|---|
| 1537 | pr |
|---|
| 1538 | 195 228 pl |
|---|
| 1539 | 181 229 pl |
|---|
| 1540 | 182 232 pl |
|---|
| 1541 | 183 236 pl |
|---|
| 1542 | 195 228 pl |
|---|
| 1543 | 1 ep |
|---|
| 1544 | 150 243 gm |
|---|
| 1545 | 182 232 lin |
|---|
| 1546 | 197 460 gm |
|---|
| 1547 | (nc 188 459 200 515 6 rc)kp |
|---|
| 1548 | 1 setTxMode |
|---|
| 1549 | -0.13102 0.(Resize tabs)ashow |
|---|
| 1550 | 182 232 gm |
|---|
| 1551 | (nc 138 90 335 544 6 rc)kp |
|---|
| 1552 | 0 gr |
|---|
| 1553 | pr |
|---|
| 1554 | 185 401 pl |
|---|
| 1555 | 184 416 pl |
|---|
| 1556 | 188 415 pl |
|---|
| 1557 | 191 414 pl |
|---|
| 1558 | 185 401 pl |
|---|
| 1559 | 1 ep |
|---|
| 1560 | 195 454 gm |
|---|
| 1561 | 188 415 lin |
|---|
| 1562 | pr |
|---|
| 1563 | 295 399 pl |
|---|
| 1564 | 281 404 pl |
|---|
| 1565 | 283 407 pl |
|---|
| 1566 | 286 410 pl |
|---|
| 1567 | 295 399 pl |
|---|
| 1568 | 1 ep |
|---|
| 1569 | 230 445 gm |
|---|
| 1570 | 283 407 lin |
|---|
| 1571 | 219 454 gm |
|---|
| 1572 | 203 465 lin |
|---|
| 1573 | 366 90 gm |
|---|
| 1574 | (nc 31 30 761 582 6 rc)kp |
|---|
| 1575 | 1 setTxMode |
|---|
| 1576 | 10 fz |
|---|
| 1577 | 2 F /|______Times-Roman fnt |
|---|
| 1578 | 0.08865 0. 32 0.00886 0.(This is the sequence alignment editor. It consists of a color alignment display, a set of command menus,)awidthshow |
|---|
| 1579 | 377 90 gm |
|---|
| 1580 | 0.00823 0. 32 0.00082 0.(horizontal and vertical scroll bars to navigate the alignment, a list of short sequence names \(usually the)awidthshow |
|---|
| 1581 | 388 90 gm |
|---|
| 1582 | 0.02410 0. 32 0.00241 0.(LOCUS of a Genbank entry\), and a status line. The cursor is located in the upper left corner.)awidthshow |
|---|
| 1583 | 421 90 gm |
|---|
| 1584 | 12 fz |
|---|
| 1585 | 2 F /|______Times-Roman fnt |
|---|
| 1586 | -0.07032 0.(Using the Mouse)ashow |
|---|
| 1587 | 444 90 gm |
|---|
| 1588 | 10 fz |
|---|
| 1589 | 2 F /|______Times-Roman fnt |
|---|
| 1590 | -0.02319 0.(The mouse follow OpenLook standards for operation. The functions for each button are:)ashow |
|---|
| 1591 | 0 0 gm |
|---|
| 1592 | (nc 457 90 564 329 6 rc)kp |
|---|
| 1593 | 64 gr |
|---|
| 1594 | 476 178 563 238 17.5 17.5 1 rr |
|---|
| 1595 | 0 gr |
|---|
| 1596 | 476.5 178.5 562.5 237.5 17.5 17.5 0 rr |
|---|
| 1597 | 64 gr |
|---|
| 1598 | 491 189 525 196 17.5 17.5 1 rr |
|---|
| 1599 | 0 gr |
|---|
| 1600 | 491.5 189.5 524.5 195.5 17.5 17.5 0 rr |
|---|
| 1601 | 64 gr |
|---|
| 1602 | 491 204 525 212 17.5 17.5 1 rr |
|---|
| 1603 | 0 gr |
|---|
| 1604 | 491.5 204.5 524.5 211.5 17.5 17.5 0 rr |
|---|
| 1605 | 64 gr |
|---|
| 1606 | 491 219 525 227 17.5 17.5 1 rr |
|---|
| 1607 | 0 gr |
|---|
| 1608 | 491.5 219.5 524.5 226.5 17.5 17.5 0 rr |
|---|
| 1609 | 142 315 107 239 th |
|---|
| 1610 | 506 91 gm |
|---|
| 1611 | tu |
|---|
| 1612 | (nc 499 90 508 152 6 rc)kp |
|---|
| 1613 | ts |
|---|
| 1614 | 1 setTxMode |
|---|
| 1615 | 12 fz |
|---|
| 1616 | 2 F /|______Times-Roman fnt |
|---|
| 1617 | -0.24205 0.(Object selection)ashow |
|---|
| 1618 | tu |
|---|
| 1619 | ts |
|---|
| 1620 | 515 91 gm |
|---|
| 1621 | tu |
|---|
| 1622 | (nc 508 90 518 165 6 rc)kp |
|---|
| 1623 | ts |
|---|
| 1624 | -0.14672 0.(clicking & dragging)ashow |
|---|
| 1625 | tu |
|---|
| 1626 | ts |
|---|
| 1627 | 506 269 gm |
|---|
| 1628 | tu |
|---|
| 1629 | (nc 499 269 508 328 6 rc)kp |
|---|
| 1630 | ts |
|---|
| 1631 | -0.20312 0.(Menu selection)ashow |
|---|
| 1632 | tu |
|---|
| 1633 | ts |
|---|
| 1634 | 515 269 gm |
|---|
| 1635 | tu |
|---|
| 1636 | (nc 508 269 518 302 6 rc)kp |
|---|
| 1637 | ts |
|---|
| 1638 | -0.09335 0.(dragging)ashow |
|---|
| 1639 | tu |
|---|
| 1640 | 506 151 gm |
|---|
| 1641 | (nc 457 90 564 329 6 rc)kp |
|---|
| 1642 | 0 gr |
|---|
| 1643 | 506 188 lin |
|---|
| 1644 | 499 181 515 197 165 195 1 ar |
|---|
| 1645 | 506 265 gm |
|---|
| 1646 | 506 231 lin |
|---|
| 1647 | 499 223 515 239 345 375 1 ar |
|---|
| 1648 | ts |
|---|
| 1649 | 464 186 gm |
|---|
| 1650 | tu |
|---|
| 1651 | (nc 457 185 466 237 6 rc)kp |
|---|
| 1652 | ts |
|---|
| 1653 | 1 setTxMode |
|---|
| 1654 | -0.22036 0.(Object adjust)ashow |
|---|
| 1655 | tu |
|---|
| 1656 | 469 208 gm |
|---|
| 1657 | (nc 457 90 564 329 6 rc)kp |
|---|
| 1658 | 0 gr |
|---|
| 1659 | 491 208 lin |
|---|
| 1660 | 484 200 499 216 255 285 1 ar |
|---|
| 1661 | 584 90 gm |
|---|
| 1662 | (nc 31 30 761 582 6 rc)kp |
|---|
| 1663 | 1 setTxMode |
|---|
| 1664 | 10 fz |
|---|
| 1665 | 2 F /|______Times-Roman fnt |
|---|
| 1666 | 0.03082 0. 32 0.00308 0.(The left mouse button is used for placing the cursor, selecting sequences by their short names,)awidthshow |
|---|
| 1667 | 595 90 gm |
|---|
| 1668 | 0.11825 0. 32 0.01182 0.(scrolling/paging, performing split screens, and resizing. The right button is used for pop up menus, and)awidthshow |
|---|
| 1669 | 606 90 gm |
|---|
| 1670 | (scrollbar menus. The middle button is used for extending a text selection.)show |
|---|
| 1671 | 628 90 gm |
|---|
| 1672 | 12 fz |
|---|
| 1673 | 2 F /|______Times-Roman fnt |
|---|
| 1674 | -0.11749 0.(Cursor Movement)ashow |
|---|
| 1675 | 651 90 gm |
|---|
| 1676 | 10 fz |
|---|
| 1677 | 2 F /|______Times-Roman fnt |
|---|
| 1678 | (The cursor can be moved using the arrow keys, or by clicking the mouse within a sequence. The cursors)show |
|---|
| 1679 | 662 90 gm |
|---|
| 1680 | 0.14465 0. 32 0.01446 0.(position is displayed on the status line in both sequence position and alignment column number. The right)awidthshow |
|---|
| 1681 | 673 90 gm |
|---|
| 1682 | 0.06561 0. 32 0.00656 0.(hand side of the status line shows the left and right column positions of the currently active display.)awidthshow |
|---|
| 1683 | 695 90 gm |
|---|
| 1684 | 0.07385 0. 32 0.00738 0.(Scrolling is controlled by the scrollbar elevator. By clicking \(left mouse button\) on one of the elevator)awidthshow |
|---|
| 1685 | 706 90 gm |
|---|
| 1686 | -0.03851 0.(arrows, the screen will scroll one character in that direction. By dragging the elevator center, the screen can)ashow |
|---|
| 1687 | 717 90 gm |
|---|
| 1688 | -0.00059 0.(be moved directly to any location. By clicking directly to one side of the elevator, the screen will scroll one)ashow |
|---|
| 1689 | F T cp |
|---|
| 1690 | %%Page: ? 5 |
|---|
| 1691 | op |
|---|
| 1692 | 31 30 xl |
|---|
| 1693 | 1 1 pen |
|---|
| 1694 | 753 90 gm |
|---|
| 1695 | (nc 31 30 761 582 6 rc)kp |
|---|
| 1696 | 1 setTxMode |
|---|
| 1697 | 0 fs |
|---|
| 1698 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 1699 | 7 fz |
|---|
| 1700 | 2 F /|______Times-Roman fnt |
|---|
| 1701 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 1702 | 753 303 gm |
|---|
| 1703 | 12 fz |
|---|
| 1704 | 2 F /|______Times-Roman fnt |
|---|
| 1705 | (5)show |
|---|
| 1706 | 81 90 gm |
|---|
| 1707 | 10 fz |
|---|
| 1708 | 2 F /|______Times-Roman fnt |
|---|
| 1709 | 0.07583 0. 32 0.00758 0.(full screen in that direction. And by clicking on the scrollbar anchor, the elevator will move to that anchor.)awidthshow |
|---|
| 1710 | 92 90 gm |
|---|
| 1711 | 0.20538 0. 32 0.02053 0.(Scrollbars also have menus associated with them giving other scroll options. Use the right mouse button to)awidthshow |
|---|
| 1712 | 103 90 gm |
|---|
| 1713 | (activate the menu.)show |
|---|
| 1714 | F T cp |
|---|
| 1715 | %%Page: ? 6 |
|---|
| 1716 | op |
|---|
| 1717 | 31 30 xl |
|---|
| 1718 | 1 1 pen |
|---|
| 1719 | 753 90 gm |
|---|
| 1720 | (nc 31 30 761 582 6 rc)kp |
|---|
| 1721 | 1 setTxMode |
|---|
| 1722 | 0 fs |
|---|
| 1723 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 1724 | 7 fz |
|---|
| 1725 | 2 F /|______Times-Roman fnt |
|---|
| 1726 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 1727 | 753 303 gm |
|---|
| 1728 | 12 fz |
|---|
| 1729 | 2 F /|______Times-Roman fnt |
|---|
| 1730 | (6)show |
|---|
| 1731 | 92 90 gm |
|---|
| 1732 | -0.12741 0.(Selecting Sequences)ashow |
|---|
| 1733 | 115 90 gm |
|---|
| 1734 | 10 fz |
|---|
| 1735 | 2 F /|______Times-Roman fnt |
|---|
| 1736 | -0.05250 0.(Sequence selection is necessary before most functions can be performed. Selecting sequences is)ashow |
|---|
| 1737 | 126 90 gm |
|---|
| 1738 | -0.03315 0.(accomplished by clicking or dragging \(left button\) over the short name associated with the sequence\(s\). The)ashow |
|---|
| 1739 | 137 90 gm |
|---|
| 1740 | -0.01461 0.(name of the sequence should become highlighted on the release of the mouse button. By holding down the)ashow |
|---|
| 1741 | 148 90 gm |
|---|
| 1742 | 0.13977 0. 32 0.01397 0.(shift key, you can toggle the selection on or off for any set of sequences. By clicking just to the right of)awidthshow |
|---|
| 1743 | 159 90 gm |
|---|
| 1744 | -0.00563 0.(any sequence short name, you will deselect all of them.)ashow |
|---|
| 1745 | 181 90 gm |
|---|
| 1746 | 12 fz |
|---|
| 1747 | 2 F /|______Times-Roman fnt |
|---|
| 1748 | -0.20321 0.(Selecting Text)ashow |
|---|
| 1749 | 204 90 gm |
|---|
| 1750 | 10 fz |
|---|
| 1751 | 2 F /|______Times-Roman fnt |
|---|
| 1752 | -0.00436 0.(Selecting text is accomplished in much the same way as selecting entire sequences. In the editing window,)ashow |
|---|
| 1753 | 215 90 gm |
|---|
| 1754 | 0.04013 0. 32 0.00401 0.(you can drag the mouse pointer over a rectangular region the select a block of text. By using the shift key)awidthshow |
|---|
| 1755 | 226 90 gm |
|---|
| 1756 | -0.01466 0.(\(or the middle mouse button\) you can adjust the selection to include other sequences, or other columns of)ashow |
|---|
| 1757 | 237 90 gm |
|---|
| 1758 | -0.01264 0.(text. If groups are enabled, GDE will automatically select all sequences in a group if any one sequence in a)ashow |
|---|
| 1759 | 248 90 gm |
|---|
| 1760 | -0.07606 0.(group is selected \(See Sequence Editing\).)ashow |
|---|
| 1761 | 270 90 gm |
|---|
| 1762 | 12 fz |
|---|
| 1763 | 2 F /|______Times-Roman fnt |
|---|
| 1764 | -0.12741 0.(Sequence Protection)ashow |
|---|
| 1765 | 293 90 gm |
|---|
| 1766 | 10 fz |
|---|
| 1767 | 2 F /|______Times-Roman fnt |
|---|
| 1768 | -0.05520 0.(All sequences can be individually protected against accidental modification. This is accomplished by)ashow |
|---|
| 1769 | 304 90 gm |
|---|
| 1770 | -0.01127 0.(selecting the set of sequences that you are interested in editing, and choosing the "Set protections" menu)ashow |
|---|
| 1771 | 315 90 gm |
|---|
| 1772 | 0.03738 0. 32 0.00373 0.(item under the File menu. Your choices are:)awidthshow |
|---|
| 1773 | 337 90 gm |
|---|
| 1774 | -0.03042 0.(Unambiguous modification)ashow |
|---|
| 1775 | 337 306 gm |
|---|
| 1776 | -0.13563 0.(Changing/adding/deleting regular characters)ashow |
|---|
| 1777 | 348 90 gm |
|---|
| 1778 | -0.02313 0.(Ambiguous changes)ashow |
|---|
| 1779 | 348 306 gm |
|---|
| 1780 | 0.28198 0. 32 0.02819 0.(Changing ambiguous codes \('N', 'X'...\))awidthshow |
|---|
| 1781 | 359 90 gm |
|---|
| 1782 | -0.01168 0.(Alignment modifications)ashow |
|---|
| 1783 | 359 306 gm |
|---|
| 1784 | 0.23391 0. 32 0.02339 0.(Changing alignment gaps \('-', '~'\))awidthshow |
|---|
| 1785 | 381 90 gm |
|---|
| 1786 | 12 fz |
|---|
| 1787 | 2 F /|______Times-Roman fnt |
|---|
| 1788 | -0.15385 0.(Sequence Editing)ashow |
|---|
| 1789 | 404 90 gm |
|---|
| 1790 | 10 fz |
|---|
| 1791 | 2 F /|______Times-Roman fnt |
|---|
| 1792 | -0.04483 0.(Sequences can be edited by simply typing to insert, and using the delete or backspace key to delete characters.)ashow |
|---|
| 1793 | 415 90 gm |
|---|
| 1794 | 0.05371 0. 32 0.00537 0.(Sequences must have the proper protections set to allow the type of modifications that you are attempting.)awidthshow |
|---|
| 1795 | 426 90 gm |
|---|
| 1796 | 0.06790 0. 32 0.00679 0.(The default protection level only allows modification to the alignment, but not to the sequences themselves.)awidthshow |
|---|
| 1797 | 437 90 gm |
|---|
| 1798 | -0.00852 0.(The Sun function keys, cut, copy and paste are used to edit selected text. Text selections work in rectangular)ashow |
|---|
| 1799 | 448 90 gm |
|---|
| 1800 | (\(possibly disjointed\) regions. You can cut or copy a block of sequence text, and paste it to a new cursor)show |
|---|
| 1801 | 459 90 gm |
|---|
| 1802 | 0.10787 0. 32 0.01078 0.(location using these three keys.)awidthshow |
|---|
| 1803 | 492 90 gm |
|---|
| 1804 | 12 fz |
|---|
| 1805 | 2 F /|______Times-Roman fnt |
|---|
| 1806 | -0.16456 0.(Sequence Yanking:)ashow |
|---|
| 1807 | 515 90 gm |
|---|
| 1808 | 10 fz |
|---|
| 1809 | 2 F /|______Times-Roman fnt |
|---|
| 1810 | 0.03494 0. 32 0.00349 0.(Yanking referes to the "pulling" of a base to fill a gapped position like beads on an abacus. Place the cursor)awidthshow |
|---|
| 1811 | 526 90 gm |
|---|
| 1812 | 0.01922 0. 32 0.00192 0.(over a gap character, and type <crtl> k to yank the character from the left into the current position. Type)awidthshow |
|---|
| 1813 | 537 90 gm |
|---|
| 1814 | 0.05645 0. 32 0.00564 0.(<ctrl>l to pull the character from the right. Repeat counts are honored \("20 <ctrl> l" will yank 20 characters)awidthshow |
|---|
| 1815 | 548 90 gm |
|---|
| 1816 | 0.18218 0. 32 0.01821 0.(from the right\).)awidthshow |
|---|
| 1817 | F T cp |
|---|
| 1818 | %%Page: ? 7 |
|---|
| 1819 | op |
|---|
| 1820 | 31 30 xl |
|---|
| 1821 | 1 1 pen |
|---|
| 1822 | 753 90 gm |
|---|
| 1823 | (nc 31 30 761 582 6 rc)kp |
|---|
| 1824 | 1 setTxMode |
|---|
| 1825 | 0 fs |
|---|
| 1826 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 1827 | 7 fz |
|---|
| 1828 | 2 F /|______Times-Roman fnt |
|---|
| 1829 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 1830 | 753 303 gm |
|---|
| 1831 | 12 fz |
|---|
| 1832 | 2 F /|______Times-Roman fnt |
|---|
| 1833 | (7)show |
|---|
| 1834 | 92 90 gm |
|---|
| 1835 | -0.11007 0.(Repeat Counts)ashow |
|---|
| 1836 | 115 90 gm |
|---|
| 1837 | 10 fz |
|---|
| 1838 | 2 F /|______Times-Roman fnt |
|---|
| 1839 | -0.02497 0.(By typing a numeric value before an editing function you can insert, delete or move a number of characters at)ashow |
|---|
| 1840 | 126 90 gm |
|---|
| 1841 | -0.00587 0.(a time. The current repeat count is displayed on the status line, and can be cleared by clicking the left mouse)ashow |
|---|
| 1842 | 137 90 gm |
|---|
| 1843 | 0.08789 0. 32 0.00878 0.(button in the alignment window. In order to insert twenty gaps into a sequence, one would type "20-". In)awidthshow |
|---|
| 1844 | 148 90 gm |
|---|
| 1845 | -0.02680 0.(order to move down five sequences, one would type "5)ashow |
|---|
| 1846 | {}mark T /Helvetica /|______Helvetica 0 rf |
|---|
| 1847 | 7.27995 fz |
|---|
| 1848 | 2 F /|______Helvetica fnt |
|---|
| 1849 | (\257)show |
|---|
| 1850 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 1851 | 10 fz |
|---|
| 1852 | 2 F /|______Times-Roman fnt |
|---|
| 1853 | -0.02607 0.(". This works with all sequence types, however the)ashow |
|---|
| 1854 | 159 90 gm |
|---|
| 1855 | -0.01254 0.(meta \(diamond\) key must be held down when the cursor is in a text or mask sequence. This is because)ashow |
|---|
| 1856 | 170 90 gm |
|---|
| 1857 | -0.07215 0.(numbers are valid characters in these sequences, and would otherwise be confused with repeat counts.)ashow |
|---|
| 1858 | 192 90 gm |
|---|
| 1859 | 12 fz |
|---|
| 1860 | 2 F /|______Times-Roman fnt |
|---|
| 1861 | -0.11955 0.(Split Screen)ashow |
|---|
| 1862 | 215 90 gm |
|---|
| 1863 | 10 fz |
|---|
| 1864 | 2 F /|______Times-Roman fnt |
|---|
| 1865 | 0.11734 0. 32 0.01173 0.(Split screen editing allows the viewing one region while editing another. This is very useful for aligning)awidthshow |
|---|
| 1866 | 226 90 gm |
|---|
| 1867 | -0.03680 0.("downstream" regions by editing "upstream".)ashow |
|---|
| 1868 | 248 90 gm |
|---|
| 1869 | 0.14480 0. 32 0.01448 0.(The alignment window can be split horizontally into two or more windows into the alignment. These)awidthshow |
|---|
| 1870 | 259 90 gm |
|---|
| 1871 | -0.03460 0.(windows scroll independently of each other both horizontally and vertically. The short names displayed to)ashow |
|---|
| 1872 | 270 90 gm |
|---|
| 1873 | -0.01350 0.(the left of the alignment correspond to the window that was last scrolled or edited. Care should be taken in)ashow |
|---|
| 1874 | 281 90 gm |
|---|
| 1875 | -0.04472 0.(any modifications done in this mode so that edits are performed on the correct sequence. To avoid confusion)ashow |
|---|
| 1876 | 292 90 gm |
|---|
| 1877 | 0.00595 0. 32 0.00059 0.(during split screen operations, the vertical scroll bars may be locked so that all windows scroll together.)awidthshow |
|---|
| 1878 | 0 0 gm |
|---|
| 1879 | (nc 294 162 447 412 6 rc)kp |
|---|
| 1880 | 64 gr |
|---|
| 1881 | 295 163 415 411 1 rc |
|---|
| 1882 | T 248 15.90908 163 295 70 554 35 T 1 db |
|---|
| 1883 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1884 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1885 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1886 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1887 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1888 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1889 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 1890 | 00000FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF0000000 |
|---|
| 1891 | 00001FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF0020000 |
|---|
| 1892 | 00001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000 |
|---|
| 1893 | 00001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020020000 |
|---|
| 1894 | 0007F3FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE7E20000 |
|---|
| 1895 | 00040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000 |
|---|
| 1896 | 00040000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000 |
|---|
| 1897 | 00040000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000 |
|---|
| 1898 | 00040000020000000000000000000000000000000000000000000000000030000000000000000003000000000000000000000000000000000000000000000000000000020000 |
|---|
| 1899 | 0004001FC200000000000000000000000000000000000000000F0000000430003E00080007E00003000000000000008000000000000000000000000000000000000000020000 |
|---|
| 1900 | 003C001F820000000000000000000000000000000000000000198000000C000033001800060000000000000000000180000000000000000000000000000000000000001E0000 |
|---|
| 1901 | 0060000F020000000000000000000000000000000000000000300F0D879F31E0318F3E780606C66336786C3661E1B3E000000000000000000000000000000000000000060000 |
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| 1902 | 0060000F02000000000000000000000000000000000000000030198ECCCC3330319998CC0607666336CC763BB331D98000000000000000000000000000000000000000060000 |
|---|
| 1903 | 0060000602000000000000000000000000000000000000000030198CCCCC33003181980C07C6666338CC66333331998000000000000000000000000000000000000000060000 |
|---|
| 1904 | 00600006020000000000000000000000000000000000000000319F8CCFCC3300318F987C0606634330CC663333F1998000000000000000000000000000000000000000060000 |
|---|
| 1905 | 0060000002000000000000000000000000000000000000000031980CCC0C3300319998CC0606634330CC66333301998000000000000000000000000000000000000000060000 |
|---|
| 1906 | 0060000002000000000000000000000000000000000000000019988CCC4C3310331998CC0606618330CC66333311998000000000000000000000000000000000000000060000 |
|---|
| 1907 | 006000000200000000000000000000000000000000000000000F8F0CC78731E03E0ECE7607E661833078663331E198E000000000000000000000000000000000000000060000 |
|---|
| 1908 | 00600000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1909 | 006000FFFC0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1910 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1911 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1912 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1913 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000460000 |
|---|
| 1914 | 0061FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFC60000 |
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| 1915 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1916 | 0063FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFC60000 |
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| 1917 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1918 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1919 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1920 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1921 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1922 | T 248 15 163 310.88232 70 554 34 T 1 db |
|---|
| 1923 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1924 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1925 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1926 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1927 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1928 | 00600000088000000800000001100000040000000000002000000000010000000000000100000008000000000000000000200000000000000000000000000000000000060000 |
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| 1929 | 00600007888000000400001F011100000200000F8210C0278421800000800001E00010010000000400001F002000000000100000000000000000000000000000000000060000 |
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| 1930 | 00600004008000000400001001010000020000084310C04446218000008000011000100000000004000010002000000000100000000000000000000000000000000000060000 |
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| 1931 | 00600004088E00FE020000100F13C07F01000008231120444622401FC040000112C63CE11600FE02000010227ACE1C03F8080000000000000000000000000000000000060000 |
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| 1932 | 00600004089100FC020000101111007E01000008229120844522401F80400001130911111900FC020000102223112003F0080000000000000000000000000000000000060000 |
|---|
| 1933 | 00600007889100780200001E1111003C0100000822D1208785A2400F00400001121091111100780200001E1422012001E0080000000000000000000000000000000000060000 |
|---|
| 1934 | 00600004089F0078020000101111003C010000082253F08484A7E00F00400001E21091F11100780200001008220F1801E0080000000000000000000000000000000000060000 |
|---|
| 1935 | 006000040890003002000010111100180100000822321104446420060040000102109101110030020000101422110400C0080000000000000000000000000000000000060000 |
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| 1936 | 006000040891003002000010131100180100000842321104446420060040000102091111110030020000102222110400C0080000000000000000000000000000000000060000 |
|---|
| 1937 | 00600004088E00000200001F0D10C0000100000F82121204442420000040000102060CE11100000200001F221A0EB80000080000000000000000000000000000000000060000 |
|---|
| 1938 | 00600000000000000400000000000000020000000000020000000000008000000000000000000004000000000000000000100000000000000000000000000000000000060000 |
|---|
| 1939 | 00600000000000000400000000000000020000000000000000000000008000000000000000000004000000000000000000100000000000000000000000000000000000060000 |
|---|
| 1940 | 00600000000000000800000000000000040000000000000000000000010000000000000000000008000000000000000000200000000000000000000000000000000000060000 |
|---|
| 1941 | 00600400000000001000080000000000080004000000000000000000020001000000000000000010000800000000000000400000000000000000000000000000000000060000 |
|---|
| 1942 | 006003000000000060000600000000003000030000000000000000000C0000C00000000000000060000600000000000001800000000000000000000000000000000000060000 |
|---|
| 1943 | 006000FFFFFFFFFF800001FFFFFFFFFFC00000FFFFFFFFFFFFFFFFFFF000003FFFFFFFFFFFFFFF800001FFFFFFFFFFFFFE000000000000000000000000000000000000060000 |
|---|
| 1944 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1945 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1946 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1947 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1948 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1949 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1950 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1951 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
|---|
| 1952 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1953 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1954 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1955 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1956 | 00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000 |
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| 1957 | 0063FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE00023FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE0002060000 |
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| 1958 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 1959 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 1960 | 00620000000000000000000000000000000000001FF00000000000000000000000000000000200023FC000000000000000000000000000000000000000000000020002060000 |
|---|
| 1961 | T 248 15 163 325.90908 70 554 33 T 1 db |
|---|
| 1962 | 0063FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE00023FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE0002060000 |
|---|
| 1963 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 1964 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
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| 1965 | 00620000000000000000000000000000000000001FF00000000000000000000000000000000200023FC000000000000000000000000000000000000000000000020002060000 |
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| 1966 | 00620000000000000000000000000000000000001FF00000000000000000000000000000000200023FC000000000000000000000000000000000000000000000020002060000 |
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| 1967 | 00620FEF060878000000000000000000000000001F11C0070E1DFC67F183877F1C3070EFE3863FFE3C47001C3877F19FC60E1DFC70C1C3BF8E1C3800C1C3070E1E3FFE060000 |
|---|
| 1968 | 00620108861844000000000000000000000000001ED24009122420608184890824309121048A00003B490024489081820612242090C2448412244800C2430912260000060000 |
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| 1969 | 00620108892844000000000000000000000000001DF400102040209082481008404902010812000037D000408100824209204021012408042040800124049020420000060000 |
|---|
| 1970 | 00620108890844000000000000000000000000001DF400102040209082481008404902010812000037D000408100824209204021012408042040800124049020420000060000 |
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| 1971 | 0062010F090878000000000000000000000000001DF400102040209082481008404902010812000237D000408100824209204021012408042040800124049020420002060000 |
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| 1972 | 006201091F8844000000000000000000000000001DD44011224021F887E8900840FD12010892000237510044890087E21FA2402103F4480422448803F44FD120460002060000 |
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| 1973 | 00620108908844000000000000000000000000001DD4401122402108842890084085120108920002375100448900842210A24021021448042244880214485120460002060000 |
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| 1974 | 00620108908844000000000000000000000000001ED24009122021088424880820849101048A00023B4900244880842210922020821244041224480212484910260002060000 |
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| 1975 | 00620108908878000000000000000000000000001F11C0070E1C2108842387081C8470E1038601823C47001C38708422108E1C207211C3840E1C380211C8470E1E0182060000 |
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| 1976 | 00620000000000000000000000000000000000001FF00000000000000000000000000000000203C23FC0000000000000000000000000000000000000000000000203C2060000 |
|---|
| 1977 | 00620000000000000000000000000000000000001FF00000000000000000000000000000000207E23FC0000000000000000000000000000000000000000000000207E2060000 |
|---|
| 1978 | 00620000000000000000000000000000000000001800000000000000000000000000000000020FF2200000000000000000000000000000000000000000000000020FF2060000 |
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| 1979 | 00620000000000000000000000000000000000001800000000000000000000000000000000020FF2200000000000000000000000000000000000000000000000020FF2060000 |
|---|
| 1980 | 00620FEF0700000000000000000000000000000018E1C3870E1DFC07F183070C18307001C386000223870E1C3877F01FC60C1C3060C1C0070E1DFFF8CFE0077F1A0002060000 |
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| 1981 | 006201088900000000000000000000000000000019224489122420008183090C18309002448A00022489122448908002060C243060C2400912242040C10009081A0002060000 |
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| 1982 | 00620108900000000000000000000000000000001A04081020402000824490122449000408120002281020408100800209124048912400102040204121001008260002060000 |
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| 1983 | 00620108900000000000000000000000000000001A04081020402000824490122449000408120002281020408100800209124048912400102040204121001008260002060000 |
|---|
| 1984 | 0062010F100000000000000000000000000000001A04081020402000824490122449000408120002281020408100800209124048912400102040204121001008260002060000 |
|---|
| 1985 | 00620109100000000000000000000000000000001A2448112044200087EFD03F7EFD10040892000228912044811080021FBF40FDFBF4401022442043F10011087E0002060000 |
|---|
| 1986 | 00620108900000000000000000000000000000001A24481120442000842850214285100408920002289120448110800210A140850A1440102244204211001108420002060000 |
|---|
| 1987 | 006201088800000000000000000000000000000019224409102420008428482142849002048A0002248910244090800210A120850A1240081224204211000908420002060000 |
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| 1988 | 006201088700000000000000000000000000000018E1C3870E1C20008428472142847001C386000223870E1C3870800210A11C850A11C0070E1C204211000708420002060000 |
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| 1989 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
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| 1990 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
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| 1991 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
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| 1992 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
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| 1993 | 00620FEF1C08000000000000000000000000000018E1C0060E1C3877F183BFFF1C3077F1C3860002238700183870E1DFC60EFFFC70C1DFC70E1DFFF8C1C3067F1A0002060000 |
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| 1994 | 006201089218000000000000000000000000000019224006122448908184840824309082448A000224890018489122420612102090C2420912242040C24306081A0002060000 |
|---|
| 1995 | 00620108912800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
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| 1996 | 00620108910800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
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| 1997 | 0062010F110800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
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| 1998 | 00620109110800000000000000000000000000001A24401FA240891087E8840840FD1084089200022891007E890224421FA2102103F4421022442043F44FDF887E0002060000 |
|---|
| 1999 | T 248 15 163 340.88232 70 554 34 T 1 db |
|---|
| 2000 | 00620108912800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
|---|
| 2001 | 00620108910800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
|---|
| 2002 | 0062010F110800000000000000000000000000001A04000920408100824804084049008408120002281000248102040209201021012402102040204124048908260002060000 |
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| 2003 | 00620109110800000000000000000000000000001A24401FA240891087E8840840FD1084089200022891007E890224421FA2102103F4421022442043F44FDF887E0002060000 |
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| 2004 | 00620108910800000000000000000000000000001A244010A2408910842884084085108408920002289100428902244210A21021021442102244204214485088420002060000 |
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| 2005 | 006201089208000000000000000000000000000019224010922048908424840820849082048A3FFE248900424881224210921020821242081224204212485088423FFE060000 |
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| 2006 | 006201089C08000000000000000000000000000018E1C0108E1C3870842384081C847081C3860002238700423870E1C2108E10207211C2070E1C204211C85088420002060000 |
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| 2007 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 2008 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 2009 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 2010 | 00620000000000000000000000000000000000001800000000000000000000000000000000020002200000000000000000000000000000000000000000000000020002060000 |
|---|
| 2011 | 00620FEF1F08000000000000000000000000000018EFE3870E1DFC07F1C3BF8EFE3070C1C3860FF223BF8E1C3877F01FC70EFE3BF8C1C3070E1C3870C1C3860E1A0FF2060000 |
|---|
| 2012 | 0062010890180000000000000000000000000000192104891224200082448412103090C2448A0FF224841224489080020912104840C2430912244890C24486121A0FF2060000 |
|---|
| 2013 | 00620108902800000000000000000000000000001A010810204020008408042010490124081207E22804204081008002102010804124049020408101240809202607E2060000 |
|---|
| 2014 | 00620108900800000000000000000000000000001A010810204020008408042010490124081203C22804204081008002102010804124049020408101240809202603C2060000 |
|---|
| 2015 | 0062010F1E0800000000000000000000000000001A01081020402000840804201049012408120182280420408100800210201080412404902040810124080920260182060000 |
|---|
| 2016 | 00620109100800000000000000000000000000001A210810204020008408842010FD13F44892000228842040810080021022108043F44FD122408103F4489FA07E0002060000 |
|---|
| 2017 | 00620108900800000000000000000000000000001A210810204020008408842010851214489200022884204081008002102210804214485122408102144890A0420002060000 |
|---|
| 2018 | 006201089008000000000000000000000000000019210408102020008204841010849212448A0002248410204080800208121040421248491220408212449090420002060000 |
|---|
| 2019 | 006201089F08000000000000000000000000000018E103870E1C200081C3840E10847211C386000223840E1C38708002070E10384211C8470E1C387211C3908E420002060000 |
|---|
| 2020 | 00620000000000000000000000000000000000001800000000000000000000000000000000023FFE200000000000000000000000000000000000000000000000023FFE060000 |
|---|
| 2021 | 00620000000000000000000000000000000000001800000000000000000000000000000000020000200000000000000000000000000000000000000000000000020000060000 |
|---|
| 2022 | 006200000000000000000000000000000000000018000000000000000000000000000000000201C02000000000000000000000000000000000000000000000000201C0060000 |
|---|
| 2023 | 006200000000000000000000000000000000000018000000000000000000000000000000000201C02000000000000000000000000000000000000000000000000201C0060000 |
|---|
| 2024 | 00620FEF1F1C000000000000000000000000000018EFE3870E1DFC07F1C3BF8EFE3070C1C38601C023BF8E1C3877F01FC70EFE3BF8C1C3070E1C3870C1C3860E1A01C0060000 |
|---|
| 2025 | 0062010890220000000000000000000000000000192104891224200082448412103090C2448A01C024841224489080020912104840C2430912244890C24486121A01C0060000 |
|---|
| 2026 | 00620108900200000000000000000000000000001A010810204020008408042010490124081201C02804204081008002102010804124049020408101240809202601C0060000 |
|---|
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| 2192 | 48 gr |
|---|
| 2193 | 391.5 255.5 446.5 314.5 90 180 0 ar |
|---|
| 2194 | 391.5 255.5 446.5 314.5 0 90 0 ar |
|---|
| 2195 | 0 0 2 9 9 2 dh |
|---|
| 2196 | 419 314 gm |
|---|
| 2197 | 425 321 lin |
|---|
| 2198 | rh |
|---|
| 2199 | psb |
|---|
| 2200 | pse |
|---|
| 2201 | 0 0 2 9 9 2 dh |
|---|
| 2202 | 419 314 gm |
|---|
| 2203 | 425 307 lin |
|---|
| 2204 | rh |
|---|
| 2205 | psb |
|---|
| 2206 | pse |
|---|
| 2207 | 0 0 pen |
|---|
| 2208 | 400 238 gm |
|---|
| 2209 | 400 238 lin |
|---|
| 2210 | nc ct 39 0 put |
|---|
| 2211 | pr |
|---|
| 2212 | 409 256 pl |
|---|
| 2213 | 400 238 pl |
|---|
| 2214 | 418 247 pl |
|---|
| 2215 | 409 256 pl |
|---|
| 2216 | 1 ep |
|---|
| 2217 | 1 1 pen |
|---|
| 2218 | 409 256 gm |
|---|
| 2219 | bp |
|---|
| 2220 | 400 238 T qi |
|---|
| 2221 | 400 238 qc |
|---|
| 2222 | 418 247 qc |
|---|
| 2223 | 418 247 qc |
|---|
| 2224 | 409 256 qc |
|---|
| 2225 | 409 256 T qq |
|---|
| 2226 | qf |
|---|
| 2227 | qf |
|---|
| 2228 | ef |
|---|
| 2229 | 15 ec |
|---|
| 2230 | (nc 294 162 447 412 6 rc)kp |
|---|
| 2231 | 2 2 pen |
|---|
| 2232 | 408 246 gm |
|---|
| 2233 | 417 255 lin |
|---|
| 2234 | 0 0 pen |
|---|
| 2235 | 401 306 gm |
|---|
| 2236 | 401 306 lin |
|---|
| 2237 | nc ct 39 0 put |
|---|
| 2238 | 0 gr |
|---|
| 2239 | pr |
|---|
| 2240 | 410 324 pl |
|---|
| 2241 | 401 306 pl |
|---|
| 2242 | 419 315 pl |
|---|
| 2243 | 410 324 pl |
|---|
| 2244 | 1 ep |
|---|
| 2245 | 1 1 pen |
|---|
| 2246 | 410 324 gm |
|---|
| 2247 | bp |
|---|
| 2248 | 401 306 T qi |
|---|
| 2249 | 401 306 qc |
|---|
| 2250 | 419 315 qc |
|---|
| 2251 | 419 315 qc |
|---|
| 2252 | 410 324 qc |
|---|
| 2253 | 410 324 T qq |
|---|
| 2254 | qf |
|---|
| 2255 | qf |
|---|
| 2256 | ef |
|---|
| 2257 | 15 ec |
|---|
| 2258 | (nc 294 162 447 412 6 rc)kp |
|---|
| 2259 | 2 2 pen |
|---|
| 2260 | 409 314 gm |
|---|
| 2261 | 418 323 lin |
|---|
| 2262 | 1 1 pen |
|---|
| 2263 | 467 90 gm |
|---|
| 2264 | (nc 31 30 761 582 6 rc)kp |
|---|
| 2265 | 1 setTxMode |
|---|
| 2266 | 2 F /|______Times-Roman fnt |
|---|
| 2267 | 0.05432 0. 32 0.00543 0.(In order to split a window into two views, grab \(left button\) the left or right anchor \(small rectangle\) at)awidthshow |
|---|
| 2268 | 478 90 gm |
|---|
| 2269 | -0.02000 0.(either end of the horizontal scrollbar and drag to the middle of the window. This should split the window)ashow |
|---|
| 2270 | 489 90 gm |
|---|
| 2271 | 0.21789 0. 32 0.02178 0.(into two views. To join two views, place the mouse pointer on the horizontal scroll bar use the menu \(right)awidthshow |
|---|
| 2272 | 500 90 gm |
|---|
| 2273 | 0.61981 0. 32 0.06198 0.(button\) .)awidthshow |
|---|
| 2274 | 522 90 gm |
|---|
| 2275 | (The views are NOT two copies of the alignment. Changes in one window are reflected in the other. Users)show |
|---|
| 2276 | 533 90 gm |
|---|
| 2277 | 0.00976 0. 32 0.00097 0.(should not be confused by this fact.)awidthshow |
|---|
| 2278 | 555 90 gm |
|---|
| 2279 | 12 fz |
|---|
| 2280 | 2 F /|______Times-Roman fnt |
|---|
| 2281 | -0.06040 0.(Sequence Grouping)ashow |
|---|
| 2282 | 578 90 gm |
|---|
| 2283 | 10 fz |
|---|
| 2284 | 2 F /|______Times-Roman fnt |
|---|
| 2285 | -0.00846 0.(Sequences can be grouped for editing functions. This is very helpful when trying to adjust several sub)ashow |
|---|
| 2286 | 589 90 gm |
|---|
| 2287 | -0.00823 0.(alignments. When grouped, all sequences within a group will be affected by editing in any member of the)ashow |
|---|
| 2288 | 600 90 gm |
|---|
| 2289 | 0.07675 0. 32 0.00767 0.(group. All sequences within a group must have protections set to allow modification before any one will be)awidthshow |
|---|
| 2290 | 611 90 gm |
|---|
| 2291 | -0.20011 0.(modified.)ashow |
|---|
| 2292 | 633 90 gm |
|---|
| 2293 | -0.03013 0.(In order to group sequences, select the names of the sequences that should fall within a group, and select)ashow |
|---|
| 2294 | 644 90 gm |
|---|
| 2295 | -0.02406 0.(Group under the Edit menu. A number will be placed at the left of the sequence representing its assigned)ashow |
|---|
| 2296 | 655 90 gm |
|---|
| 2297 | -0.04641 0.(group number. To any sequence or sequences, the user selects those sequences and uses the Ungroup)ashow |
|---|
| 2298 | 666 90 gm |
|---|
| 2299 | -0.06661 0.(command under the Edit menu.)ashow |
|---|
| 2300 | 688 90 gm |
|---|
| 2301 | 12 fz |
|---|
| 2302 | 2 F /|______Times-Roman fnt |
|---|
| 2303 | -0.11912 0.(Special keys)ashow |
|---|
| 2304 | F T cp |
|---|
| 2305 | %%Page: ? 8 |
|---|
| 2306 | op |
|---|
| 2307 | 31 30 xl |
|---|
| 2308 | 1 1 pen |
|---|
| 2309 | 753 90 gm |
|---|
| 2310 | (nc 31 30 761 582 6 rc)kp |
|---|
| 2311 | 1 setTxMode |
|---|
| 2312 | 0 fs |
|---|
| 2313 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 2314 | 7 fz |
|---|
| 2315 | 2 F /|______Times-Roman fnt |
|---|
| 2316 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 2317 | 753 303 gm |
|---|
| 2318 | 12 fz |
|---|
| 2319 | 2 F /|______Times-Roman fnt |
|---|
| 2320 | (8)show |
|---|
| 2321 | 81 90 gm |
|---|
| 2322 | 10 fz |
|---|
| 2323 | 2 F /|______Times-Roman fnt |
|---|
| 2324 | -0.01528 0.(There are also a few special function keys used in the GDE. Some functions have meta key equivalences so)ashow |
|---|
| 2325 | 92 90 gm |
|---|
| 2326 | -0.01637 0.(that they can be called from the keyboard, instead of by the menu system. The "meta" key is a standard)ashow |
|---|
| 2327 | 103 90 gm |
|---|
| 2328 | -0.05270 0.(property of X windows, and may be remapped to a different key symbol for different keyboards. For)ashow |
|---|
| 2329 | 115 90 gm |
|---|
| 2330 | 0.19775 0. 32 0.01977 0.(example, meta on Sun workstations is represented with a )awidthshow |
|---|
| 2331 | {}mark T /Helvetica /|______Helvetica 0 rf |
|---|
| 2332 | 9.35993 fz |
|---|
| 2333 | 2 F /|______Helvetica fnt |
|---|
| 2334 | 0.06533 0.(\340)ashow |
|---|
| 2335 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 2336 | 10 fz |
|---|
| 2337 | 2 F /|______Times-Roman fnt |
|---|
| 2338 | 0.19256 0. 32 0.01925 0.(, where on a Macintosh running MacX it might)awidthshow |
|---|
| 2339 | 126 90 gm |
|---|
| 2340 | 0.13610 0. 32 0.01361 0.(be the "apple" key. The operation of the key is the same as the control or shift key, it is held down while)awidthshow |
|---|
| 2341 | 137 90 gm |
|---|
| 2342 | -0.04826 0.(pressing the second key in the sequence.)ashow |
|---|
| 2343 | 159 90 gm |
|---|
| 2344 | 0.07690 0. 32 0.00769 0.(Cut text, copy text and paste text are mapped to the Openlook equivalent keys \(L10, L6, and L8 on Sun)awidthshow |
|---|
| 2345 | 170 90 gm |
|---|
| 2346 | -0.03259 0.(keyboards\). Other meta keys are defined in the .GDEmenus file, and may be changed to suit your)ashow |
|---|
| 2347 | 181 90 gm |
|---|
| 2348 | -0.23315 0.(preferences.)ashow |
|---|
| 2349 | 206 90 gm |
|---|
| 2350 | 14 fz |
|---|
| 2351 | 2 F /|______Times-Roman fnt |
|---|
| 2352 | -0.01499 0.(Data Types)ashow |
|---|
| 2353 | 229 90 gm |
|---|
| 2354 | 10 fz |
|---|
| 2355 | 2 F /|______Times-Roman fnt |
|---|
| 2356 | 0.01342 0. 32 0.00134 0.(The GDE supports several data types. The data types supported in 2.2 are DNA, RNA, protein \(single letter)awidthshow |
|---|
| 2357 | 240 90 gm |
|---|
| 2358 | -0.08953 0.(codes\), mask sequence, and text.)ashow |
|---|
| 2359 | 262 90 gm |
|---|
| 2360 | 12 fz |
|---|
| 2361 | 2 F /|______Times-Roman fnt |
|---|
| 2362 | -0.16458 0.(DNA and RNA)ashow |
|---|
| 2363 | 285 90 gm |
|---|
| 2364 | 10 fz |
|---|
| 2365 | 2 F /|______Times-Roman fnt |
|---|
| 2366 | -0.06896 0.(Nucleic acid sequences are tightly type cast, and can contain any IUPAC code \(ACGTUM RSVWYHKDBN\))ashow |
|---|
| 2367 | 296 90 gm |
|---|
| 2368 | 0.00411 0. 32 0.00041 0.(as well as two alignment gap characters \('~' and '-'\). Some keys are remapped to fit IUPAC codes. For)awidthshow |
|---|
| 2369 | 307 90 gm |
|---|
| 2370 | 0.00274 0. 32 0.00027 0.(example, 'X' is mapped to 'N'. All nonstandard characters get mapped to the alignment gap '-'. Upper and)awidthshow |
|---|
| 2371 | 318 90 gm |
|---|
| 2372 | -0.06726 0.(lower case are both supported, and the T/U characters are mapped based on whether you are working with)ashow |
|---|
| 2373 | 329 90 gm |
|---|
| 2374 | -0.01962 0.(DNA or RNA. The color coding for DNA and RNA is identical. The color for ambiguous characters, and)ashow |
|---|
| 2375 | 340 90 gm |
|---|
| 2376 | 0.16555 0. 32 0.01655 0.(for alignment gaps is grey.)awidthshow |
|---|
| 2377 | 362 90 gm |
|---|
| 2378 | 12 fz |
|---|
| 2379 | 2 F /|______Times-Roman fnt |
|---|
| 2380 | -0.20167 0.(Amino Acid Sequence)ashow |
|---|
| 2381 | 385 90 gm |
|---|
| 2382 | 10 fz |
|---|
| 2383 | 2 F /|______Times-Roman fnt |
|---|
| 2384 | -0.04162 0.(Amino acid sequences are loosely type cast, and can contain any valid ASCII character. The results of)ashow |
|---|
| 2385 | 396 90 gm |
|---|
| 2386 | -0.09436 0.(analysis on nonstandard characters is not guaranteed. The color for nonstandard amino acid characters, and for)ashow |
|---|
| 2387 | 407 90 gm |
|---|
| 2388 | 0.24002 0. 32 0.02400 0.(alignment gaps is grey.)awidthshow |
|---|
| 2389 | 429 90 gm |
|---|
| 2390 | 12 fz |
|---|
| 2391 | 2 F /|______Times-Roman fnt |
|---|
| 2392 | -0.16378 0.(Text Sequence)ashow |
|---|
| 2393 | 452 90 gm |
|---|
| 2394 | 10 fz |
|---|
| 2395 | 2 F /|______Times-Roman fnt |
|---|
| 2396 | -0.03298 0.(Any valid ASCII printable character can be entered into a text sequence. Care should be taken with using)ashow |
|---|
| 2397 | 463 90 gm |
|---|
| 2398 | -0.00344 0.(space characters, as these will only be saved properly in Genbank format, and not in flat file format. The)ashow |
|---|
| 2399 | 474 90 gm |
|---|
| 2400 | -0.04928 0.(characters @#% and " should be avoided as well, as these can confuse the reading of flat files if saved in that)ashow |
|---|
| 2401 | 485 90 gm |
|---|
| 2402 | -0.02505 0.(format.)ashow |
|---|
| 2403 | 507 90 gm |
|---|
| 2404 | 12 fz |
|---|
| 2405 | 2 F /|______Times-Roman fnt |
|---|
| 2406 | -0.13627 0.(Mask Sequence)ashow |
|---|
| 2407 | 530 90 gm |
|---|
| 2408 | 10 fz |
|---|
| 2409 | 2 F /|______Times-Roman fnt |
|---|
| 2410 | -0.03303 0.(Mask sequence is identical to text sequence with the following exceptions. Mask sequence can have the)ashow |
|---|
| 2411 | 541 90 gm |
|---|
| 2412 | 0.06149 0. 32 0.00614 0.(ability \(function dependent\) of masking out positions in an alignment for analysis. If a mask sequence is)awidthshow |
|---|
| 2413 | 552 90 gm |
|---|
| 2414 | 0.01480 0. 32 0.00148 0.(selected along with some other sequence\(s\) for an analysis function that permits masking, then all columns)awidthshow |
|---|
| 2415 | 563 90 gm |
|---|
| 2416 | 0.06927 0. 32 0.00692 0.(that contain a '0' in the mask sequence will be ignored by the function. The mask itself would not be passed)awidthshow |
|---|
| 2417 | 574 90 gm |
|---|
| 2418 | 0.22354 0. 32 0.02235 0.(to the analysis function either. Some functions allow masking, some do not. Refer to the instruction page)awidthshow |
|---|
| 2419 | 585 90 gm |
|---|
| 2420 | -0.00167 0.(for each function to see whether or not it supports sequence masking.)ashow |
|---|
| 2421 | 607 90 gm |
|---|
| 2422 | 12 fz |
|---|
| 2423 | 2 F /|______Times-Roman fnt |
|---|
| 2424 | -0.06585 0.(Color Masks)ashow |
|---|
| 2425 | 630 90 gm |
|---|
| 2426 | 10 fz |
|---|
| 2427 | 2 F /|______Times-Roman fnt |
|---|
| 2428 | 0.01022 0. 32 0.00102 0.(Color masks give color to a sequence on a position by position basis. Individual sequences can have color)awidthshow |
|---|
| 2429 | 641 90 gm |
|---|
| 2430 | -0.01266 0.(masks attached to them, or one color mask can be used for an entire alignment. Color masks are generated)ashow |
|---|
| 2431 | 652 90 gm |
|---|
| 2432 | -0.00192 0.(externally by some analysis functions, and are then passed back to the GDE. The file format for a colormask)ashow |
|---|
| 2433 | 663 90 gm |
|---|
| 2434 | -0.07350 0.(is described in Appendix A.)ashow |
|---|
| 2435 | 699 90 gm |
|---|
| 2436 | 14 fz |
|---|
| 2437 | 2 F /|______Times-Roman fnt |
|---|
| 2438 | 0.15777 0. 32 0.01577 0.(Menu Functions: File menu)awidthshow |
|---|
| 2439 | F T cp |
|---|
| 2440 | %%Page: ? 9 |
|---|
| 2441 | op |
|---|
| 2442 | 31 30 xl |
|---|
| 2443 | 1 1 pen |
|---|
| 2444 | 753 90 gm |
|---|
| 2445 | (nc 31 30 761 582 6 rc)kp |
|---|
| 2446 | 1 setTxMode |
|---|
| 2447 | 0 fs |
|---|
| 2448 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 2449 | 7 fz |
|---|
| 2450 | 2 F /|______Times-Roman fnt |
|---|
| 2451 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 2452 | 753 303 gm |
|---|
| 2453 | 12 fz |
|---|
| 2454 | 2 F /|______Times-Roman fnt |
|---|
| 2455 | (9)show |
|---|
| 2456 | 81 90 gm |
|---|
| 2457 | 10 fz |
|---|
| 2458 | 2 F /|______Times-Roman fnt |
|---|
| 2459 | -0.00126 0.(The GDE has several built-in menu functions under the File and Edit menus. These functions are unique in)ashow |
|---|
| 2460 | 92 90 gm |
|---|
| 2461 | -0.02758 0.(that they are part of the primary display editor, and are not described in the .GDEmenus file.)ashow |
|---|
| 2462 | 115 90 gm |
|---|
| 2463 | 12 fz |
|---|
| 2464 | 2 F /|______Times-Roman fnt |
|---|
| 2465 | 0.33511 0.(Open...)ashow |
|---|
| 2466 | 127 90 gm |
|---|
| 2467 | 10 fz |
|---|
| 2468 | 2 F /|______Times-Roman fnt |
|---|
| 2469 | 0.19515 0. 32 0.01951 0.(Selecting this will bring up the open file dialog box. Users can scroll through a list of files in the current)awidthshow |
|---|
| 2470 | 138 90 gm |
|---|
| 2471 | -0.07145 0.(directory, move up and down the directory tree, and open any individual data file. The sequence data in that)ashow |
|---|
| 2472 | 149 90 gm |
|---|
| 2473 | -0.02137 0.(file is loaded into the current editing window below any existing sequences. The open command will open)ashow |
|---|
| 2474 | 160 90 gm |
|---|
| 2475 | -0.01487 0.(any Genbank formatted file, or a GDE flat file.)ashow |
|---|
| 2476 | 182 90 gm |
|---|
| 2477 | 12 fz |
|---|
| 2478 | 2 F /|______Times-Roman fnt |
|---|
| 2479 | 1.41235 0. 32 0.14123 0.(Save as...)awidthshow |
|---|
| 2480 | 194 90 gm |
|---|
| 2481 | 10 fz |
|---|
| 2482 | 2 F /|______Times-Roman fnt |
|---|
| 2483 | 0.07537 0. 32 0.00753 0.(This function will save the entire alignment to a specified file in either Genbank or flat file format. The file)awidthshow |
|---|
| 2484 | 205 90 gm |
|---|
| 2485 | -0.00964 0.(will be saved in the local directory unless a relative or absolute path is specified.)ashow |
|---|
| 2486 | 227 90 gm |
|---|
| 2487 | 12 fz |
|---|
| 2488 | 2 F /|______Times-Roman fnt |
|---|
| 2489 | 0.19628 0.(Properties...)ashow |
|---|
| 2490 | 239 90 gm |
|---|
| 2491 | 10 fz |
|---|
| 2492 | 2 F /|______Times-Roman fnt |
|---|
| 2493 | 0.02334 0. 32 0.00233 0.(Properties controls the display settings. Those settings include character size, color type, and insert)awidthshow |
|---|
| 2494 | 250 90 gm |
|---|
| 2495 | -0.07415 0.(direction. The screen can also be inverted, vertical scroll lock and keyboard clicks \(tactile feedback\) can be)ashow |
|---|
| 2496 | 261 90 gm |
|---|
| 2497 | 0.11657 0. 32 0.01165 0.(turned on or off. Vertical scrollbar lock will cause all split views to scroll together in the vertical)awidthshow |
|---|
| 2498 | 272 90 gm |
|---|
| 2499 | -0.11550 0.(direction.)ashow |
|---|
| 2500 | 0 0 gm |
|---|
| 2501 | (nc 274 234 409 370 6 rc)kp |
|---|
| 2502 | 64 gr |
|---|
| 2503 | 275 235 408 369 1 rc |
|---|
| 2504 | T 134 33.87997 235 275 40 305 77 T 1 db |
|---|
| 2505 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 2506 | 00000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
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| 2586 | T 134 33 235 308.86840 40 305 76 T 1 db |
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|---|
| 2830 | (nc 31 30 761 582 6 rc)kp |
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| 2831 | 1 setTxMode |
|---|
| 2832 | 12 fz |
|---|
| 2833 | 2 F /|______Times-Roman fnt |
|---|
| 2834 | 0.15495 0.(Protections...)ashow |
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| 2835 | 463 90 gm |
|---|
| 2836 | 10 fz |
|---|
| 2837 | 2 F /|______Times-Roman fnt |
|---|
| 2838 | -0.01272 0.(This will display, and then set the default protections for all selected sequences. If two or more of the)ashow |
|---|
| 2839 | 474 90 gm |
|---|
| 2840 | -0.02812 0.(sequences differ in their current protection settings, a warning message will appear in the protection dialog)ashow |
|---|
| 2841 | 485 90 gm |
|---|
| 2842 | -0.00859 0.(box. The protections currently available are alignment gap protection, ambiguous character protection,)ashow |
|---|
| 2843 | 496 90 gm |
|---|
| 2844 | -0.02893 0.(unambiguous character protection, and translation protection.)ashow |
|---|
| 2845 | 0 0 gm |
|---|
| 2846 | (nc 498 270 578 352 6 rc)kp |
|---|
| 2847 | 64 gr |
|---|
| 2848 | 499 271 577 351 1 rc |
|---|
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| 3526 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3527 | T 255 11 163 227.87997 74 579 25 T 1 db |
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| 3528 | C40400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3529 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3530 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3536 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3555 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3556 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3557 | T 255 12 163 238.92306 74 579 26 T 1 db |
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| 3560 | C40000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201C006000 |
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| 3579 | C000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000 |
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| 3580 | C000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000 |
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| 3581 | C000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000 |
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| 3582 | FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE000 |
|---|
| 3583 | FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFE000 |
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| 3584 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
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| 3585 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
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| 3586 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
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| 3587 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 3588 | 285 90 gm |
|---|
| 3589 | (nc 31 30 761 582 6 rc)kp |
|---|
| 3590 | 1 setTxMode |
|---|
| 3591 | 14 fz |
|---|
| 3592 | 2 F /|______Times-Roman fnt |
|---|
| 3593 | 0.53985 0. 32 0.05398 0.( Edit menu)awidthshow |
|---|
| 3594 | 308 90 gm |
|---|
| 3595 | 12 fz |
|---|
| 3596 | 2 F /|______Times-Roman fnt |
|---|
| 3597 | -0.29429 0.(Select All)ashow |
|---|
| 3598 | 320 90 gm |
|---|
| 3599 | 10 fz |
|---|
| 3600 | 2 F /|______Times-Roman fnt |
|---|
| 3601 | -0.03724 0.(Selects all sequences. This is helpful when you have several dozen sequences.)ashow |
|---|
| 3602 | 342 90 gm |
|---|
| 3603 | 12 fz |
|---|
| 3604 | 2 F /|______Times-Roman fnt |
|---|
| 3605 | 0.19332 0. 32 0.01933 0.(Select by name...)awidthshow |
|---|
| 3606 | 354 90 gm |
|---|
| 3607 | 10 fz |
|---|
| 3608 | 2 F /|______Times-Roman fnt |
|---|
| 3609 | -0.02021 0.(Select all sequences containing a given string in their short names field. No wild cards are allowed, and only)ashow |
|---|
| 3610 | 365 90 gm |
|---|
| 3611 | -0.01213 0.(selecting is allowed, not de-selecting. The search is started when the Return key is pressed, and multiple)ashow |
|---|
| 3612 | 376 90 gm |
|---|
| 3613 | -0.06175 0.(searches can be accumulated. Press Done when finished.)ashow |
|---|
| 3614 | 398 90 gm |
|---|
| 3615 | 12 fz |
|---|
| 3616 | 2 F /|______Times-Roman fnt |
|---|
| 3617 | -0.08575 0.(Cut/Copy/Paste sequences)ashow |
|---|
| 3618 | 410 90 gm |
|---|
| 3619 | 10 fz |
|---|
| 3620 | 2 F /|______Times-Roman fnt |
|---|
| 3621 | -0.05426 0.(Cut copy and paste are primarily useful for reordering sequences, and for making duplicate copies of a given)ashow |
|---|
| 3622 | 421 90 gm |
|---|
| 3623 | 0.07507 0. 32 0.00750 0.(sequence. They do not pass information to other programs. This capability will be implemented in a later)awidthshow |
|---|
| 3624 | 432 90 gm |
|---|
| 3625 | -0.04278 0.(release. Cut and copy will place the selected sequences on an internal clipboard. They can then be pasted)ashow |
|---|
| 3626 | 443 90 gm |
|---|
| 3627 | -0.06423 0.(back into the top of editing window \(default\) or under the last selected sequence.)ashow |
|---|
| 3628 | 465 90 gm |
|---|
| 3629 | 12 fz |
|---|
| 3630 | 2 F /|______Times-Roman fnt |
|---|
| 3631 | 0.02943 0.(Group/Ungroup)ashow |
|---|
| 3632 | 477 90 gm |
|---|
| 3633 | 10 fz |
|---|
| 3634 | 2 F /|______Times-Roman fnt |
|---|
| 3635 | -0.00544 0.(Assign a group number to the selected sequences. Edit operations in any one sequence within the group will)ashow |
|---|
| 3636 | 488 90 gm |
|---|
| 3637 | 0.00320 0. 32 0.00032 0.(be propagated to all within the group. Sequence protections from one group are also imposed upon all other)awidthshow |
|---|
| 3638 | 499 90 gm |
|---|
| 3639 | 0.07339 0. 32 0.00733 0.(sequence in the given group. If a given operation is illegal in one sequence in a group \(i.e. alignment)awidthshow |
|---|
| 3640 | 510 90 gm |
|---|
| 3641 | 0.06820 0. 32 0.00682 0.(modification\) then it will not work in any of the sequences in that group. Ungroup will remove the selected)awidthshow |
|---|
| 3642 | 521 90 gm |
|---|
| 3643 | -0.05171 0.(sequences from a given group.)ashow |
|---|
| 3644 | 543 90 gm |
|---|
| 3645 | 12 fz |
|---|
| 3646 | 2 F /|______Times-Roman fnt |
|---|
| 3647 | (Compress)show |
|---|
| 3648 | 555 90 gm |
|---|
| 3649 | 10 fz |
|---|
| 3650 | 2 F /|______Times-Roman fnt |
|---|
| 3651 | -0.01747 0.(Compress will remove gap characters from the selected sequences. The user has the option of removing all)ashow |
|---|
| 3652 | 566 90 gm |
|---|
| 3653 | 0.34576 0. 32 0.03457 0.(gaps, or simply all columns containing nothing but gaps. This is useful for minimizing the length of a)awidthshow |
|---|
| 3654 | 577 90 gm |
|---|
| 3655 | 0.05169 0.(subalignment.)ashow |
|---|
| 3656 | 599 90 gm |
|---|
| 3657 | 12 fz |
|---|
| 3658 | 2 F /|______Times-Roman fnt |
|---|
| 3659 | -0.10784 0.(Reverse Sequence)ashow |
|---|
| 3660 | 611 90 gm |
|---|
| 3661 | 10 fz |
|---|
| 3662 | 2 F /|______Times-Roman fnt |
|---|
| 3663 | -0.06991 0.(Reverses the selected sequences. Alignment gaps are reversed as well. The selected sequences will remain)ashow |
|---|
| 3664 | 622 90 gm |
|---|
| 3665 | -0.13101 0.(aligned after reversal.)ashow |
|---|
| 3666 | 647 90 gm |
|---|
| 3667 | 14 fz |
|---|
| 3668 | 2 F /|______Times-Roman fnt |
|---|
| 3669 | 0.04180 0. 32 0.00418 0.( DNA/RNA menu)awidthshow |
|---|
| 3670 | 671 90 gm |
|---|
| 3671 | 12 fz |
|---|
| 3672 | 2 F /|______Times-Roman fnt |
|---|
| 3673 | -0.16490 0.(Complement Sequence)ashow |
|---|
| 3674 | 683 90 gm |
|---|
| 3675 | 10 fz |
|---|
| 3676 | 2 F /|______Times-Roman fnt |
|---|
| 3677 | 0.20431 0. 32 0.02043 0.(Converts DNA/RNA into its complement strand \(keeping full IUPAC ambiguity\). This function has no)awidthshow |
|---|
| 3678 | 694 90 gm |
|---|
| 3679 | -0.01968 0.(effect on text, protein, or mask sequence. Note that this function does not produce the reverse strand of DNA)ashow |
|---|
| 3680 | 705 90 gm |
|---|
| 3681 | -0.02952 0.(but merely converts A<->T and G<->C. If the reverse strand is needed, remember to Complement and)ashow |
|---|
| 3682 | 716 90 gm |
|---|
| 3683 | -0.09683 0.(Reverse the sequence \(Edit menu\).)ashow |
|---|
| 3684 | F T cp |
|---|
| 3685 | %%Page: ? 11 |
|---|
| 3686 | op |
|---|
| 3687 | 31 30 xl |
|---|
| 3688 | 1 1 pen |
|---|
| 3689 | 753 90 gm |
|---|
| 3690 | (nc 31 30 761 582 6 rc)kp |
|---|
| 3691 | 1 setTxMode |
|---|
| 3692 | 0 fs |
|---|
| 3693 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 3694 | 7 fz |
|---|
| 3695 | 2 F /|______Times-Roman fnt |
|---|
| 3696 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 3697 | 753 300 gm |
|---|
| 3698 | 12 fz |
|---|
| 3699 | 2 F /|______Times-Roman fnt |
|---|
| 3700 | (11)show |
|---|
| 3701 | 107 90 gm |
|---|
| 3702 | 14 fz |
|---|
| 3703 | 2 F /|______Times-Roman fnt |
|---|
| 3704 | 0.68984 0. 32 0.06898 0.(External Functions)awidthshow |
|---|
| 3705 | 130 90 gm |
|---|
| 3706 | 10 fz |
|---|
| 3707 | 2 F /|______Times-Roman fnt |
|---|
| 3708 | -0.02468 0.(See appendix C for a full description of functions supported in GDE 2.2 All external functions are described)ashow |
|---|
| 3709 | 141 90 gm |
|---|
| 3710 | 0.00610 0. 32 0.00061 0.(in the configuration file .GDEmenus. Here is a brief description of some of the basic functions included.)awidthshow |
|---|
| 3711 | 163 90 gm |
|---|
| 3712 | 12 fz |
|---|
| 3713 | 2 F /|______Times-Roman fnt |
|---|
| 3714 | -0.16563 0.(File menu)ashow |
|---|
| 3715 | 186 90 gm |
|---|
| 3716 | 10 fz |
|---|
| 3717 | 2 F /|______Times-Roman fnt |
|---|
| 3718 | -0.07015 0.(New Sequence <meta n>)ashow |
|---|
| 3719 | 186 198 gm |
|---|
| 3720 | -0.05102 0.(Create a new sequence. Prompts for sequence type, and short name.)ashow |
|---|
| 3721 | 208 90 gm |
|---|
| 3722 | -0.03674 0.(Import foreign format)ashow |
|---|
| 3723 | 219 90 gm |
|---|
| 3724 | -0.03681 0.(Export foreign format)ashow |
|---|
| 3725 | 219 198 gm |
|---|
| 3726 | -0.08541 0.(Load and save sequences using Readseq by Don Gilbert \(see Appendix C\).)ashow |
|---|
| 3727 | 241 90 gm |
|---|
| 3728 | -0.01116 0.(Save Selection)ashow |
|---|
| 3729 | 241 198 gm |
|---|
| 3730 | -0.08074 0.(Save the currently selected sequences in a specified file.)ashow |
|---|
| 3731 | 263 90 gm |
|---|
| 3732 | 0.34957 0. 32 0.03495 0.(Pretty print)awidthshow |
|---|
| 3733 | 263 198 gm |
|---|
| 3734 | -0.05415 0.(Print using the sequence formatter supplied by Readseq.)ashow |
|---|
| 3735 | 285 90 gm |
|---|
| 3736 | 0.35308 0. 32 0.03530 0.(Print Selection)awidthshow |
|---|
| 3737 | 285 198 gm |
|---|
| 3738 | 0.01174 0. 32 0.00117 0.(Print the selected sequences to the chosen printer. This function supports)awidthshow |
|---|
| 3739 | 296 198 gm |
|---|
| 3740 | 0.04150 0. 32 0.00415 0.(the Unix command enscript as well as lpr. The .GDEmenus file may need to)awidthshow |
|---|
| 3741 | 307 198 gm |
|---|
| 3742 | -0.00283 0.(be modified to add the names of local printers to the printer list.)ashow |
|---|
| 3743 | 329 90 gm |
|---|
| 3744 | 12 fz |
|---|
| 3745 | 2 F /|______Times-Roman fnt |
|---|
| 3746 | -0.20724 0.(Edit menu)ashow |
|---|
| 3747 | 352 90 gm |
|---|
| 3748 | 10 fz |
|---|
| 3749 | 2 F /|______Times-Roman fnt |
|---|
| 3750 | 0.25080 0.(sort...)ashow |
|---|
| 3751 | 352 198 gm |
|---|
| 3752 | -0.06867 0.(Sort the selected sequences by a primary and secondary key. Pass the new order)ashow |
|---|
| 3753 | 363 198 gm |
|---|
| 3754 | -0.00726 0.(to a new GDE window.)ashow |
|---|
| 3755 | 385 90 gm |
|---|
| 3756 | -0.14492 0.(Extract)ashow |
|---|
| 3757 | 385 198 gm |
|---|
| 3758 | -0.07679 0.(Extract the selected sequences into a new window.)ashow |
|---|
| 3759 | 407 90 gm |
|---|
| 3760 | 12 fz |
|---|
| 3761 | 2 F /|______Times-Roman fnt |
|---|
| 3762 | -0.24058 0.(DNA/RNA Menu)ashow |
|---|
| 3763 | 419 90 gm |
|---|
| 3764 | 10 fz |
|---|
| 3765 | 2 F /|______Times-Roman fnt |
|---|
| 3766 | -0.14962 0.(Translate)ashow |
|---|
| 3767 | 419 198 gm |
|---|
| 3768 | -0.05361 0.(Translate the selected sequences from DNA/RNA to Amino acid. The user can)ashow |
|---|
| 3769 | 430 198 gm |
|---|
| 3770 | -0.07470 0.(specify the desired reading frame, and the minimum open reading frame \(stop)ashow |
|---|
| 3771 | 441 198 gm |
|---|
| 3772 | -0.00601 0.(codon to stop codon\) to translate. The user can also choose between single)ashow |
|---|
| 3773 | 452 198 gm |
|---|
| 3774 | 0.00518 0. 32 0.00051 0.(letter code and triple letter codes. There is also an option to allow each ORF to)awidthshow |
|---|
| 3775 | 463 198 gm |
|---|
| 3776 | -0.11936 0.(to be entered as a seperate sequence.)ashow |
|---|
| 3777 | 485 90 gm |
|---|
| 3778 | 0.55633 0. 32 0.05563 0.(Dot plot)awidthshow |
|---|
| 3779 | 485 198 gm |
|---|
| 3780 | -0.02882 0.(Display a dotplot identity matrix for the selected sequence\(s\). If only one)ashow |
|---|
| 3781 | 496 198 gm |
|---|
| 3782 | (sequence is selected, then the dotplot is a self comparison. If two or more)show |
|---|
| 3783 | 507 198 gm |
|---|
| 3784 | -0.10966 0.(sequences are selected, then the first two sequences are compared.)ashow |
|---|
| 3785 | 529 90 gm |
|---|
| 3786 | 0.63247 0. 32 0.06324 0.(Clustal Align)awidthshow |
|---|
| 3787 | 529 198 gm |
|---|
| 3788 | 0.04074 0. 32 0.00407 0.(Align the selected sequences using the clustalv algorithm by Des Higgins.)awidthshow |
|---|
| 3789 | 540 198 gm |
|---|
| 3790 | -0.07983 0.(\(See Appendix C\))ashow |
|---|
| 3791 | 562 90 gm |
|---|
| 3792 | 0.29251 0. 32 0.02925 0.(Find All <meta f>)awidthshow |
|---|
| 3793 | 562 198 gm |
|---|
| 3794 | -0.04464 0.(Search and highlight the selected sequences for a given substring. A specified)ashow |
|---|
| 3795 | 573 198 gm |
|---|
| 3796 | -0.02334 0.(percent of mismatching can also be allowed.)ashow |
|---|
| 3797 | 595 90 gm |
|---|
| 3798 | 0.15136 0. 32 0.01513 0.(Variable Positions)awidthshow |
|---|
| 3799 | 595 198 gm |
|---|
| 3800 | -0.06744 0.(The selected sequences are scored column by column for conservation. The)ashow |
|---|
| 3801 | 606 198 gm |
|---|
| 3802 | 0.02929 0. 32 0.00292 0.(result is returned as a grey scale alignment color mask. This can be useful)awidthshow |
|---|
| 3803 | 617 198 gm |
|---|
| 3804 | 0.41549 0. 32 0.04154 0.(in selecting PCR primers.)awidthshow |
|---|
| 3805 | 639 90 gm |
|---|
| 3806 | -0.09349 0.(Sequence Consensus)ashow |
|---|
| 3807 | 639 198 gm |
|---|
| 3808 | -0.02246 0.(Return the consensus for the selected sequences. This can either be a majority)ashow |
|---|
| 3809 | 650 198 gm |
|---|
| 3810 | 0.17730 0. 32 0.01773 0.(consensus, or an ambiguity consensus using IUPAC coding.)awidthshow |
|---|
| 3811 | 672 90 gm |
|---|
| 3812 | -0.01284 0.(Distance Matrix )ashow |
|---|
| 3813 | 672 198 gm |
|---|
| 3814 | -0.07553 0.(Calculate a distance matrix for the selected sequences. \(See Appendix C\))ashow |
|---|
| 3815 | 694 90 gm |
|---|
| 3816 | (MFOLD)show |
|---|
| 3817 | 694 198 gm |
|---|
| 3818 | -0.01577 0.(Fold the selected sequences using MFOLD by Michael Zuker. The resulting)ashow |
|---|
| 3819 | 705 198 gm |
|---|
| 3820 | -0.08619 0.(structure is returned as a nested bracket \('[]'\) representation of the secondary)ashow |
|---|
| 3821 | 716 198 gm |
|---|
| 3822 | -0.05360 0.(structure.\(See appendix C.\))ashow |
|---|
| 3823 | F T cp |
|---|
| 3824 | %%Page: ? 12 |
|---|
| 3825 | op |
|---|
| 3826 | 31 30 xl |
|---|
| 3827 | 1 1 pen |
|---|
| 3828 | 753 90 gm |
|---|
| 3829 | (nc 31 30 761 582 6 rc)kp |
|---|
| 3830 | 1 setTxMode |
|---|
| 3831 | 0 fs |
|---|
| 3832 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 3833 | 7 fz |
|---|
| 3834 | 2 F /|______Times-Roman fnt |
|---|
| 3835 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 3836 | 753 300 gm |
|---|
| 3837 | 12 fz |
|---|
| 3838 | 2 F /|______Times-Roman fnt |
|---|
| 3839 | (12)show |
|---|
| 3840 | 92 90 gm |
|---|
| 3841 | 10 fz |
|---|
| 3842 | 2 F /|______Times-Roman fnt |
|---|
| 3843 | -0.11444 0.(Draw Secondary Struct)ashow |
|---|
| 3844 | 92 198 gm |
|---|
| 3845 | -0.07971 0.(Draw the selected sequence using the proposed secondary structure. Both the)ashow |
|---|
| 3846 | 103 198 gm |
|---|
| 3847 | -0.11421 0.(secondary structure prediction, and the RNA sequence should be selected before)ashow |
|---|
| 3848 | 114 198 gm |
|---|
| 3849 | 0.08117 0. 32 0.00811 0.(calling this function. The drawing program is LoopTool. \(See Appendix C\))awidthshow |
|---|
| 3850 | 136 90 gm |
|---|
| 3851 | 0.39718 0. 32 0.03971 0.(Highlight Helix)awidthshow |
|---|
| 3852 | 136 198 gm |
|---|
| 3853 | -0.02478 0.(Show all violations to a proposed RNA secondary structure. The secondary)ashow |
|---|
| 3854 | 147 198 gm |
|---|
| 3855 | -0.06376 0.(structure represented must be selected, as well as the aligned sequences to be)ashow |
|---|
| 3856 | 158 198 gm |
|---|
| 3857 | -0.06709 0.(tested. The selected sequences will then be colored according to whether or not)ashow |
|---|
| 3858 | 169 198 gm |
|---|
| 3859 | -0.02209 0.(they support the proposed 2)ashow |
|---|
| 3860 | currentfont SwToSym |
|---|
| 3861 | -0.02209 0.(\260)ashow |
|---|
| 3862 | setfont |
|---|
| 3863 | -0.02209 0.( structure. Standard Watson/Crick paring will be)ashow |
|---|
| 3864 | 180 198 gm |
|---|
| 3865 | (colored dark blue, G-U paring will be colored light blue, mismatches will be)show |
|---|
| 3866 | 191 198 gm |
|---|
| 3867 | -0.03656 0.(colored gold, and pairng to gaps will be red.)ashow |
|---|
| 3868 | 213 90 gm |
|---|
| 3869 | -0.09217 0.(Blastn/BlastX)ashow |
|---|
| 3870 | 213 198 gm |
|---|
| 3871 | -0.06690 0.(Search the selected sequence \(select only one\) against a given database with the)ashow |
|---|
| 3872 | 224 198 gm |
|---|
| 3873 | 0.21972 0. 32 0.02197 0.(BLAST searching tool written by Altschul, Gish, Miller, Myers, and Lipman.)awidthshow |
|---|
| 3874 | 235 198 gm |
|---|
| 3875 | -0.05590 0.(Blastn searches DNA against DNA databases, blastx searches DNA against AA)ashow |
|---|
| 3876 | 246 198 gm |
|---|
| 3877 | -0.04621 0.(databases by translating the sequence in all six reading frames. \(See Appendix C\))ashow |
|---|
| 3878 | 268 90 gm |
|---|
| 3879 | 0.02897 0.(FastA)ashow |
|---|
| 3880 | 268 198 gm |
|---|
| 3881 | -0.06472 0.(Search the selected sequence \(select only one\) against a given database using the)ashow |
|---|
| 3882 | 279 198 gm |
|---|
| 3883 | 0.02075 0. 32 0.00207 0.(FASTA similarity search program written by Pearson and Lipman. \(See)awidthshow |
|---|
| 3884 | 290 198 gm |
|---|
| 3885 | -0.09335 0.(Appendix C\))ashow |
|---|
| 3886 | 312 90 gm |
|---|
| 3887 | 12 fz |
|---|
| 3888 | 2 F /|______Times-Roman fnt |
|---|
| 3889 | -0.15008 0.(Protein Menu)ashow |
|---|
| 3890 | 346 90 gm |
|---|
| 3891 | 10 fz |
|---|
| 3892 | 2 F /|______Times-Roman fnt |
|---|
| 3893 | 0.63247 0. 32 0.06324 0.(Clustal Align)awidthshow |
|---|
| 3894 | 346 198 gm |
|---|
| 3895 | -0.02090 0.(Align the selected amino acid sequences using the clustal algorithm. \(See)ashow |
|---|
| 3896 | 357 198 gm |
|---|
| 3897 | -0.09335 0.(Appendix C\))ashow |
|---|
| 3898 | 379 90 gm |
|---|
| 3899 | 0.21408 0. 32 0.02140 0.(Blastp, Tblastn, Blast3)awidthshow |
|---|
| 3900 | 379 198 gm |
|---|
| 3901 | -0.06690 0.(Search the selected sequence \(select only one\) against a given database with the)ashow |
|---|
| 3902 | 390 198 gm |
|---|
| 3903 | 0.21972 0. 32 0.02197 0.(BLAST searching tool written by Altschul, Gish, Miller, Myers, and Lipman.)awidthshow |
|---|
| 3904 | 401 198 gm |
|---|
| 3905 | -0.04742 0.(Blastp searches AA against AA databases, tblastn searches AA against DNA)ashow |
|---|
| 3906 | 412 198 gm |
|---|
| 3907 | -0.03672 0.(databases by translating the database in all six reading frames. Blast3 finds)ashow |
|---|
| 3908 | 423 198 gm |
|---|
| 3909 | 0.00274 0. 32 0.00027 0.(three way alignments that are could not be found with only pairwise comparisons.)awidthshow |
|---|
| 3910 | 434 198 gm |
|---|
| 3911 | -0.07983 0.(\(See Appendix C\))ashow |
|---|
| 3912 | 456 90 gm |
|---|
| 3913 | 12 fz |
|---|
| 3914 | 2 F /|______Times-Roman fnt |
|---|
| 3915 | -0.20037 0.(Sequence Management Menu)ashow |
|---|
| 3916 | 479 90 gm |
|---|
| 3917 | 10 fz |
|---|
| 3918 | 2 F /|______Times-Roman fnt |
|---|
| 3919 | 0.07385 0. 32 0.00738 0.(Assemble contigs)awidthshow |
|---|
| 3920 | 479 198 gm |
|---|
| 3921 | 0.02410 0. 32 0.00241 0.(Assemble the selected sequences into contigs using the program CAP \(Contig)awidthshow |
|---|
| 3922 | 490 198 gm |
|---|
| 3923 | -0.03036 0.(Assemble Program\) written by Xiaoqiu Huang. The resulting sequences are)ashow |
|---|
| 3924 | 501 198 gm |
|---|
| 3925 | -0.03370 0.(returned to the current GDE window, and they are grouped into contigs. The)ashow |
|---|
| 3926 | 512 198 gm |
|---|
| 3927 | -0.05517 0.(user can then sort the sequences by group, and offset to produce an ordered list of)ashow |
|---|
| 3928 | 523 198 gm |
|---|
| 3929 | 0.02960 0. 32 0.00296 0.(the contigs. \(See Appendix C\))awidthshow |
|---|
| 3930 | 545 90 gm |
|---|
| 3931 | -0.02136 0.(Strategy view)ashow |
|---|
| 3932 | 545 198 gm |
|---|
| 3933 | 0.03570 0. 32 0.00357 0.(Pass out the selected sequences to StratView. This program will display contigs)awidthshow |
|---|
| 3934 | 556 198 gm |
|---|
| 3935 | -0.01431 0.(in a greatly reduced line drawing. This is very useful for large contigs.)ashow |
|---|
| 3936 | 578 90 gm |
|---|
| 3937 | 0.32684 0. 32 0.03268 0.(Restriction sites)awidthshow |
|---|
| 3938 | 578 198 gm |
|---|
| 3939 | -0.06761 0.(Search the selected sequences for the restriction enzymes specified in the given)ashow |
|---|
| 3940 | 589 198 gm |
|---|
| 3941 | -0.01243 0.(enzyme file. The restriction sites are then colored by enzyme.)ashow |
|---|
| 3942 | 611 90 gm |
|---|
| 3943 | 12 fz |
|---|
| 3944 | 2 F /|______Times-Roman fnt |
|---|
| 3945 | -0.07624 0.(Phylogeny menu)ashow |
|---|
| 3946 | 635 90 gm |
|---|
| 3947 | 10 fz |
|---|
| 3948 | 2 F /|______Times-Roman fnt |
|---|
| 3949 | -0.07130 0.(DeSoete Tree fit)ashow |
|---|
| 3950 | 635 198 gm |
|---|
| 3951 | -0.00927 0.(Calculate a phylogenetic tree using a least squares fitting algorithm on a distance)ashow |
|---|
| 3952 | 646 198 gm |
|---|
| 3953 | -0.06059 0.(matrix calculated from the selected sequences. The results can then be passed on)ashow |
|---|
| 3954 | 657 198 gm |
|---|
| 3955 | -0.01338 0.(to treetool for display and manipulation. \(See Appendix C\))ashow |
|---|
| 3956 | 679 90 gm |
|---|
| 3957 | 0.99151 0. 32 0.09915 0.(Phylip 3.5)awidthshow |
|---|
| 3958 | 679 198 gm |
|---|
| 3959 | 0.10299 0. 32 0.01029 0.(Pass the selected data to on of the treeing programs in Phylip, written by)awidthshow |
|---|
| 3960 | 690 198 gm |
|---|
| 3961 | 0.16418 0. 32 0.01641 0.(Joe Felsenstein. The chosen phylip program is started in it's own window,)awidthshow |
|---|
| 3962 | 701 198 gm |
|---|
| 3963 | -0.12712 0.(with the selected sequences already loaded. \(See Appendix C\))ashow |
|---|
| 3964 | F T cp |
|---|
| 3965 | %%Page: ? 13 |
|---|
| 3966 | op |
|---|
| 3967 | 31 30 xl |
|---|
| 3968 | 1 1 pen |
|---|
| 3969 | 753 90 gm |
|---|
| 3970 | (nc 31 30 761 582 6 rc)kp |
|---|
| 3971 | 1 setTxMode |
|---|
| 3972 | 0 fs |
|---|
| 3973 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 3974 | 7 fz |
|---|
| 3975 | 2 F /|______Times-Roman fnt |
|---|
| 3976 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 3977 | 753 300 gm |
|---|
| 3978 | 12 fz |
|---|
| 3979 | 2 F /|______Times-Roman fnt |
|---|
| 3980 | (13)show |
|---|
| 3981 | 106 90 gm |
|---|
| 3982 | 14 fz |
|---|
| 3983 | 2 F /|______Times-Roman fnt |
|---|
| 3984 | 0.70434 0. 32 0.07043 0.(Citation of work)awidthshow |
|---|
| 3985 | 129 90 gm |
|---|
| 3986 | 10 fz |
|---|
| 3987 | 2 F /|______Times-Roman fnt |
|---|
| 3988 | 0.03417 0. 32 0.00341 0.(We ask that any published work using any of the external functions in GDE cite the appropriate authors.)awidthshow |
|---|
| 3989 | 140 90 gm |
|---|
| 3990 | -0.08705 0.(Please see Appendix C for references.)ashow |
|---|
| 3991 | 187 90 gm |
|---|
| 3992 | 14 fz |
|---|
| 3993 | 2 F /|______Times-Roman fnt |
|---|
| 3994 | 0.42251 0. 32 0.04225 0.(Bug reports/extensions)awidthshow |
|---|
| 3995 | 210 90 gm |
|---|
| 3996 | 10 fz |
|---|
| 3997 | 2 F /|______Times-Roman fnt |
|---|
| 3998 | -0.04759 0.(Any bug reports, request for enhancement, and useful extensions to the GDE should be forwarded by)ashow |
|---|
| 3999 | 221 90 gm |
|---|
| 4000 | 0.06652 0. 32 0.00665 0.(electronic mail to:)awidthshow |
|---|
| 4001 | 243 90 gm |
|---|
| 4002 | 0.05484 0.(smith@bioimage.millipore.com)ashow |
|---|
| 4003 | 265 90 gm |
|---|
| 4004 | -0.01402 0.(Please include as much detail as possible in bug reports so that the bug can be reproduced.)ashow |
|---|
| 4005 | 276 90 gm |
|---|
| 4006 | -0.16358 0.(Correspondence should be addressed to:)ashow |
|---|
| 4007 | 298 90 gm |
|---|
| 4008 | 0.66253 0. 32 0.06625 0.(Steven Smith)awidthshow |
|---|
| 4009 | 309 90 gm |
|---|
| 4010 | 0.35827 0. 32 0.03582 0.(Millipore Imaging Systems)awidthshow |
|---|
| 4011 | 320 90 gm |
|---|
| 4012 | 0.17898 0. 32 0.01789 0.(777 E. Eisenhower Pkwy)awidthshow |
|---|
| 4013 | 331 90 gm |
|---|
| 4014 | 0.05920 0. 32 0.00592 0.(Ann Arbor, MI)awidthshow |
|---|
| 4015 | 331 162 gm |
|---|
| 4016 | (48108)show |
|---|
| 4017 | 433 90 gm |
|---|
| 4018 | 14 fz |
|---|
| 4019 | 2 F /|______Times-Roman fnt |
|---|
| 4020 | -0.06921 0.(Acknowledgments)ashow |
|---|
| 4021 | 456 90 gm |
|---|
| 4022 | 10 fz |
|---|
| 4023 | 2 F /|______Times-Roman fnt |
|---|
| 4024 | -0.01979 0.(I would like to thank the following people for their input and assistance and code used in the development of)ashow |
|---|
| 4025 | 467 90 gm |
|---|
| 4026 | (the GDE:)show |
|---|
| 4027 | 489 90 gm |
|---|
| 4028 | 0.10726 0. 32 0.01072 0.(Carl Woese, Gary Olsen and Mike Maciukenas at University of Illinois Dept of Microbiology, Ross)awidthshow |
|---|
| 4029 | 500 90 gm |
|---|
| 4030 | 0.00534 0. 32 0.00053 0.(Overbeek at Argonne National Laboratories,Walter Gilbert, Patrick Gillevet, Chunwei Wang, Susan Russo)awidthshow |
|---|
| 4031 | 511 90 gm |
|---|
| 4032 | -0.01847 0.(and Erik Bunce at the Harvard Genome Laboratory. I would also like to personally thank the following)ashow |
|---|
| 4033 | 522 90 gm |
|---|
| 4034 | 0.00961 0. 32 0.00096 0.(people for their permission to include their software with this release of GDE.)awidthshow |
|---|
| 4035 | 544 90 gm |
|---|
| 4036 | 0.60729 0. 32 0.06072 0.(Tim Littlejohn)awidthshow |
|---|
| 4037 | 555 90 gm |
|---|
| 4038 | 0.31784 0. 32 0.03178 0.(Scott Ferguson)awidthshow |
|---|
| 4039 | 566 90 gm |
|---|
| 4040 | -0.02497 0.(Brian Fristensky)ashow |
|---|
| 4041 | 577 90 gm |
|---|
| 4042 | 0.14419 0. 32 0.01441 0.(Des Higgins)awidthshow |
|---|
| 4043 | 588 90 gm |
|---|
| 4044 | -0.04928 0.(David Lipman and the group at NCBI)ashow |
|---|
| 4045 | 599 90 gm |
|---|
| 4046 | 0.03280 0. 32 0.00328 0.(William Pearson)awidthshow |
|---|
| 4047 | 610 90 gm |
|---|
| 4048 | (Don Gilbert)show |
|---|
| 4049 | 621 90 gm |
|---|
| 4050 | -0.11433 0.(Xiaoqui Huang)ashow |
|---|
| 4051 | 632 90 gm |
|---|
| 4052 | 0.07690 0. 32 0.00769 0.(Joe Felsenstein)awidthshow |
|---|
| 4053 | 643 90 gm |
|---|
| 4054 | -0.09466 0.(Michael Zuker)ashow |
|---|
| 4055 | 654 90 gm |
|---|
| 4056 | -0.13116 0.(Geert DeSoete)ashow |
|---|
| 4057 | 687 90 gm |
|---|
| 4058 | 0.02197 0. 32 0.00219 0.(Many thanks to all the people who have directly and indirectly helped with the ongoing support of GDE. It)awidthshow |
|---|
| 4059 | 698 90 gm |
|---|
| 4060 | 0.09597 0. 32 0.00959 0.(is only by the generosity of these people that GDE has been successful.)awidthshow |
|---|
| 4061 | F T cp |
|---|
| 4062 | %%Page: ? 14 |
|---|
| 4063 | op |
|---|
| 4064 | 31 30 xl |
|---|
| 4065 | 1 1 pen |
|---|
| 4066 | 753 90 gm |
|---|
| 4067 | (nc 31 30 761 582 6 rc)kp |
|---|
| 4068 | 1 setTxMode |
|---|
| 4069 | 0 fs |
|---|
| 4070 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4071 | 7 fz |
|---|
| 4072 | 2 F /|______Times-Roman fnt |
|---|
| 4073 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 4074 | 753 300 gm |
|---|
| 4075 | 12 fz |
|---|
| 4076 | 2 F /|______Times-Roman fnt |
|---|
| 4077 | (14)show |
|---|
| 4078 | 95 90 gm |
|---|
| 4079 | 14 fz |
|---|
| 4080 | 2 F /|______Times-Roman fnt |
|---|
| 4081 | 0.57128 0. 32 0.05712 0.(Appendix A, File Formats)awidthshow |
|---|
| 4082 | 122 90 gm |
|---|
| 4083 | 10 fz |
|---|
| 4084 | 2 F /|______Times-Roman fnt |
|---|
| 4085 | -0.03565 0.(The currently supported file formats include GDE data files, Genbank formatted files \(with type extensions\),)ashow |
|---|
| 4086 | 133 90 gm |
|---|
| 4087 | -0.01033 0.(a generic flat file format, and a color mask file.)ashow |
|---|
| 4088 | 155 90 gm |
|---|
| 4089 | 12 fz |
|---|
| 4090 | 2 F /|______Times-Roman fnt |
|---|
| 4091 | -0.18190 0.(GDE format)ashow |
|---|
| 4092 | 167 90 gm |
|---|
| 4093 | 10 fz |
|---|
| 4094 | 2 F /|______Times-Roman fnt |
|---|
| 4095 | -0.02778 0.(GDE format is a tagged field format used for storing all available information about a sequence. The format)ashow |
|---|
| 4096 | 178 90 gm |
|---|
| 4097 | -0.03959 0.(matches very closely the GDE internal structures for sequence data. The format consists of text records)ashow |
|---|
| 4098 | 189 90 gm |
|---|
| 4099 | -0.08013 0.(starting and ending with braces \('{}'\). Between the open and close braces are several tagged field lines)ashow |
|---|
| 4100 | 200 90 gm |
|---|
| 4101 | -0.04377 0.(specifying different pieces of information about a given sequence. The tag values can be wrapped with)ashow |
|---|
| 4102 | 211 90 gm |
|---|
| 4103 | -0.05966 0.(double quote characters \('""'\) as needed. If quotes are not used, the first whitespace delimited string is taken)ashow |
|---|
| 4104 | 222 90 gm |
|---|
| 4105 | -0.03451 0.(as the value. The allowable fields are:)ashow |
|---|
| 4106 | 244 90 gm |
|---|
| 4107 | ({)show |
|---|
| 4108 | 255 90 gm |
|---|
| 4109 | -0.21841 0.(name)ashow |
|---|
| 4110 | 255 162 gm |
|---|
| 4111 | -0.09494 0.("Short name for sequence")ashow |
|---|
| 4112 | 266 90 gm |
|---|
| 4113 | -0.06198 0.(longname)ashow |
|---|
| 4114 | 266 162 gm |
|---|
| 4115 | -0.11402 0.("Long \(more descriptive\) name for sequence")ashow |
|---|
| 4116 | 277 90 gm |
|---|
| 4117 | -0.35173 0.(sequence-ID)ashow |
|---|
| 4118 | 277 162 gm |
|---|
| 4119 | -0.09922 0.("Unique ID number")ashow |
|---|
| 4120 | 288 90 gm |
|---|
| 4121 | -0.26521 0.(creation-date)ashow |
|---|
| 4122 | 288 162 gm |
|---|
| 4123 | 0.12008 0. 32 0.01200 0.("mm/dd/yy hh:mm:ss")awidthshow |
|---|
| 4124 | 299 90 gm |
|---|
| 4125 | -0.19244 0.(direction)ashow |
|---|
| 4126 | 299 162 gm |
|---|
| 4127 | -0.19648 0.([-1|1])ashow |
|---|
| 4128 | 310 90 gm |
|---|
| 4129 | -0.28077 0.(strandedness)ashow |
|---|
| 4130 | 310 162 gm |
|---|
| 4131 | -0.16368 0.([1|2])ashow |
|---|
| 4132 | 321 90 gm |
|---|
| 4133 | -0.07225 0.(type)ashow |
|---|
| 4134 | 321 162 gm |
|---|
| 4135 | -0.07638 0.([DNA|RNA||PROTEIN|TEXT|MASK])ashow |
|---|
| 4136 | 332 90 gm |
|---|
| 4137 | -0.15226 0.(offset)ashow |
|---|
| 4138 | 332 162 gm |
|---|
| 4139 | -0.03222 0.(\(-999999,999999\))ashow |
|---|
| 4140 | 343 90 gm |
|---|
| 4141 | -0.17175 0.(group-ID)ashow |
|---|
| 4142 | 343 162 gm |
|---|
| 4143 | -0.02587 0.(\(0,999\))ashow |
|---|
| 4144 | 354 90 gm |
|---|
| 4145 | -0.29151 0.(creator)ashow |
|---|
| 4146 | 354 162 gm |
|---|
| 4147 | -0.02342 0.("Author's name")ashow |
|---|
| 4148 | 365 90 gm |
|---|
| 4149 | -0.31198 0.(descrip)ashow |
|---|
| 4150 | 365 162 gm |
|---|
| 4151 | -0.12005 0.("Verbose description")ashow |
|---|
| 4152 | 376 90 gm |
|---|
| 4153 | -0.01441 0.(comments)ashow |
|---|
| 4154 | 376 162 gm |
|---|
| 4155 | -0.01306 0.("Lines of comments that can be fairly arbitrary)ashow |
|---|
| 4156 | 387 90 gm |
|---|
| 4157 | -0.03907 0.(text about a sequence. Return characters are allowed, but no internal)ashow |
|---|
| 4158 | 398 90 gm |
|---|
| 4159 | -0.05203 0.(double quotes or brace characters. Remember to close with a double)ashow |
|---|
| 4160 | 409 90 gm |
|---|
| 4161 | -0.25929 0.(quote")ashow |
|---|
| 4162 | 420 90 gm |
|---|
| 4163 | -0.37757 0.(sequence)ashow |
|---|
| 4164 | 420 162 gm |
|---|
| 4165 | -0.11505 0.("gctagctagctagctagctcttagctgtagtcgtagctgatgctagct)ashow |
|---|
| 4166 | 431 90 gm |
|---|
| 4167 | -0.13807 0.(gatgctagctagctagctagctgatcgatgctagctgatcgtagctgacg)ashow |
|---|
| 4168 | 442 90 gm |
|---|
| 4169 | -0.09281 0.(gactgatgctagctagctagctagctgtctagtgtcgtagtgcttattgc")ashow |
|---|
| 4170 | 453 90 gm |
|---|
| 4171 | (})show |
|---|
| 4172 | 475 90 gm |
|---|
| 4173 | -0.03117 0.(Any fields that are not specified are assumed to be the default values. Offsets can be negative as well as)ashow |
|---|
| 4174 | 486 90 gm |
|---|
| 4175 | -0.00729 0.(positive. Genbank entries written out in this format will have all \("\) converted to \('\), and all \({}\) converted)ashow |
|---|
| 4176 | 497 90 gm |
|---|
| 4177 | -0.03678 0.(to \([]\) to avoid confusion in the parser. Leading and trailing gaps are removed prior to writing each sequence.)ashow |
|---|
| 4178 | 508 90 gm |
|---|
| 4179 | -0.00801 0.(This format is deliberately verbose in order to be simple to duplicate.)ashow |
|---|
| 4180 | 541 90 gm |
|---|
| 4181 | 12 fz |
|---|
| 4182 | 2 F /|______Times-Roman fnt |
|---|
| 4183 | -0.11645 0.(Genbank format:)ashow |
|---|
| 4184 | 553 90 gm |
|---|
| 4185 | 10 fz |
|---|
| 4186 | 2 F /|______Times-Roman fnt |
|---|
| 4187 | -0.06373 0.(GDE can read a concatenated list of Genbank entries, and extract certain fields from such files. The default)ashow |
|---|
| 4188 | 564 90 gm |
|---|
| 4189 | (method for storing nucleic acid, amino acid, masking sequences or text is in Genbank format. The following)show |
|---|
| 4190 | 575 90 gm |
|---|
| 4191 | -0.19308 0.(fields are recognized:)ashow |
|---|
| 4192 | 597 90 gm |
|---|
| 4193 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4194 | 7 fz |
|---|
| 4195 | 2 F /|______Courier fnt |
|---|
| 4196 | -0.23880 0.(LOCUS:)ashow |
|---|
| 4197 | 597 162 gm |
|---|
| 4198 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4199 | 10 fz |
|---|
| 4200 | 2 F /|______Times-Roman fnt |
|---|
| 4201 | -0.04878 0.(Short name for this sequence \(Maximum of 32 characters\))ashow |
|---|
| 4202 | 0 -3 rm |
|---|
| 4203 | 7 fz |
|---|
| 4204 | 2 F /|______Times-Roman fnt |
|---|
| 4205 | (\240)show |
|---|
| 4206 | 608 90 gm |
|---|
| 4207 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4208 | 2 F /|______Courier fnt |
|---|
| 4209 | -0.21890 0.(DEFINITION:)ashow |
|---|
| 4210 | 608 162 gm |
|---|
| 4211 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4212 | 10 fz |
|---|
| 4213 | 2 F /|______Times-Roman fnt |
|---|
| 4214 | -0.06732 0.(Definition of sequence \(Maximum of 80 characters\))ashow |
|---|
| 4215 | 619 90 gm |
|---|
| 4216 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4217 | 7 fz |
|---|
| 4218 | 2 F /|______Courier fnt |
|---|
| 4219 | -0.22387 0.(ORGANISM:)ashow |
|---|
| 4220 | 619 198 gm |
|---|
| 4221 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4222 | 10 fz |
|---|
| 4223 | 2 F /|______Times-Roman fnt |
|---|
| 4224 | (Full name of organism \(Maximum of 80 characters\))show |
|---|
| 4225 | 630 90 gm |
|---|
| 4226 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4227 | 7 fz |
|---|
| 4228 | 2 F /|______Courier fnt |
|---|
| 4229 | -0.22743 0.(AUTHORS:)ashow |
|---|
| 4230 | 630 198 gm |
|---|
| 4231 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4232 | 10 fz |
|---|
| 4233 | 2 F /|______Times-Roman fnt |
|---|
| 4234 | -0.04580 0.(Authors of this sequence \(Maximum of 80 characters\))ashow |
|---|
| 4235 | 641 90 gm |
|---|
| 4236 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4237 | 7 fz |
|---|
| 4238 | 2 F /|______Courier fnt |
|---|
| 4239 | -0.22111 0.(ACCESSION:)ashow |
|---|
| 4240 | 641 162 gm |
|---|
| 4241 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4242 | 10 fz |
|---|
| 4243 | 2 F /|______Times-Roman fnt |
|---|
| 4244 | -0.06069 0.(ID Number for this sequence \(Maximum of 80 characters\))ashow |
|---|
| 4245 | 652 90 gm |
|---|
| 4246 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4247 | 7 fz |
|---|
| 4248 | 2 F /|______Courier fnt |
|---|
| 4249 | -0.23217 0.(ORIGIN:)ashow |
|---|
| 4250 | 652 162 gm |
|---|
| 4251 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4252 | 10 fz |
|---|
| 4253 | 2 F /|______Times-Roman fnt |
|---|
| 4254 | -0.16001 0.(Beginning of sequence data)ashow |
|---|
| 4255 | 0 -3 rm |
|---|
| 4256 | 7 fz |
|---|
| 4257 | 2 F /|______Times-Roman fnt |
|---|
| 4258 | (\240)show |
|---|
| 4259 | 663 90 gm |
|---|
| 4260 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4261 | 2 F /|______Courier fnt |
|---|
| 4262 | -0.39801 0.(//)ashow |
|---|
| 4263 | 663 198 gm |
|---|
| 4264 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4265 | 10 fz |
|---|
| 4266 | 2 F /|______Times-Roman fnt |
|---|
| 4267 | -0.22740 0.(End of sequence data)ashow |
|---|
| 4268 | 0 -3 rm |
|---|
| 4269 | 7 fz |
|---|
| 4270 | 2 F /|______Times-Roman fnt |
|---|
| 4271 | (\240)show |
|---|
| 4272 | -4096 -4096 gm |
|---|
| 4273 | 0 gr |
|---|
| 4274 | -4095 -4095 lin |
|---|
| 4275 | 6 25 lw |
|---|
| 4276 | 680 90 gm |
|---|
| 4277 | 680 233 lin |
|---|
| 4278 | 25 6 lw |
|---|
| 4279 | 1 1 lw |
|---|
| 4280 | 693 90 gm |
|---|
| 4281 | 1 setTxMode |
|---|
| 4282 | 9 fz |
|---|
| 4283 | 2 F /|______Times-Roman fnt |
|---|
| 4284 | -0.03189 0.(\240 Required field)ashow |
|---|
| 4285 | F T cp |
|---|
| 4286 | %%Page: ? 15 |
|---|
| 4287 | op |
|---|
| 4288 | 31 30 xl |
|---|
| 4289 | 1 1 pen |
|---|
| 4290 | 753 90 gm |
|---|
| 4291 | (nc 31 30 761 582 6 rc)kp |
|---|
| 4292 | 1 setTxMode |
|---|
| 4293 | 0 fs |
|---|
| 4294 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4295 | 7 fz |
|---|
| 4296 | 2 F /|______Times-Roman fnt |
|---|
| 4297 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 4298 | 753 300 gm |
|---|
| 4299 | 12 fz |
|---|
| 4300 | 2 F /|______Times-Roman fnt |
|---|
| 4301 | (15)show |
|---|
| 4302 | 92 90 gm |
|---|
| 4303 | 10 fz |
|---|
| 4304 | 2 F /|______Times-Roman fnt |
|---|
| 4305 | 0.01617 0. 32 0.00161 0.(All other lines are retained as comments. The LOCUS line also specifies what type of sequence follows.)awidthshow |
|---|
| 4306 | 103 90 gm |
|---|
| 4307 | 0.31143 0. 32 0.03114 0.(The form of this line is:)awidthshow |
|---|
| 4308 | 122 90 gm |
|---|
| 4309 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4310 | 7 fz |
|---|
| 4311 | 2 F /|______Courier fnt |
|---|
| 4312 | -0.19900 0.(LOCUS )ashow |
|---|
| 4313 | 2 fs |
|---|
| 4314 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4315 | 2 F /|______Courier-Oblique fnt |
|---|
| 4316 | -0.26533 0.(name)ashow |
|---|
| 4317 | 122 198 gm |
|---|
| 4318 | -0.19900 0.(size)ashow |
|---|
| 4319 | 0 fs |
|---|
| 4320 | 2 F /|______Courier fnt |
|---|
| 4321 | -0.29850 0.( bp)ashow |
|---|
| 4322 | 122 234 gm |
|---|
| 4323 | 2 fs |
|---|
| 4324 | 2 F /|______Courier-Oblique fnt |
|---|
| 4325 | -0.26533 0.(type)ashow |
|---|
| 4326 | 122 270 gm |
|---|
| 4327 | -0.26533 0.(date)ashow |
|---|
| 4328 | 144 90 gm |
|---|
| 4329 | 0 fs |
|---|
| 4330 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4331 | 10 fz |
|---|
| 4332 | 2 F /|______Times-Roman fnt |
|---|
| 4333 | 0.23757 0. 32 0.02375 0.(where )awidthshow |
|---|
| 4334 | 2 fs |
|---|
| 4335 | {}mark T /Times-Italic /|______Times-Italic 0 rf |
|---|
| 4336 | 2 F /|______Times-Italic fnt |
|---|
| 4337 | 0.07641 0.(name)ashow |
|---|
| 4338 | 0 fs |
|---|
| 4339 | 2 F /|______Times-Roman fnt |
|---|
| 4340 | 0.19012 0. 32 0.01901 0.( is the Genbank Locus name, )awidthshow |
|---|
| 4341 | 2 fs |
|---|
| 4342 | 2 F /|______Times-Italic fnt |
|---|
| 4343 | 0.16464 0. 32 0.01646 0.(size )awidthshow |
|---|
| 4344 | 0 fs |
|---|
| 4345 | 2 F /|______Times-Roman fnt |
|---|
| 4346 | 0.17791 0. 32 0.01779 0.(is total base count, )awidthshow |
|---|
| 4347 | 2 fs |
|---|
| 4348 | 2 F /|______Times-Italic fnt |
|---|
| 4349 | 0.05877 0.(type)ashow |
|---|
| 4350 | 0 fs |
|---|
| 4351 | 2 F /|______Times-Roman fnt |
|---|
| 4352 | 0.21957 0. 32 0.02195 0.( is one of DNA, RNA, PROTEIN,)awidthshow |
|---|
| 4353 | 155 90 gm |
|---|
| 4354 | -0.03018 0.(MASK, or TEXT and )ashow |
|---|
| 4355 | 2 fs |
|---|
| 4356 | 2 F /|______Times-Italic fnt |
|---|
| 4357 | -0.02607 0.(date)ashow |
|---|
| 4358 | 0 fs |
|---|
| 4359 | 2 F /|______Times-Roman fnt |
|---|
| 4360 | -0.02537 0.( is of the form dd-MON-yyyy. In this way, the standard Genbank format is)ashow |
|---|
| 4361 | 166 90 gm |
|---|
| 4362 | -0.06455 0.(extended to store all text, mask and protein data. The Genbank character set has also been extended in order)ashow |
|---|
| 4363 | 177 90 gm |
|---|
| 4364 | -0.04171 0.(to support these other data types. Valid characters are:)ashow |
|---|
| 4365 | 199 90 gm |
|---|
| 4366 | -0.04614 0.(DNA/RNA:)ashow |
|---|
| 4367 | 199 198 gm |
|---|
| 4368 | -0.00355 0.(Full IUPAC coding as well as '-' and '~' characters for alignment)ashow |
|---|
| 4369 | 210 198 gm |
|---|
| 4370 | -0.10925 0.(gaps)ashow |
|---|
| 4371 | 221 90 gm |
|---|
| 4372 | 0.04852 0.(Protein:)ashow |
|---|
| 4373 | 221 198 gm |
|---|
| 4374 | -0.01260 0.(All valid single letter codes plus '-' and '~'. Other ASCII characters)ashow |
|---|
| 4375 | 232 198 gm |
|---|
| 4376 | -0.04739 0.(may be inserted, however external functions may be confused by)ashow |
|---|
| 4377 | 243 198 gm |
|---|
| 4378 | -0.12287 0.(such characters.)ashow |
|---|
| 4379 | 254 90 gm |
|---|
| 4380 | (Mask:)show |
|---|
| 4381 | 254 198 gm |
|---|
| 4382 | 0.01281 0. 32 0.00128 0.(All legal printable ASCII characters. If used as a selection mask, all)awidthshow |
|---|
| 4383 | 265 198 gm |
|---|
| 4384 | 0.12207 0. 32 0.01220 0.(columns containing a '0' will be removed from any analysis.)awidthshow |
|---|
| 4385 | 276 90 gm |
|---|
| 4386 | -0.02584 0.(Text:)ashow |
|---|
| 4387 | 276 198 gm |
|---|
| 4388 | -0.05348 0.(All valid ASCII characters.)ashow |
|---|
| 4389 | 298 90 gm |
|---|
| 4390 | 0.05142 0. 32 0.00514 0.(Here is a valid Genbank entry for two E.coli tRNA's:)awidthshow |
|---|
| 4391 | 317 90 gm |
|---|
| 4392 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4393 | 7 fz |
|---|
| 4394 | 2 F /|______Courier fnt |
|---|
| 4395 | -0.20202 0.(LOCUS ECOTRNT4 76 bp RNA 28-JAN-1991)ashow |
|---|
| 4396 | 325 90 gm |
|---|
| 4397 | -0.20275 0.(DEFINITION E. coli \(T4 infected\) vulnerable tRNA \(A\).)ashow |
|---|
| 4398 | 333 90 gm |
|---|
| 4399 | -0.20637 0.( ORGANISM Escherichia coli)ashow |
|---|
| 4400 | 341 90 gm |
|---|
| 4401 | -0.20315 0.( AUTHORS Amitsur,M., Levitz,R. and Kaufmann,G.)ashow |
|---|
| 4402 | 349 90 gm |
|---|
| 4403 | -0.20362 0.(FEATURES From To/Span Description)ashow |
|---|
| 4404 | 357 90 gm |
|---|
| 4405 | -0.20298 0.( tRNA 1 76 vulnerable tRNA\(A\))ashow |
|---|
| 4406 | 365 90 gm |
|---|
| 4407 | -0.21559 0.(BASE COUNT ?)ashow |
|---|
| 4408 | 373 90 gm |
|---|
| 4409 | -0.23880 0.(ORIGIN)ashow |
|---|
| 4410 | 381 90 gm |
|---|
| 4411 | -0.20169 0.( 1 GGGUCGUUAG CUCAGUUGGU AGAGCAGUUG ACUUUUAAUC AAUUGGNCGC AGGUUCGAAU)ashow |
|---|
| 4412 | 389 90 gm |
|---|
| 4413 | -0.20666 0.( 61 CCUGCACGAC CCACCA)ashow |
|---|
| 4414 | 397 90 gm |
|---|
| 4415 | -0.39801 0.(//)ashow |
|---|
| 4416 | 405 90 gm |
|---|
| 4417 | -0.20202 0.(LOCUS ECOTRQ1 75 bp RNA 28-JAN-1991)ashow |
|---|
| 4418 | 413 90 gm |
|---|
| 4419 | -0.20587 0.(DEFINITION E.coli Gln-tRNA-1.)ashow |
|---|
| 4420 | 421 90 gm |
|---|
| 4421 | -0.20637 0.( ORGANISM Escherichia coli)ashow |
|---|
| 4422 | 429 90 gm |
|---|
| 4423 | -0.20503 0.( AUTHORS Yaniv,M. and Folk,W.R.)ashow |
|---|
| 4424 | 437 90 gm |
|---|
| 4425 | -0.20166 0.(SOURCE -REFERENCE [1] JOURNAL J. Biol. Chem. 250, 3243-3253 \(1975\))ashow |
|---|
| 4426 | 445 90 gm |
|---|
| 4427 | -0.20362 0.(FEATURES From To/Span Description)ashow |
|---|
| 4428 | 453 90 gm |
|---|
| 4429 | -0.20269 0.( tRNA 1 75 Gln-tRNA-1 \(NAR: 0510\))ashow |
|---|
| 4430 | 461 90 gm |
|---|
| 4431 | -0.20231 0.( refnumbr 1 1 sequence not numbered in [1])ashow |
|---|
| 4432 | 469 90 gm |
|---|
| 4433 | -0.21559 0.(BASE COUNT ?)ashow |
|---|
| 4434 | 477 90 gm |
|---|
| 4435 | -0.23880 0.(ORIGIN)ashow |
|---|
| 4436 | 485 90 gm |
|---|
| 4437 | -0.20169 0.( 1 UGGGGUAUCG CCAAGCGGUA AGGCACCGGU UUUUGAUACC GGCAUUCCCU GGUUCGAAUC)ashow |
|---|
| 4438 | 493 90 gm |
|---|
| 4439 | -0.20697 0.( 61 CAGGUACCCC AGCCA)ashow |
|---|
| 4440 | 501 90 gm |
|---|
| 4441 | -0.39801 0.(//)ashow |
|---|
| 4442 | 534 90 gm |
|---|
| 4443 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4444 | 12 fz |
|---|
| 4445 | 2 F /|______Times-Roman fnt |
|---|
| 4446 | -0.18539 0.(Flat file format:)ashow |
|---|
| 4447 | 546 90 gm |
|---|
| 4448 | 10 fz |
|---|
| 4449 | 2 F /|______Times-Roman fnt |
|---|
| 4450 | 0.11169 0. 32 0.01116 0.(This is a simplified format for importing sequence data, and passing it out to analysis functions. Very little)awidthshow |
|---|
| 4451 | 557 90 gm |
|---|
| 4452 | 0.02944 0. 32 0.00294 0.(information is actually retained in this format, and should be used carefully so as not to lose attribute)awidthshow |
|---|
| 4453 | 568 90 gm |
|---|
| 4454 | 0.03372 0. 32 0.00337 0.(information. It is defined as follow:)awidthshow |
|---|
| 4455 | 587 90 gm |
|---|
| 4456 | 2 fs |
|---|
| 4457 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4458 | 7 fz |
|---|
| 4459 | 2 F /|______Courier-Oblique fnt |
|---|
| 4460 | -0.20729 0.(type_character short_name)ashow |
|---|
| 4461 | 595 90 gm |
|---|
| 4462 | -0.21559 0.(sequence_data)ashow |
|---|
| 4463 | 603 90 gm |
|---|
| 4464 | -0.21559 0.(sequence_data)ashow |
|---|
| 4465 | 611 90 gm |
|---|
| 4466 | -0.21559 0.(sequence_data)ashow |
|---|
| 4467 | 619 90 gm |
|---|
| 4468 | -0.29850 0.(...)ashow |
|---|
| 4469 | 641 90 gm |
|---|
| 4470 | 0 fs |
|---|
| 4471 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4472 | 10 fz |
|---|
| 4473 | 2 F /|______Times-Roman fnt |
|---|
| 4474 | -0.02508 0.(The type character is # for DNA/RNA, % for protein sequence, @ for mask sequence, and " for text. The)ashow |
|---|
| 4475 | 652 90 gm |
|---|
| 4476 | 0.07781 0. 32 0.00778 0.(short name is the same as the LOCUS line in Genbank. This is followed by lines of sequence, each ending)awidthshow |
|---|
| 4477 | 663 90 gm |
|---|
| 4478 | -0.03877 0.(with a return character.These lines are read until the next type character is encountered, or until the end of the)ashow |
|---|
| 4479 | 674 90 gm |
|---|
| 4480 | -0.01963 0.(file is reached. Care should be taken in using this format with text as space characters are stripped)ashow |
|---|
| 4481 | 685 90 gm |
|---|
| 4482 | 0.03921 0. 32 0.00392 0.(automatically. As of release 2.0, flat file format allows for an optional offset to be specified in parentheses)awidthshow |
|---|
| 4483 | 696 90 gm |
|---|
| 4484 | -0.07716 0.(after the sequence name. An offset represents how many leading gap characters should be placed before the)ashow |
|---|
| 4485 | 707 90 gm |
|---|
| 4486 | 0.07568 0. 32 0.00756 0.(start of a sequence. If this offset does not exist, then it is defined to be 0.)awidthshow |
|---|
| 4487 | F T cp |
|---|
| 4488 | %%Page: ? 16 |
|---|
| 4489 | op |
|---|
| 4490 | 31 30 xl |
|---|
| 4491 | 1 1 pen |
|---|
| 4492 | 753 90 gm |
|---|
| 4493 | (nc 31 30 761 582 6 rc)kp |
|---|
| 4494 | 1 setTxMode |
|---|
| 4495 | 0 fs |
|---|
| 4496 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4497 | 7 fz |
|---|
| 4498 | 2 F /|______Times-Roman fnt |
|---|
| 4499 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 4500 | 753 300 gm |
|---|
| 4501 | 12 fz |
|---|
| 4502 | 2 F /|______Times-Roman fnt |
|---|
| 4503 | (16)show |
|---|
| 4504 | 81 90 gm |
|---|
| 4505 | 10 fz |
|---|
| 4506 | 2 F /|______Times-Roman fnt |
|---|
| 4507 | 0.13809 0. 32 0.01380 0.(Here is a sample flat file for two Ecoli tRNA's:)awidthshow |
|---|
| 4508 | 100 90 gm |
|---|
| 4509 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4510 | 7 fz |
|---|
| 4511 | 2 F /|______Courier fnt |
|---|
| 4512 | -0.22387 0.(#ECOTRNT4)ashow |
|---|
| 4513 | 108 90 gm |
|---|
| 4514 | -0.20237 0.(GGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUGGNCGCAGGUUCGAAU)ashow |
|---|
| 4515 | 116 90 gm |
|---|
| 4516 | -0.21226 0.(CCUGCACGACCCACCA)ashow |
|---|
| 4517 | 124 90 gm |
|---|
| 4518 | -0.22743 0.(#ECOTRQ1)ashow |
|---|
| 4519 | 132 90 gm |
|---|
| 4520 | -0.20237 0.(UGGGGUAUCGCCAAGCGGUAAGGCACCGGUUUUUGAUACCGGCAUUCCCUGGUUCGAAUC)ashow |
|---|
| 4521 | 140 90 gm |
|---|
| 4522 | -0.21322 0.(CAGGUACCCCAGCCA)ashow |
|---|
| 4523 | 173 90 gm |
|---|
| 4524 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4525 | 12 fz |
|---|
| 4526 | 2 F /|______Times-Roman fnt |
|---|
| 4527 | -0.09919 0.(Color mask:)ashow |
|---|
| 4528 | 185 90 gm |
|---|
| 4529 | 10 fz |
|---|
| 4530 | 2 F /|______Times-Roman fnt |
|---|
| 4531 | 0.10299 0. 32 0.01029 0.(The format for a color mask has been kept simple to make implementation of color functions easy. The)awidthshow |
|---|
| 4532 | 196 90 gm |
|---|
| 4533 | 0.05355 0. 32 0.00535 0.(format optionally defines which sequence to color, whether or not to color alignment gaps in the existing)awidthshow |
|---|
| 4534 | 207 90 gm |
|---|
| 4535 | 0.04089 0. 32 0.00408 0.(sequence, and how long the following mask will be. It is then followed by a list of decimal color codes)awidthshow |
|---|
| 4536 | 218 90 gm |
|---|
| 4537 | -0.01760 0.(\(range 0 to 15\) for each position in the sequence. There are four keywords used in the color mask file.)ashow |
|---|
| 4538 | 229 90 gm |
|---|
| 4539 | -0.12745 0.(Those keywords are:)ashow |
|---|
| 4540 | 251 90 gm |
|---|
| 4541 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4542 | 7 fz |
|---|
| 4543 | 2 F /|______Courier fnt |
|---|
| 4544 | -0.19900 0.(name:)ashow |
|---|
| 4545 | 2 fs |
|---|
| 4546 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4547 | 2 F /|______Courier-Oblique fnt |
|---|
| 4548 | -0.22111 0.(short name)ashow |
|---|
| 4549 | 251 234 gm |
|---|
| 4550 | 0 fs |
|---|
| 4551 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4552 | 10 fz |
|---|
| 4553 | 2 F /|______Times-Roman fnt |
|---|
| 4554 | -0.09985 0.(If short name matches a currently loaded sequence,)ashow |
|---|
| 4555 | 262 234 gm |
|---|
| 4556 | 0.16754 0. 32 0.01675 0.(then impose this color mask on that sequence. If this)awidthshow |
|---|
| 4557 | 273 234 gm |
|---|
| 4558 | 0.04577 0. 32 0.00457 0.(line is omitted, then color all sequences this color, and the color)awidthshow |
|---|
| 4559 | 284 234 gm |
|---|
| 4560 | 0.10223 0. 32 0.01022 0.(mask is expected to start at the leftmost column on the screen.)awidthshow |
|---|
| 4561 | 306 90 gm |
|---|
| 4562 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4563 | 7 fz |
|---|
| 4564 | 2 F /|______Courier fnt |
|---|
| 4565 | -0.19900 0.(length:)ashow |
|---|
| 4566 | 2 fs |
|---|
| 4567 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4568 | 2 F /|______Courier-Oblique fnt |
|---|
| 4569 | -0.23880 0.(length)ashow |
|---|
| 4570 | 306 234 gm |
|---|
| 4571 | 0 fs |
|---|
| 4572 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4573 | 10 fz |
|---|
| 4574 | 2 F /|______Times-Roman fnt |
|---|
| 4575 | 0.40191 0. 32 0.04019 0.(The following list in length long)awidthshow |
|---|
| 4576 | 328 90 gm |
|---|
| 4577 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4578 | 7 fz |
|---|
| 4579 | 2 F /|______Courier fnt |
|---|
| 4580 | -0.23217 0.(nodash:)ashow |
|---|
| 4581 | 328 234 gm |
|---|
| 4582 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4583 | 10 fz |
|---|
| 4584 | 2 F /|______Times-Roman fnt |
|---|
| 4585 | 0.00579 0. 32 0.00057 0.(Skip over dash characters when imposing this color mask)awidthshow |
|---|
| 4586 | 339 234 gm |
|---|
| 4587 | -0.03414 0.(on the named sequence. This allows an unaligned color)ashow |
|---|
| 4588 | 350 234 gm |
|---|
| 4589 | -0.09637 0.(mask to be placed over aligned sequence.)ashow |
|---|
| 4590 | 372 90 gm |
|---|
| 4591 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4592 | 7 fz |
|---|
| 4593 | 2 F /|______Courier fnt |
|---|
| 4594 | -0.23880 0.(start:)ashow |
|---|
| 4595 | 372 234 gm |
|---|
| 4596 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4597 | 10 fz |
|---|
| 4598 | 2 F /|______Times-Roman fnt |
|---|
| 4599 | 0.02685 0. 32 0.00268 0.(Begin reading the color mask on the next line.)awidthshow |
|---|
| 4600 | 394 90 gm |
|---|
| 4601 | 0.04302 0. 32 0.00430 0.(Here is a sample color mask file:)awidthshow |
|---|
| 4602 | 413 90 gm |
|---|
| 4603 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4604 | 7 fz |
|---|
| 4605 | 2 F /|______Courier fnt |
|---|
| 4606 | -0.21070 0.(name:test_sequence)ashow |
|---|
| 4607 | 421 90 gm |
|---|
| 4608 | -0.22387 0.(length:10)ashow |
|---|
| 4609 | 429 90 gm |
|---|
| 4610 | -0.23217 0.(nodash:)ashow |
|---|
| 4611 | 437 90 gm |
|---|
| 4612 | -0.23880 0.(start:)ashow |
|---|
| 4613 | 445 90 gm |
|---|
| 4614 | (3)show |
|---|
| 4615 | 453 90 gm |
|---|
| 4616 | (3)show |
|---|
| 4617 | 461 90 gm |
|---|
| 4618 | (3)show |
|---|
| 4619 | 469 90 gm |
|---|
| 4620 | (6)show |
|---|
| 4621 | 477 90 gm |
|---|
| 4622 | (5)show |
|---|
| 4623 | 485 90 gm |
|---|
| 4624 | (3)show |
|---|
| 4625 | 493 90 gm |
|---|
| 4626 | (3)show |
|---|
| 4627 | 501 90 gm |
|---|
| 4628 | (3)show |
|---|
| 4629 | 509 90 gm |
|---|
| 4630 | (2)show |
|---|
| 4631 | 517 90 gm |
|---|
| 4632 | (7)show |
|---|
| 4633 | 536 90 gm |
|---|
| 4634 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4635 | 10 fz |
|---|
| 4636 | 2 F /|______Times-Roman fnt |
|---|
| 4637 | -0.00993 0.(The colors in the default color lookup table are:)ashow |
|---|
| 4638 | 547 90 gm |
|---|
| 4639 | (0)show |
|---|
| 4640 | 547 126 gm |
|---|
| 4641 | -0.10839 0.(White)ashow |
|---|
| 4642 | 547 270 gm |
|---|
| 4643 | (8)show |
|---|
| 4644 | 547 306 gm |
|---|
| 4645 | -0.33126 0.(Black)ashow |
|---|
| 4646 | 558 90 gm |
|---|
| 4647 | (1)show |
|---|
| 4648 | 558 126 gm |
|---|
| 4649 | -0.08668 0.(Yellow)ashow |
|---|
| 4650 | 558 270 gm |
|---|
| 4651 | (9)show |
|---|
| 4652 | 558 306 gm |
|---|
| 4653 | -0.09704 0.(Grey 1)ashow |
|---|
| 4654 | 569 90 gm |
|---|
| 4655 | (2)show |
|---|
| 4656 | 569 126 gm |
|---|
| 4657 | (Violet)show |
|---|
| 4658 | 569 270 gm |
|---|
| 4659 | (10)show |
|---|
| 4660 | 569 306 gm |
|---|
| 4661 | -0.09704 0.(Grey 2)ashow |
|---|
| 4662 | 580 90 gm |
|---|
| 4663 | (3)show |
|---|
| 4664 | 580 126 gm |
|---|
| 4665 | -0.55415 0.(Red)ashow |
|---|
| 4666 | 580 270 gm |
|---|
| 4667 | (11)show |
|---|
| 4668 | 580 306 gm |
|---|
| 4669 | -0.09704 0.(Grey 3)ashow |
|---|
| 4670 | 591 90 gm |
|---|
| 4671 | (4)show |
|---|
| 4672 | 591 126 gm |
|---|
| 4673 | -0.55255 0.(Aqua)ashow |
|---|
| 4674 | 591 270 gm |
|---|
| 4675 | (12)show |
|---|
| 4676 | 591 306 gm |
|---|
| 4677 | -0.09704 0.(Grey 4)ashow |
|---|
| 4678 | 602 90 gm |
|---|
| 4679 | (5)show |
|---|
| 4680 | 602 126 gm |
|---|
| 4681 | -0.11416 0.(Lime Green)ashow |
|---|
| 4682 | 602 270 gm |
|---|
| 4683 | (13)show |
|---|
| 4684 | 602 306 gm |
|---|
| 4685 | -0.09704 0.(Grey 5)ashow |
|---|
| 4686 | 613 90 gm |
|---|
| 4687 | (6)show |
|---|
| 4688 | 613 126 gm |
|---|
| 4689 | -0.29557 0.(Blue)ashow |
|---|
| 4690 | 613 270 gm |
|---|
| 4691 | (14)show |
|---|
| 4692 | 613 306 gm |
|---|
| 4693 | -0.09704 0.(Grey 6)ashow |
|---|
| 4694 | 624 90 gm |
|---|
| 4695 | (7)show |
|---|
| 4696 | 624 126 gm |
|---|
| 4697 | -0.02070 0.(Purple)ashow |
|---|
| 4698 | 624 270 gm |
|---|
| 4699 | (15)show |
|---|
| 4700 | 624 306 gm |
|---|
| 4701 | -0.10839 0.(White)ashow |
|---|
| 4702 | F T cp |
|---|
| 4703 | %%Page: ? 17 |
|---|
| 4704 | op |
|---|
| 4705 | 31 30 xl |
|---|
| 4706 | 1 1 pen |
|---|
| 4707 | 753 90 gm |
|---|
| 4708 | (nc 31 30 761 582 6 rc)kp |
|---|
| 4709 | 1 setTxMode |
|---|
| 4710 | 0 fs |
|---|
| 4711 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4712 | 7 fz |
|---|
| 4713 | 2 F /|______Times-Roman fnt |
|---|
| 4714 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 4715 | 753 300 gm |
|---|
| 4716 | 12 fz |
|---|
| 4717 | 2 F /|______Times-Roman fnt |
|---|
| 4718 | (17)show |
|---|
| 4719 | 84 90 gm |
|---|
| 4720 | 14 fz |
|---|
| 4721 | 2 F /|______Times-Roman fnt |
|---|
| 4722 | 0.21636 0. 32 0.02163 0.(Appendix B, Adding Functions)awidthshow |
|---|
| 4723 | 107 90 gm |
|---|
| 4724 | 10 fz |
|---|
| 4725 | 2 F /|______Times-Roman fnt |
|---|
| 4726 | -0.04040 0.(The GDE uses a menu description language to define what external programs it can call, and what parameters)ashow |
|---|
| 4727 | 118 90 gm |
|---|
| 4728 | 0.08483 0. 32 0.00848 0.(and data to pass to each function. This language allows users to customize their own environment to suite)awidthshow |
|---|
| 4729 | 129 90 gm |
|---|
| 4730 | -0.14483 0.(individual needs.)ashow |
|---|
| 4731 | 151 90 gm |
|---|
| 4732 | -0.02262 0.(The following is how the GDE handles external programs when selected from a menu:)ashow |
|---|
| 4733 | 0 0 gm |
|---|
| 4734 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4735 | 64 gr |
|---|
| 4736 | 164 211 201 277 14.5 14.5 4 rr |
|---|
| 4737 | 0 gr |
|---|
| 4738 | 164.5 211.5 200.5 276.5 14.5 14.5 0 rr |
|---|
| 4739 | 64 gr |
|---|
| 4740 | 164 126 201 192 14.5 14.5 4 rr |
|---|
| 4741 | 0 gr |
|---|
| 4742 | 164.5 126.5 200.5 191.5 14.5 14.5 0 rr |
|---|
| 4743 | 64 gr |
|---|
| 4744 | 164 299 201 365 14.5 14.5 4 rr |
|---|
| 4745 | 0 gr |
|---|
| 4746 | 164.5 299.5 200.5 364.5 14.5 14.5 0 rr |
|---|
| 4747 | 182 192 gm |
|---|
| 4748 | (nc 164 126 255 208 6 rc)kp |
|---|
| 4749 | 182 210 lin |
|---|
| 4750 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4751 | 176 204 189 218 165 195 4 ar |
|---|
| 4752 | 182 277 gm |
|---|
| 4753 | (nc 164 126 255 296 6 rc)kp |
|---|
| 4754 | 182 299 lin |
|---|
| 4755 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4756 | 176 293 189 306 165 195 4 ar |
|---|
| 4757 | 145 385 91 243 th |
|---|
| 4758 | 158 123 gm |
|---|
| 4759 | 1 setTxMode |
|---|
| 4760 | 12 fz |
|---|
| 4761 | 2 F /|______Times-Roman fnt |
|---|
| 4762 | -0.17835 0.(Display dialog)ashow |
|---|
| 4763 | 165 123 gm |
|---|
| 4764 | -0.07539 0.(box presenting)ashow |
|---|
| 4765 | 172 123 gm |
|---|
| 4766 | 0.30838 0. 32 0.03083 0.(user options.)awidthshow |
|---|
| 4767 | 177 214 gm |
|---|
| 4768 | -0.19335 0.(Write out selected)ashow |
|---|
| 4769 | 184 214 gm |
|---|
| 4770 | -0.13066 0.(data \(if any\) to)ashow |
|---|
| 4771 | 191 214 gm |
|---|
| 4772 | -0.06405 0.(temporary files.)ashow |
|---|
| 4773 | 177 303 gm |
|---|
| 4774 | -0.20286 0.(Call external )ashow |
|---|
| 4775 | 184 303 gm |
|---|
| 4776 | (function, passing)show |
|---|
| 4777 | 191 303 gm |
|---|
| 4778 | -0.10202 0.(parameters and data.)ashow |
|---|
| 4779 | tu |
|---|
| 4780 | 182 299 gm |
|---|
| 4781 | 64 gr |
|---|
| 4782 | 214 299 255 365 4 rc |
|---|
| 4783 | 0 gr |
|---|
| 4784 | 214.5 299.5 254.5 364.5 0 rc |
|---|
| 4785 | 201 331 gm |
|---|
| 4786 | (nc 164 126 211 369 6 rc)kp |
|---|
| 4787 | 213 331 lin |
|---|
| 4788 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4789 | 207 324 221 338 255 285 4 ar |
|---|
| 4790 | ts |
|---|
| 4791 | 223 306 gm |
|---|
| 4792 | 1 setTxMode |
|---|
| 4793 | -0.15270 0.(External program)ashow |
|---|
| 4794 | 230 306 gm |
|---|
| 4795 | 0.09719 0. 32 0.00971 0.(runs analysis, and)awidthshow |
|---|
| 4796 | 237 306 gm |
|---|
| 4797 | -0.06079 0.(writes results to)ashow |
|---|
| 4798 | 244 306 gm |
|---|
| 4799 | -0.06405 0.(temporary files.)ashow |
|---|
| 4800 | tu |
|---|
| 4801 | 213 331 gm |
|---|
| 4802 | 64 gr |
|---|
| 4803 | 217 211 255 277 14.5 14.5 4 rr |
|---|
| 4804 | 0 gr |
|---|
| 4805 | 217.5 211.5 254.5 276.5 14.5 14.5 0 rr |
|---|
| 4806 | 236 299 gm |
|---|
| 4807 | (nc 164 280 255 369 6 rc)kp |
|---|
| 4808 | 236 277 lin |
|---|
| 4809 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4810 | 229 271 243 284 345 375 4 ar |
|---|
| 4811 | ts |
|---|
| 4812 | 227 218 gm |
|---|
| 4813 | 1 setTxMode |
|---|
| 4814 | -0.08067 0.(GDE reads results)ashow |
|---|
| 4815 | 234 218 gm |
|---|
| 4816 | -0.11495 0.(of temporary files)ashow |
|---|
| 4817 | 241 218 gm |
|---|
| 4818 | 0.20019 0. 32 0.02001 0.(\(if any\).)awidthshow |
|---|
| 4819 | tu |
|---|
| 4820 | 236 277 gm |
|---|
| 4821 | 64 gr |
|---|
| 4822 | 217 126 255 192 14.5 14.5 4 rr |
|---|
| 4823 | 0 gr |
|---|
| 4824 | 217.5 126.5 254.5 191.5 14.5 14.5 0 rr |
|---|
| 4825 | 236 211 gm |
|---|
| 4826 | (nc 164 195 255 369 6 rc)kp |
|---|
| 4827 | 236 193 lin |
|---|
| 4828 | (nc 164 126 255 369 6 rc)kp |
|---|
| 4829 | 229 185 243 199 345 375 4 ar |
|---|
| 4830 | ts |
|---|
| 4831 | 227 132 gm |
|---|
| 4832 | 1 setTxMode |
|---|
| 4833 | -0.13632 0.(GDE cleans up)ashow |
|---|
| 4834 | 234 132 gm |
|---|
| 4835 | -0.06405 0.(temporary files,)ashow |
|---|
| 4836 | 241 132 gm |
|---|
| 4837 | -0.04287 0.(and displays new)ashow |
|---|
| 4838 | 248 132 gm |
|---|
| 4839 | (data.)show |
|---|
| 4840 | tu |
|---|
| 4841 | 275 90 gm |
|---|
| 4842 | (nc 31 30 761 582 6 rc)kp |
|---|
| 4843 | 10 fz |
|---|
| 4844 | 2 F /|______Times-Roman fnt |
|---|
| 4845 | -0.00254 0.(Each step in this process is described in a file .GDEmenus in the user's current or home directory.)ashow |
|---|
| 4846 | 297 90 gm |
|---|
| 4847 | -0.02418 0.(The language used in this file describes three phases to an external function call. The first phase describes)ashow |
|---|
| 4848 | 308 90 gm |
|---|
| 4849 | 0.12283 0. 32 0.01228 0.(the menu item as it will appear, and the Unix command line that is actually run when it is selected. The)awidthshow |
|---|
| 4850 | 319 90 gm |
|---|
| 4851 | -0.06280 0.(second phase describes how to prompt for the parameters needed by the function. The third phase describes)ashow |
|---|
| 4852 | 330 90 gm |
|---|
| 4853 | -0.05538 0.(what data needs to be passed as input to the external function, and what data \(if any\) needs to be read back)ashow |
|---|
| 4854 | 341 90 gm |
|---|
| 4855 | 0.58975 0. 32 0.05897 0.(from its output.)awidthshow |
|---|
| 4856 | 363 90 gm |
|---|
| 4857 | -0.01350 0.(The form of the language is a simple keyword/value list delimited by the colon \(:\) character. The language)ashow |
|---|
| 4858 | 374 90 gm |
|---|
| 4859 | 0.13610 0. 32 0.01361 0.(retains old values until new ones are set. For example, setting the menu name is done once for all items in)awidthshow |
|---|
| 4860 | 385 90 gm |
|---|
| 4861 | 0.02822 0. 32 0.00282 0.(that menu, and is only reset when the next menu is reached.)awidthshow |
|---|
| 4862 | 407 90 gm |
|---|
| 4863 | -0.09211 0.(The keywords for phase one are:)ashow |
|---|
| 4864 | 429 90 gm |
|---|
| 4865 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4866 | 7 fz |
|---|
| 4867 | 2 F /|______Courier fnt |
|---|
| 4868 | -0.19900 0.(menu:)ashow |
|---|
| 4869 | 2 fs |
|---|
| 4870 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4871 | 2 F /|______Courier-Oblique fnt |
|---|
| 4872 | -0.22387 0.(menu name)ashow |
|---|
| 4873 | 429 306 gm |
|---|
| 4874 | 0 fs |
|---|
| 4875 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4876 | 10 fz |
|---|
| 4877 | 2 F /|______Times-Roman fnt |
|---|
| 4878 | -0.06471 0.(Name of current menu)ashow |
|---|
| 4879 | 440 90 gm |
|---|
| 4880 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4881 | 7 fz |
|---|
| 4882 | 2 F /|______Courier fnt |
|---|
| 4883 | -0.19900 0.(item:)ashow |
|---|
| 4884 | 2 fs |
|---|
| 4885 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4886 | 2 F /|______Courier-Oblique fnt |
|---|
| 4887 | -0.22387 0.(item name)ashow |
|---|
| 4888 | 440 306 gm |
|---|
| 4889 | 0 fs |
|---|
| 4890 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4891 | 10 fz |
|---|
| 4892 | 2 F /|______Times-Roman fnt |
|---|
| 4893 | -0.02093 0.(Name of current menu item)ashow |
|---|
| 4894 | 451 90 gm |
|---|
| 4895 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4896 | 7 fz |
|---|
| 4897 | 2 F /|______Courier fnt |
|---|
| 4898 | -0.19900 0.(itemmeta:)ashow |
|---|
| 4899 | 2 fs |
|---|
| 4900 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4901 | 2 F /|______Courier-Oblique fnt |
|---|
| 4902 | -0.22743 0.(meta_key)ashow |
|---|
| 4903 | 451 306 gm |
|---|
| 4904 | 0 fs |
|---|
| 4905 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4906 | 10 fz |
|---|
| 4907 | 2 F /|______Times-Roman fnt |
|---|
| 4908 | -0.12283 0.(Meta key equivalence \(quick keys\))ashow |
|---|
| 4909 | 462 90 gm |
|---|
| 4910 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4911 | 7 fz |
|---|
| 4912 | 2 F /|______Courier fnt |
|---|
| 4913 | -0.19900 0.(itemhelp:)ashow |
|---|
| 4914 | 2 fs |
|---|
| 4915 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4916 | 2 F /|______Courier-Oblique fnt |
|---|
| 4917 | -0.22387 0.(help_file)ashow |
|---|
| 4918 | 462 306 gm |
|---|
| 4919 | 0 fs |
|---|
| 4920 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4921 | 10 fz |
|---|
| 4922 | 2 F /|______Times-Roman fnt |
|---|
| 4923 | 0.15548 0. 32 0.01554 0.(Help file \(either full path, or in)awidthshow |
|---|
| 4924 | 473 306 gm |
|---|
| 4925 | -0.09056 0.(GDE_HELP_DIR\))ashow |
|---|
| 4926 | 481 90 gm |
|---|
| 4927 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4928 | 7 fz |
|---|
| 4929 | 2 F /|______Courier fnt |
|---|
| 4930 | -0.19900 0.(itemmethod:)ashow |
|---|
| 4931 | 2 fs |
|---|
| 4932 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4933 | 2 F /|______Courier-Oblique fnt |
|---|
| 4934 | -0.21710 0.(Unix command)ashow |
|---|
| 4935 | 503 90 gm |
|---|
| 4936 | 0 fs |
|---|
| 4937 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4938 | 10 fz |
|---|
| 4939 | 2 F /|______Times-Roman fnt |
|---|
| 4940 | 0.14251 0. 32 0.01425 0.(The item method command is a bit more involved, it is the Unix command that will actually run the)awidthshow |
|---|
| 4941 | 514 90 gm |
|---|
| 4942 | 0.02655 0. 32 0.00265 0.(external program intended. It is one line long, and can be up to 256 characters in length. It can have)awidthshow |
|---|
| 4943 | 525 90 gm |
|---|
| 4944 | -0.02996 0.(embedded variable names \(starting with a '$'\) that will be replaced with appropriate values later on. It can)ashow |
|---|
| 4945 | 536 90 gm |
|---|
| 4946 | -0.00277 0.(consist of multiple Unix commands separated by semi-colons \(;\), and may contain shell scripts and)ashow |
|---|
| 4947 | 547 90 gm |
|---|
| 4948 | 0.00350 0. 32 0.00035 0.(background processes as well as simple command names. Examples will be given later.)awidthshow |
|---|
| 4949 | 569 90 gm |
|---|
| 4950 | -0.07740 0.(The keywords for phase two are:)ashow |
|---|
| 4951 | 591 90 gm |
|---|
| 4952 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4953 | 7 fz |
|---|
| 4954 | 2 F /|______Courier fnt |
|---|
| 4955 | -0.19900 0.(arg:)ashow |
|---|
| 4956 | 2 fs |
|---|
| 4957 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4958 | 2 F /|______Courier-Oblique fnt |
|---|
| 4959 | -0.20848 0.(argument_variable_name)ashow |
|---|
| 4960 | 591 342 gm |
|---|
| 4961 | 0 fs |
|---|
| 4962 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4963 | 10 fz |
|---|
| 4964 | 2 F /|______Times-Roman fnt |
|---|
| 4965 | 0.07934 0. 32 0.00793 0.(Name of this variable. It will appear)awidthshow |
|---|
| 4966 | 602 342 gm |
|---|
| 4967 | 0.09628 0. 32 0.00962 0.(in the itemmethod: line with a dollar)awidthshow |
|---|
| 4968 | 613 342 gm |
|---|
| 4969 | 0.35354 0. 32 0.03535 0.(sign \($\) in front of it.)awidthshow |
|---|
| 4970 | 624 90 gm |
|---|
| 4971 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4972 | 7 fz |
|---|
| 4973 | 2 F /|______Courier fnt |
|---|
| 4974 | -0.19900 0.(argtype:)ashow |
|---|
| 4975 | 2 fs |
|---|
| 4976 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4977 | 2 F /|______Courier-Oblique fnt |
|---|
| 4978 | -0.20503 0.(slider,chooser,choice_menu or text)ashow |
|---|
| 4979 | 624 342 gm |
|---|
| 4980 | 0 fs |
|---|
| 4981 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4982 | 10 fz |
|---|
| 4983 | 2 F /|______Times-Roman fnt |
|---|
| 4984 | -0.02027 0.(The type of graphic object)ashow |
|---|
| 4985 | 635 342 gm |
|---|
| 4986 | -0.00474 0.(representing this argument.)ashow |
|---|
| 4987 | 657 90 gm |
|---|
| 4988 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 4989 | 7 fz |
|---|
| 4990 | 2 F /|______Courier fnt |
|---|
| 4991 | -0.19900 0.(arglabel:)ashow |
|---|
| 4992 | 2 fs |
|---|
| 4993 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 4994 | 2 F /|______Courier-Oblique fnt |
|---|
| 4995 | -0.21144 0.(descriptive label)ashow |
|---|
| 4996 | 657 342 gm |
|---|
| 4997 | 0 fs |
|---|
| 4998 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 4999 | 10 fz |
|---|
| 5000 | 2 F /|______Times-Roman fnt |
|---|
| 5001 | 0.07995 0. 32 0.00799 0.(A short description of what this)awidthshow |
|---|
| 5002 | 668 342 gm |
|---|
| 5003 | -0.09936 0.(argument represents)ashow |
|---|
| 5004 | 690 90 gm |
|---|
| 5005 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5006 | 7 fz |
|---|
| 5007 | 2 F /|______Courier fnt |
|---|
| 5008 | -0.19900 0.(argmin:)ashow |
|---|
| 5009 | 2 fs |
|---|
| 5010 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5011 | 2 F /|______Courier-Oblique fnt |
|---|
| 5012 | -0.20805 0.(minimum_value \(integer\))ashow |
|---|
| 5013 | 690 342 gm |
|---|
| 5014 | 0 fs |
|---|
| 5015 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5016 | 10 fz |
|---|
| 5017 | 2 F /|______Times-Roman fnt |
|---|
| 5018 | -0.11270 0.(Used for sliders.)ashow |
|---|
| 5019 | 712 90 gm |
|---|
| 5020 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5021 | 7 fz |
|---|
| 5022 | 2 F /|______Courier fnt |
|---|
| 5023 | -0.19900 0.(argmax:)ashow |
|---|
| 5024 | 2 fs |
|---|
| 5025 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5026 | 2 F /|______Courier-Oblique fnt |
|---|
| 5027 | -0.20805 0.(maximum_value \(integer\))ashow |
|---|
| 5028 | 712 342 gm |
|---|
| 5029 | 0 fs |
|---|
| 5030 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5031 | 10 fz |
|---|
| 5032 | 2 F /|______Times-Roman fnt |
|---|
| 5033 | -0.11270 0.(Used for sliders.)ashow |
|---|
| 5034 | F T cp |
|---|
| 5035 | %%Page: ? 18 |
|---|
| 5036 | op |
|---|
| 5037 | 31 30 xl |
|---|
| 5038 | 1 1 pen |
|---|
| 5039 | 753 90 gm |
|---|
| 5040 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5041 | 1 setTxMode |
|---|
| 5042 | 0 fs |
|---|
| 5043 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5044 | 7 fz |
|---|
| 5045 | 2 F /|______Times-Roman fnt |
|---|
| 5046 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5047 | 753 300 gm |
|---|
| 5048 | 12 fz |
|---|
| 5049 | 2 F /|______Times-Roman fnt |
|---|
| 5050 | (18)show |
|---|
| 5051 | 92 90 gm |
|---|
| 5052 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5053 | 7 fz |
|---|
| 5054 | 2 F /|______Courier fnt |
|---|
| 5055 | -0.19900 0.(argvalue:)ashow |
|---|
| 5056 | 2 fs |
|---|
| 5057 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5058 | 2 F /|______Courier-Oblique fnt |
|---|
| 5059 | -0.20805 0.(default_value \(integer\))ashow |
|---|
| 5060 | 92 342 gm |
|---|
| 5061 | 0 fs |
|---|
| 5062 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5063 | 10 fz |
|---|
| 5064 | 2 F /|______Times-Roman fnt |
|---|
| 5065 | -0.00714 0.(It is the numeric value associated with)ashow |
|---|
| 5066 | 103 342 gm |
|---|
| 5067 | -0.05737 0.(sliders or the default choice in)ashow |
|---|
| 5068 | 114 342 gm |
|---|
| 5069 | -0.03404 0.(choosers, choice_menus, and choice_lists)ashow |
|---|
| 5070 | 125 342 gm |
|---|
| 5071 | 0.10894 0. 32 0.01089 0.(\(the first choice is 0, the second is 1 etc.\))awidthshow |
|---|
| 5072 | 147 90 gm |
|---|
| 5073 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5074 | 7 fz |
|---|
| 5075 | 2 F /|______Courier fnt |
|---|
| 5076 | -0.19900 0.(argtext:)ashow |
|---|
| 5077 | 2 fs |
|---|
| 5078 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5079 | 2 F /|______Courier-Oblique fnt |
|---|
| 5080 | -0.21559 0.(default value)ashow |
|---|
| 5081 | 147 342 gm |
|---|
| 5082 | 0 fs |
|---|
| 5083 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5084 | 10 fz |
|---|
| 5085 | 2 F /|______Times-Roman fnt |
|---|
| 5086 | -0.07046 0.(Used for text fields.)ashow |
|---|
| 5087 | 169 90 gm |
|---|
| 5088 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5089 | 7 fz |
|---|
| 5090 | 2 F /|______Courier fnt |
|---|
| 5091 | -0.19900 0.(argchoice:)ashow |
|---|
| 5092 | 2 fs |
|---|
| 5093 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5094 | 2 F /|______Courier-Oblique fnt |
|---|
| 5095 | -0.19900 0.(displayed value)ashow |
|---|
| 5096 | 0 fs |
|---|
| 5097 | 2 F /|______Courier fnt |
|---|
| 5098 | -0.19900 0.(:)ashow |
|---|
| 5099 | 2 fs |
|---|
| 5100 | 2 F /|______Courier-Oblique fnt |
|---|
| 5101 | -0.21710 0.(passed value)ashow |
|---|
| 5102 | 169 342 gm |
|---|
| 5103 | 0 fs |
|---|
| 5104 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5105 | 10 fz |
|---|
| 5106 | 2 F /|______Times-Roman fnt |
|---|
| 5107 | -0.15618 0.(Used for choosers and)ashow |
|---|
| 5108 | 180 342 gm |
|---|
| 5109 | 0.10101 0. 32 0.01010 0.(choice_menus. The first value is)awidthshow |
|---|
| 5110 | 191 342 gm |
|---|
| 5111 | -0.12577 0.(displayed on screen, and the second)ashow |
|---|
| 5112 | 202 342 gm |
|---|
| 5113 | -0.00753 0.(value is passed to the itemmethod)ashow |
|---|
| 5114 | 213 342 gm |
|---|
| 5115 | 0.12620 0.(line.)ashow |
|---|
| 5116 | 235 90 gm |
|---|
| 5117 | -0.06112 0.(The keywords for phase three are as follows:)ashow |
|---|
| 5118 | 257 90 gm |
|---|
| 5119 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5120 | 7 fz |
|---|
| 5121 | 2 F /|______Courier fnt |
|---|
| 5122 | -0.19900 0.(in:)ashow |
|---|
| 5123 | 2 fs |
|---|
| 5124 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5125 | 2 F /|______Courier-Oblique fnt |
|---|
| 5126 | -0.19900 0.(input_file)ashow |
|---|
| 5127 | 0 fs |
|---|
| 5128 | 2 F /|______Courier fnt |
|---|
| 5129 | ( )show |
|---|
| 5130 | 257 342 gm |
|---|
| 5131 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5132 | 10 fz |
|---|
| 5133 | 2 F /|______Times-Roman fnt |
|---|
| 5134 | 0.07873 0. 32 0.00787 0.(GDE will replace this name with a)awidthshow |
|---|
| 5135 | 268 342 gm |
|---|
| 5136 | -0.12794 0.(randomly generated temporary file)ashow |
|---|
| 5137 | 279 342 gm |
|---|
| 5138 | (name. It will then write the selected)show |
|---|
| 5139 | 290 342 gm |
|---|
| 5140 | 0.24902 0. 32 0.02490 0.(data out to this file.)awidthshow |
|---|
| 5141 | 312 90 gm |
|---|
| 5142 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5143 | 7 fz |
|---|
| 5144 | 2 F /|______Courier fnt |
|---|
| 5145 | -0.19900 0.(informat:)ashow |
|---|
| 5146 | 2 fs |
|---|
| 5147 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5148 | 2 F /|______Courier-Oblique fnt |
|---|
| 5149 | -0.21890 0.(file_format)ashow |
|---|
| 5150 | 312 342 gm |
|---|
| 5151 | 0 fs |
|---|
| 5152 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5153 | 10 fz |
|---|
| 5154 | 2 F /|______Times-Roman fnt |
|---|
| 5155 | 0.14724 0. 32 0.01472 0.(Write data to this file for input to)awidthshow |
|---|
| 5156 | 323 342 gm |
|---|
| 5157 | 0.33538 0. 32 0.03353 0.(this function. Currently support)awidthshow |
|---|
| 5158 | 334 342 gm |
|---|
| 5159 | -0.05738 0.(values are Genbank, and flat.)ashow |
|---|
| 5160 | 345 90 gm |
|---|
| 5161 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5162 | 7 fz |
|---|
| 5163 | 2 F /|______Courier fnt |
|---|
| 5164 | -0.23217 0.(inmask:)ashow |
|---|
| 5165 | 345 342 gm |
|---|
| 5166 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5167 | 10 fz |
|---|
| 5168 | 2 F /|______Times-Roman fnt |
|---|
| 5169 | -0.05563 0.(This data can be controlled by a)ashow |
|---|
| 5170 | 356 342 gm |
|---|
| 5171 | 0.14770 0. 32 0.01477 0.(selection mask.)awidthshow |
|---|
| 5172 | 378 90 gm |
|---|
| 5173 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5174 | 7 fz |
|---|
| 5175 | 2 F /|______Courier fnt |
|---|
| 5176 | -0.23217 0.(insave:)ashow |
|---|
| 5177 | 378 342 gm |
|---|
| 5178 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5179 | 10 fz |
|---|
| 5180 | 2 F /|______Times-Roman fnt |
|---|
| 5181 | 0.08697 0. 32 0.00869 0.(Do not remove this file after running)awidthshow |
|---|
| 5182 | 389 342 gm |
|---|
| 5183 | 0.19424 0. 32 0.01942 0.(the external function. This is useful)awidthshow |
|---|
| 5184 | 400 342 gm |
|---|
| 5185 | 0.01831 0. 32 0.00183 0.(for functions put in the background.)awidthshow |
|---|
| 5186 | 422 90 gm |
|---|
| 5187 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5188 | 7 fz |
|---|
| 5189 | 2 F /|______Courier fnt |
|---|
| 5190 | -0.19900 0.(out:)ashow |
|---|
| 5191 | 2 fs |
|---|
| 5192 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5193 | 2 F /|______Courier-Oblique fnt |
|---|
| 5194 | -0.21890 0.(output_file)ashow |
|---|
| 5195 | 422 342 gm |
|---|
| 5196 | 0 fs |
|---|
| 5197 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5198 | 10 fz |
|---|
| 5199 | 2 F /|______Times-Roman fnt |
|---|
| 5200 | 0.07873 0. 32 0.00787 0.(GDE will replace this name with a)awidthshow |
|---|
| 5201 | 433 342 gm |
|---|
| 5202 | -0.12794 0.(randomly generated temporary file)ashow |
|---|
| 5203 | 444 342 gm |
|---|
| 5204 | 0.21469 0. 32 0.02146 0.(name. It is up to the external function)awidthshow |
|---|
| 5205 | 455 342 gm |
|---|
| 5206 | 0.36849 0. 32 0.03684 0.(to fill this file with any results that)awidthshow |
|---|
| 5207 | 466 342 gm |
|---|
| 5208 | 0.03570 0. 32 0.00357 0.(might be read back into the GDE.)awidthshow |
|---|
| 5209 | 488 90 gm |
|---|
| 5210 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5211 | 7 fz |
|---|
| 5212 | 2 F /|______Courier fnt |
|---|
| 5213 | -0.19900 0.(outformat:)ashow |
|---|
| 5214 | 2 fs |
|---|
| 5215 | {}mark T /Courier-Oblique /|______Courier-Oblique 0 rf |
|---|
| 5216 | 2 F /|______Courier-Oblique fnt |
|---|
| 5217 | -0.21890 0.(file_format)ashow |
|---|
| 5218 | 488 342 gm |
|---|
| 5219 | 0 fs |
|---|
| 5220 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5221 | 10 fz |
|---|
| 5222 | 2 F /|______Times-Roman fnt |
|---|
| 5223 | 0.18402 0. 32 0.01840 0.(The data in the output file will be in)awidthshow |
|---|
| 5224 | 499 342 gm |
|---|
| 5225 | 0.29846 0. 32 0.02984 0.(this format. Currently support)awidthshow |
|---|
| 5226 | 510 342 gm |
|---|
| 5227 | -0.05863 0.(values are colormask, Genbank, and)ashow |
|---|
| 5228 | 521 342 gm |
|---|
| 5229 | 0.04431 0.(flat.)ashow |
|---|
| 5230 | 543 90 gm |
|---|
| 5231 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5232 | 7 fz |
|---|
| 5233 | 2 F /|______Courier fnt |
|---|
| 5234 | -0.22743 0.(outsave:)ashow |
|---|
| 5235 | 543 342 gm |
|---|
| 5236 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5237 | 10 fz |
|---|
| 5238 | 2 F /|______Times-Roman fnt |
|---|
| 5239 | -0.01464 0.(Do not remove this file after reading.)ashow |
|---|
| 5240 | 554 342 gm |
|---|
| 5241 | 0.03158 0. 32 0.00315 0.(This is useful for background tasks.)awidthshow |
|---|
| 5242 | 576 90 gm |
|---|
| 5243 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5244 | 7 fz |
|---|
| 5245 | 2 F /|______Courier fnt |
|---|
| 5246 | -0.21559 0.(outoverwrite:)ashow |
|---|
| 5247 | 576 342 gm |
|---|
| 5248 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5249 | 10 fz |
|---|
| 5250 | 2 F /|______Times-Roman fnt |
|---|
| 5251 | -0.06021 0.(Overwrite existing sequences in the current)ashow |
|---|
| 5252 | 587 342 gm |
|---|
| 5253 | -0.00816 0.(GDE window. Currently supported with)ashow |
|---|
| 5254 | 598 342 gm |
|---|
| 5255 | -0.03097 0.("gde" format only.)ashow |
|---|
| 5256 | 642 90 gm |
|---|
| 5257 | 0.11749 0. 32 0.01174 0.(Here is a sample dialog box, and it's entry in the .GDEmenus file:)awidthshow |
|---|
| 5258 | F T cp |
|---|
| 5259 | %%Page: ? 19 |
|---|
| 5260 | op |
|---|
| 5261 | 31 30 xl |
|---|
| 5262 | 1 1 pen |
|---|
| 5263 | 753 90 gm |
|---|
| 5264 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5265 | 1 setTxMode |
|---|
| 5266 | 0 fs |
|---|
| 5267 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5268 | 7 fz |
|---|
| 5269 | 2 F /|______Times-Roman fnt |
|---|
| 5270 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5271 | 753 300 gm |
|---|
| 5272 | 12 fz |
|---|
| 5273 | 2 F /|______Times-Roman fnt |
|---|
| 5274 | (19)show |
|---|
| 5275 | 454 408 241 216 th |
|---|
| 5276 | 147 170 gm |
|---|
| 5277 | tu |
|---|
| 5278 | (nc 143 169 312 326 6 rc)kp |
|---|
| 5279 | ts |
|---|
| 5280 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5281 | 8.33332 fz |
|---|
| 5282 | 2 F /|______Courier fnt |
|---|
| 5283 | ( )show |
|---|
| 5284 | 162 170 gm |
|---|
| 5285 | (menu:Test function)show |
|---|
| 5286 | 172 170 gm |
|---|
| 5287 | (item:All capitals)show |
|---|
| 5288 | 177 170 gm |
|---|
| 5289 | (itemmethod:\(tr '[a-z]' '[A-Z]' < INPUT_FILE > )show |
|---|
| 5290 | 182 170 gm |
|---|
| 5291 | (INPUT_FILE.tmp ; mv INPUT_FILE.tmp $SAVE_FILE_NAME ; gde )show |
|---|
| 5292 | 187 170 gm |
|---|
| 5293 | ($SAVE_FILE_NAME -Wx $SIZE ; rm INPUT_FILE\) &)show |
|---|
| 5294 | 197 170 gm |
|---|
| 5295 | (arg:SAVE_FILE_NAME)show |
|---|
| 5296 | 202 170 gm |
|---|
| 5297 | (argtype:text)show |
|---|
| 5298 | 207 170 gm |
|---|
| 5299 | (arglabel:Save converted data as?)show |
|---|
| 5300 | 212 170 gm |
|---|
| 5301 | (argtext:CAPS)show |
|---|
| 5302 | 222 170 gm |
|---|
| 5303 | (arg:SIZE)show |
|---|
| 5304 | 227 170 gm |
|---|
| 5305 | (arglabel:Text size?)show |
|---|
| 5306 | 232 170 gm |
|---|
| 5307 | (argtype:chooser)show |
|---|
| 5308 | 237 170 gm |
|---|
| 5309 | (argvalue:1)show |
|---|
| 5310 | 242 170 gm |
|---|
| 5311 | (argchoice:Small:small)show |
|---|
| 5312 | 247 170 gm |
|---|
| 5313 | (argchoice:Medium:medium)show |
|---|
| 5314 | 252 170 gm |
|---|
| 5315 | (argchoice:Large:large)show |
|---|
| 5316 | 257 170 gm |
|---|
| 5317 | (argchoice:Extra Large:extra_large)show |
|---|
| 5318 | 267 170 gm |
|---|
| 5319 | (in:INPUT_FILE)show |
|---|
| 5320 | 272 170 gm |
|---|
| 5321 | (informat:flat)show |
|---|
| 5322 | 277 170 gm |
|---|
| 5323 | (insave:)show |
|---|
| 5324 | tu |
|---|
| 5325 | 0 0 gm |
|---|
| 5326 | (nc 72 162 313 378 6 rc)kp |
|---|
| 5327 | 64 gr |
|---|
| 5328 | 73 166 141 355 1 rc |
|---|
| 5329 | 0 gr |
|---|
| 5330 | 73.5 166.5 140.5 354.5 0 rc |
|---|
| 5331 | 64 gr |
|---|
| 5332 | 78 174 88 192 11.5 11.5 1 rr |
|---|
| 5333 | 0 gr |
|---|
| 5334 | 78.5 174.5 87.5 191.5 11.5 11.5 0 rr |
|---|
| 5335 | 64 gr |
|---|
| 5336 | 77 171 137 352 1 rc |
|---|
| 5337 | T 181 31.07141 171 77 44 341 58 T 1 db |
|---|
| 5338 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5339 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5340 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5341 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5342 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5343 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5344 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5345 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5346 | 0000000008000000000000004080000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5347 | 0000F04204000007800000004040000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5348 | 0001084404000008400000004040000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5349 | 0002044802000010070B07384020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5350 | 0002045002000010088C88444020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5351 | 0002047002000010008890444020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5352 | 00020448020000100788907C4020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5353 | 0002044402000010088890404020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5354 | 0001084202000008488888444020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5355 | 0000F04202000007874887384020000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5356 | 0000000004000000000000000040000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5357 | 0000000004000000000000000040000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5358 | 0000000008000000000000000080000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5359 | 0100000010000800000000000100000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5360 | 00C0000060000600000000000600000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5361 | 003FFFFF800001FFFFFFFFFFF800000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5362 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5363 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5364 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5365 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5366 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5367 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5368 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5369 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5370 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5371 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5372 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5373 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5374 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5375 | 00000000000000000000000000C00C0000000000000000000000000000000000000000000000000000000000 |
|---|
| 5376 | 03C00000000000000000008000C00C0040000000380000000000000000000000000000000000000000000000 |
|---|
| 5377 | 06600000000000000000018000C00C00C00000004C0000000000000000000000000000000000000000000000 |
|---|
| 5378 | 0603C663C03C786C663C6FE787C07C79F3C03C3E0C0000000000000000000000000000000000000000000000 |
|---|
| 5379 | 070666666066CC7666666D8CCCC0CCCCC6606660180000000000000000000000000000000000000000000000 |
|---|
| 5380 | 03C066666060CC666666718CCCC0CC0CC0600670300000000000000000000000000000000000000000000000 |
|---|
| 5381 | 00E3E347E060CC66347E618FCCC0CC7CC3E03E3C300000000000000000000000000000000000000000000000 |
|---|
| 5382 | 006663460060CC663460618C0CC0CCCCC660660E000000000000000000000000000000000000000000000000 |
|---|
| 5383 | 066661862062CC661862618C4DC0DCCCC6606606300000000000000000000000000000000000000000000000 |
|---|
| 5384 | 03C3B183C03C7866183C60E786C06C7673B03B7C300000000000000000000000000000000000000000000000 |
|---|
| 5385 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5386 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5387 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5388 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5389 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5390 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5391 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5392 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5393 | 01E0C1E1E0000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5394 | 0210C11200000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5395 | 0401211200000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5396 | 0401211300000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5397 | 04012111C0000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5398 | 0403F1E060000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5399 | 0402110020000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5400 | T 181 30 171 108.05261 44 341 57 T 1 db |
|---|
| 5401 | 0401211300000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5402 | 04012111C0000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5403 | 0403F1E060000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5404 | 0402110020000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5405 | 0212110028000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5406 | 01E21103C8000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5407 | 000000001C000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5408 | 000000001C000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5409 | 000000003E000000000000000000000000000000000000000000000000000000100000000000000000000000 |
|---|
| 5410 | 07FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF00000000000000000000000 |
|---|
| 5411 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5412 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5413 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5414 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5415 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5416 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5417 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5418 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5419 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5420 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5421 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5422 | 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
|---|
| 5423 | 000000000000000000000000000000003FFFFFFFFFFFFFFFF000000000000800000000000000000001000000 |
|---|
| 5424 | 0000000000000000000000000000000030000000000000000000000000000800000000000000000001000000 |
|---|
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| 5588 | 118 301 gm |
|---|
| 5589 | 0 gr |
|---|
| 5590 | 118 274 lin |
|---|
| 5591 | 118 239 gm |
|---|
| 5592 | 118 214 lin |
|---|
| 5593 | 130 241 gm |
|---|
| 5594 | 130 275 lin |
|---|
| 5595 | 118 301 gm |
|---|
| 5596 | 118 344 lin |
|---|
| 5597 | 130 214 gm |
|---|
| 5598 | 119 214 lin |
|---|
| 5599 | 78.5 173.5 87.5 192.5 11.5 11.5 0 rr |
|---|
| 5600 | 78.5 196.5 87.5 227.5 11.5 11.5 0 rr |
|---|
| 5601 | 118 275 gm |
|---|
| 5602 | 129 275 lin |
|---|
| 5603 | 129 241 lin |
|---|
| 5604 | 200.5 163.5 223.5 262.5 13.5 13.5 0 rr |
|---|
| 5605 | pr |
|---|
| 5606 | 100 267 pl |
|---|
| 5607 | 98 275 pl |
|---|
| 5608 | 100 275 pl |
|---|
| 5609 | 101 275 pl |
|---|
| 5610 | 100 267 pl |
|---|
| 5611 | 1 ep |
|---|
| 5612 | 100 377 gm |
|---|
| 5613 | 100 275 lin |
|---|
| 5614 | 229.5 163.5 276.5 262.5 13.5 13.5 0 rr |
|---|
| 5615 | 0 0 pen |
|---|
| 5616 | 248 325 gm |
|---|
| 5617 | 248 325 lin |
|---|
| 5618 | nc ct 39 0 put |
|---|
| 5619 | 1 1 pen |
|---|
| 5620 | 248 263 gm |
|---|
| 5621 | bp |
|---|
| 5622 | 248 324 F qi |
|---|
| 5623 | 248 324 qc |
|---|
| 5624 | 248 362 qc |
|---|
| 5625 | 248 362 qc |
|---|
| 5626 | 124 363 qc |
|---|
| 5627 | 124 363 F qq |
|---|
| 5628 | ef |
|---|
| 5629 | 9 ec |
|---|
| 5630 | (nc 72 162 313 378 6 rc)kp |
|---|
| 5631 | pr |
|---|
| 5632 | 124 348 pl |
|---|
| 5633 | 121 356 pl |
|---|
| 5634 | 124 356 pl |
|---|
| 5635 | 125 356 pl |
|---|
| 5636 | 124 348 pl |
|---|
| 5637 | 1 ep |
|---|
| 5638 | 124 357 lin |
|---|
| 5639 | 100 377 gm |
|---|
| 5640 | 214 377 lin |
|---|
| 5641 | 214 263 gm |
|---|
| 5642 | 214 377 lin |
|---|
| 5643 | 322 90 gm |
|---|
| 5644 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5645 | 1 setTxMode |
|---|
| 5646 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5647 | 10 fz |
|---|
| 5648 | 2 F /|______Times-Roman fnt |
|---|
| 5649 | -0.02491 0.(Using the default parameters given in the dialog box, the executed Unix command line would be:)ashow |
|---|
| 5650 | 341 90 gm |
|---|
| 5651 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5652 | 7 fz |
|---|
| 5653 | 2 F /|______Courier fnt |
|---|
| 5654 | -0.20088 0.(\(tr '[a-z]' '[A-Z]' < .gde_001 >.gde_001.tmp ; mv .gde_001.tmp CAPS ; gde CAPS -Wx medium ; rm .gde_001 \) &)ashow |
|---|
| 5655 | 363 90 gm |
|---|
| 5656 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5657 | 10 fz |
|---|
| 5658 | 2 F /|______Times-Roman fnt |
|---|
| 5659 | -0.06463 0.(where )ashow |
|---|
| 5660 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5661 | 7 fz |
|---|
| 5662 | 2 F /|______Courier fnt |
|---|
| 5663 | -0.06048 0.(.gde_001)ashow |
|---|
| 5664 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5665 | 10 fz |
|---|
| 5666 | 2 F /|______Times-Roman fnt |
|---|
| 5667 | -0.05946 0.( is the name of the temporary file generated by the GDE which contains the selected sequences)ashow |
|---|
| 5668 | 374 90 gm |
|---|
| 5669 | 0.09124 0. 32 0.00912 0.(in flat file format. Since the GDE runs this command in the background \('&' at the end\) it is necessary to)awidthshow |
|---|
| 5670 | 385 90 gm |
|---|
| 5671 | (specify the )show |
|---|
| 5672 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5673 | 7 fz |
|---|
| 5674 | 2 F /|______Courier fnt |
|---|
| 5675 | (insave: )show |
|---|
| 5676 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5677 | 10 fz |
|---|
| 5678 | 2 F /|______Times-Roman fnt |
|---|
| 5679 | -0.00428 0.(line, and to remove all temporary files manually. There is no output file specific because)ashow |
|---|
| 5680 | 396 90 gm |
|---|
| 5681 | -0.02909 0.(the data is not loaded back into the current GDE window, but rather a new GDE window is opened on the)ashow |
|---|
| 5682 | 407 90 gm |
|---|
| 5683 | -0.01303 0.(file. A simpler command that reloads the data after conversion might be:)ashow |
|---|
| 5684 | 426 90 gm |
|---|
| 5685 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5686 | 7 fz |
|---|
| 5687 | 2 F /|______Courier fnt |
|---|
| 5688 | -0.21559 0.(item:All caps)ashow |
|---|
| 5689 | 434 90 gm |
|---|
| 5690 | -0.20352 0.(itemmethod:tr '[a-z]' '[A-Z]' <INPUT > OUTPUT)ashow |
|---|
| 5691 | 450 90 gm |
|---|
| 5692 | -0.22743 0.(in:INPUT)ashow |
|---|
| 5693 | 458 90 gm |
|---|
| 5694 | -0.21559 0.(informat:flat)ashow |
|---|
| 5695 | 474 90 gm |
|---|
| 5696 | -0.22111 0.(out:OUTPUT)ashow |
|---|
| 5697 | 482 90 gm |
|---|
| 5698 | -0.21430 0.(outformat:flat)ashow |
|---|
| 5699 | 501 90 gm |
|---|
| 5700 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5701 | 10 fz |
|---|
| 5702 | 2 F /|______Times-Roman fnt |
|---|
| 5703 | 0.06103 0. 32 0.00610 0.(In this example, no arguments are specified, and so no dialog box will appear. The command is not run in)awidthshow |
|---|
| 5704 | 512 90 gm |
|---|
| 5705 | -0.03242 0.(the background, so the GDE can clean up after itself automatically. The converted sequence is automatically)ashow |
|---|
| 5706 | 523 90 gm |
|---|
| 5707 | -0.07383 0.(loaded back into the current GDE window.)ashow |
|---|
| 5708 | 545 90 gm |
|---|
| 5709 | 0.02014 0. 32 0.00201 0.(In general, the easiest type of program to integrate into the GDE is a program completely driven from a)awidthshow |
|---|
| 5710 | 556 90 gm |
|---|
| 5711 | -0.00051 0.(Unix command line. Interactive programs can be tied in \(MFOLD for example\), however shell scripts must)ashow |
|---|
| 5712 | 567 90 gm |
|---|
| 5713 | -0.01737 0.(be used to drive the parameter entry for these programs. Programs of the form:)ashow |
|---|
| 5714 | 586 90 gm |
|---|
| 5715 | {}mark T /Courier /|______Courier 0 rf |
|---|
| 5716 | 7 fz |
|---|
| 5717 | 2 F /|______Courier fnt |
|---|
| 5718 | -0.20149 0.(program_name -a1 argument1 -a2 arguement2 -f inputfile -er errorfile > outputfile)ashow |
|---|
| 5719 | 608 90 gm |
|---|
| 5720 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5721 | 10 fz |
|---|
| 5722 | 2 F /|______Times-Roman fnt |
|---|
| 5723 | 0.06240 0. 32 0.00624 0.(can be specified in the .GDEmenus file directly. As this is the general form of most one Unix commands,)awidthshow |
|---|
| 5724 | 619 90 gm |
|---|
| 5725 | 0.06774 0. 32 0.00677 0.(these tend to be simpler to implement under the GDE.)awidthshow |
|---|
| 5726 | 641 90 gm |
|---|
| 5727 | 0.07995 0. 32 0.00799 0.(As functions grow in complexity, they may begin to need a user interface of their own. In these cases, the)awidthshow |
|---|
| 5728 | 652 90 gm |
|---|
| 5729 | -0.01388 0.(command line calling arguments are still necessary in order to allow the GDE to hand them the appropriate)ashow |
|---|
| 5730 | 663 90 gm |
|---|
| 5731 | -0.02767 0.(data, and possible retrieve results after some external manipulation.)ashow |
|---|
| 5732 | F T cp |
|---|
| 5733 | %%Page: ? 20 |
|---|
| 5734 | op |
|---|
| 5735 | 31 30 xl |
|---|
| 5736 | 1 1 pen |
|---|
| 5737 | 753 90 gm |
|---|
| 5738 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5739 | 1 setTxMode |
|---|
| 5740 | 0 fs |
|---|
| 5741 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5742 | 7 fz |
|---|
| 5743 | 2 F /|______Times-Roman fnt |
|---|
| 5744 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5745 | 753 300 gm |
|---|
| 5746 | 12 fz |
|---|
| 5747 | 2 F /|______Times-Roman fnt |
|---|
| 5748 | (20)show |
|---|
| 5749 | 84 90 gm |
|---|
| 5750 | 14 fz |
|---|
| 5751 | 2 F /|______Times-Roman fnt |
|---|
| 5752 | 0.49774 0. 32 0.04977 0.(Appendix C, External functions)awidthshow |
|---|
| 5753 | 107 90 gm |
|---|
| 5754 | 10 fz |
|---|
| 5755 | 2 F /|______Times-Roman fnt |
|---|
| 5756 | 0.08163 0. 32 0.00816 0.(ClustalV - Cluster multiple sequence alignment)awidthshow |
|---|
| 5757 | 129 90 gm |
|---|
| 5758 | 0.30380 0. 32 0.03038 0.(Author: Des Higgins.)awidthshow |
|---|
| 5759 | 151 90 gm |
|---|
| 5760 | -0.25508 0.(Reference:)ashow |
|---|
| 5761 | 151 162 gm |
|---|
| 5762 | 0.14328 0. 32 0.01432 0.(Higgins,D.G. Bleasby,A.J. and Fuchs,R. \(1991\) CLUSTAL V: improved software)awidthshow |
|---|
| 5763 | 162 162 gm |
|---|
| 5764 | 0.13442 0. 32 0.01344 0.(for multiple sequence alignment. ms. submitted to CABIOS)awidthshow |
|---|
| 5765 | 183 90 gm |
|---|
| 5766 | -0.11924 0.(Parameters:)ashow |
|---|
| 5767 | 194 162 gm |
|---|
| 5768 | -0.07839 0.(k-tuple pairwise search)ashow |
|---|
| 5769 | 194 270 gm |
|---|
| 5770 | -0.07196 0.(Word size for pairwise comparisons)ashow |
|---|
| 5771 | 205 162 gm |
|---|
| 5772 | -0.14807 0.(Window size)ashow |
|---|
| 5773 | 205 270 gm |
|---|
| 5774 | 0.07278 0. 32 0.00727 0.(Smaller values give faster alignments,)awidthshow |
|---|
| 5775 | 216 270 gm |
|---|
| 5776 | -0.03422 0.(larger values are more sensitive.)ashow |
|---|
| 5777 | 227 162 gm |
|---|
| 5778 | -0.05999 0.(Transitions weighted)ashow |
|---|
| 5779 | 227 270 gm |
|---|
| 5780 | 0.19729 0. 32 0.01972 0.(Can weight transitions twice as high as)awidthshow |
|---|
| 5781 | 238 270 gm |
|---|
| 5782 | -0.01446 0.(transversions \(DNA only\).)ashow |
|---|
| 5783 | 249 162 gm |
|---|
| 5784 | -0.04051 0.(Fixed gap penalty)ashow |
|---|
| 5785 | 249 270 gm |
|---|
| 5786 | 0.06027 0. 32 0.00602 0.(Gap insertion penalty, lower value, more gaps)awidthshow |
|---|
| 5787 | 260 162 gm |
|---|
| 5788 | 0.20385 0. 32 0.02038 0.(Floating gap penalty)awidthshow |
|---|
| 5789 | 260 270 gm |
|---|
| 5790 | 0.02777 0. 32 0.00277 0.(Gap extension penalty, lower value, longer gaps)awidthshow |
|---|
| 5791 | 304 90 gm |
|---|
| 5792 | 0.11117 0.(Comments:)ashow |
|---|
| 5793 | 315 162 gm |
|---|
| 5794 | -0.01083 0.(ClustalV is a directed multiple sequence alignment algorithm that)ashow |
|---|
| 5795 | 326 162 gm |
|---|
| 5796 | 0.06652 0. 32 0.00665 0.(aligns a set of sequences based on their level of similarity. It first)awidthshow |
|---|
| 5797 | 337 162 gm |
|---|
| 5798 | 0.05584 0. 32 0.00558 0.(uses a Lipman Peasron pairwise similarity scoring to find "clusters")awidthshow |
|---|
| 5799 | 348 162 gm |
|---|
| 5800 | -0.06562 0.(of similar sequences, and pre-aligns those sequences. It then adds)ashow |
|---|
| 5801 | 359 162 gm |
|---|
| 5802 | 0.03463 0. 32 0.00346 0.(other sequences to the alignment in the order of their similarity so as)awidthshow |
|---|
| 5803 | 370 162 gm |
|---|
| 5804 | -0.02696 0.(to produce the cleanest alignment.)ashow |
|---|
| 5805 | 392 162 gm |
|---|
| 5806 | 0.09170 0. 32 0.00917 0.(Warning: ClustalV only uses unambiguous character codes. It will also)awidthshow |
|---|
| 5807 | 403 162 gm |
|---|
| 5808 | 0.04348 0. 32 0.00434 0.(convert all sequences to upper case in the process of aligning. Clustal)awidthshow |
|---|
| 5809 | 414 162 gm |
|---|
| 5810 | 0.04180 0. 32 0.00418 0.(does not pass back comments, author etc. Be sure to keep copies of your)awidthshow |
|---|
| 5811 | 425 162 gm |
|---|
| 5812 | 0.15106 0. 32 0.01510 0.(sequences if you do not wish to lose this information.)awidthshow |
|---|
| 5813 | F T cp |
|---|
| 5814 | %%Page: ? 21 |
|---|
| 5815 | op |
|---|
| 5816 | 31 30 xl |
|---|
| 5817 | 1 1 pen |
|---|
| 5818 | 753 90 gm |
|---|
| 5819 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5820 | 1 setTxMode |
|---|
| 5821 | 0 fs |
|---|
| 5822 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5823 | 7 fz |
|---|
| 5824 | 2 F /|______Times-Roman fnt |
|---|
| 5825 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5826 | 753 300 gm |
|---|
| 5827 | 12 fz |
|---|
| 5828 | 2 F /|______Times-Roman fnt |
|---|
| 5829 | (21)show |
|---|
| 5830 | 81 90 gm |
|---|
| 5831 | 10 fz |
|---|
| 5832 | 2 F /|______Times-Roman fnt |
|---|
| 5833 | -0.08074 0.(MFOLD - RNA secondary prediction)ashow |
|---|
| 5834 | 103 90 gm |
|---|
| 5835 | -0.03694 0.(Author: Michael Zuker)ashow |
|---|
| 5836 | 125 90 gm |
|---|
| 5837 | -0.17959 0.(Reference: )ashow |
|---|
| 5838 | 125 162 gm |
|---|
| 5839 | 0.13900 0. 32 0.01390 0.(M. Zuker)awidthshow |
|---|
| 5840 | 136 162 gm |
|---|
| 5841 | 0.27359 0. 32 0.02735 0.(On Finding All Suboptimal Foldings of an RNA Molecule.)awidthshow |
|---|
| 5842 | 147 162 gm |
|---|
| 5843 | 0.16525 0. 32 0.01652 0.(Science, 244, 48-52, \(1989\))awidthshow |
|---|
| 5844 | 169 162 gm |
|---|
| 5845 | 0.12847 0. 32 0.01284 0.(J. A. Jaeger, D. H. Turner and M. Zuker)awidthshow |
|---|
| 5846 | 180 162 gm |
|---|
| 5847 | -0.06132 0.(Improved Predictions of Secondary Structures for RNA.)ashow |
|---|
| 5848 | 191 162 gm |
|---|
| 5849 | 0.25482 0. 32 0.02548 0.(Proc. Natl. Acad. Sci. USA, BIOCHEMISTRY, 86, 7706-7710, \(1989\))awidthshow |
|---|
| 5850 | 213 162 gm |
|---|
| 5851 | 0.12847 0. 32 0.01284 0.(J. A. Jaeger, D. H. Turner and M. Zuker)awidthshow |
|---|
| 5852 | 224 162 gm |
|---|
| 5853 | -0.01690 0.(Predicting Optimal and Suboptimal Secondary Structure for RNA.)ashow |
|---|
| 5854 | 235 162 gm |
|---|
| 5855 | 0.13473 0. 32 0.01347 0.(in "Molecular Evolution: Computer Analysis of Protein and)awidthshow |
|---|
| 5856 | 246 162 gm |
|---|
| 5857 | (Nucleic Acid Sequences", R. F. Doolittle ed.)show |
|---|
| 5858 | 257 162 gm |
|---|
| 5859 | 0.18035 0. 32 0.01803 0.(Methods in Enzymology, 183, 281-306 \(1989\))awidthshow |
|---|
| 5860 | 279 90 gm |
|---|
| 5861 | -0.11924 0.(Parameters:)ashow |
|---|
| 5862 | 290 162 gm |
|---|
| 5863 | -0.11352 0.(Linear/circular RNA fold)ashow |
|---|
| 5864 | 301 162 gm |
|---|
| 5865 | 0.25527 0. 32 0.02552 0.(ct File to save results)awidthshow |
|---|
| 5866 | 323 90 gm |
|---|
| 5867 | 0.11117 0.(Comments:)ashow |
|---|
| 5868 | 334 162 gm |
|---|
| 5869 | 0.06652 0. 32 0.00665 0.(MFOLD passes it's output to a program Zuk_to_gen that translates the secondary)awidthshow |
|---|
| 5870 | 345 162 gm |
|---|
| 5871 | -0.01971 0.(structure prediction to a nested bracket \([]\) notation. This notation can then be used)ashow |
|---|
| 5872 | 356 162 gm |
|---|
| 5873 | -0.00996 0.(in the Highlight Helix, and Draw Secondary structure \(LoopTool\) functions.)ashow |
|---|
| 5874 | 378 162 gm |
|---|
| 5875 | -0.01683 0.(MFOLD currently does not support much in the way of additional parameters.)ashow |
|---|
| 5876 | 389 162 gm |
|---|
| 5877 | -0.04089 0.(We hope to have all additional parameters available soon.)ashow |
|---|
| 5878 | F T cp |
|---|
| 5879 | %%Page: ? 22 |
|---|
| 5880 | op |
|---|
| 5881 | 31 30 xl |
|---|
| 5882 | 1 1 pen |
|---|
| 5883 | 753 90 gm |
|---|
| 5884 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5885 | 1 setTxMode |
|---|
| 5886 | 0 fs |
|---|
| 5887 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5888 | 7 fz |
|---|
| 5889 | 2 F /|______Times-Roman fnt |
|---|
| 5890 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5891 | 753 300 gm |
|---|
| 5892 | 12 fz |
|---|
| 5893 | 2 F /|______Times-Roman fnt |
|---|
| 5894 | (22)show |
|---|
| 5895 | 92 90 gm |
|---|
| 5896 | 10 fz |
|---|
| 5897 | 2 F /|______Times-Roman fnt |
|---|
| 5898 | -0.01799 0.(Blast - Basic Local Alignment Search Tool)ashow |
|---|
| 5899 | 114 90 gm |
|---|
| 5900 | -0.25508 0.(Reference:)ashow |
|---|
| 5901 | 125 162 gm |
|---|
| 5902 | 0.16143 0. 32 0.01614 0.(Karlin, Samuel and Stephen F. Altschul \(1990\). Methods for)awidthshow |
|---|
| 5903 | 136 162 gm |
|---|
| 5904 | -0.04147 0.(assessing the statistical significance of molecular sequence)ashow |
|---|
| 5905 | 147 162 gm |
|---|
| 5906 | -0.01135 0.(features by using general scoring schemes, Proc. Natl. Acad.)ashow |
|---|
| 5907 | 158 162 gm |
|---|
| 5908 | 0.51742 0. 32 0.05174 0.(Sci. USA 87:2264-2268.)awidthshow |
|---|
| 5909 | 180 90 gm |
|---|
| 5910 | 0.46295 0. 32 0.04629 0.( )awidthshow |
|---|
| 5911 | 180 162 gm |
|---|
| 5912 | 0.27801 0. 32 0.02780 0.(Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.)awidthshow |
|---|
| 5913 | 191 90 gm |
|---|
| 5914 | 0.46295 0. 32 0.04629 0.( )awidthshow |
|---|
| 5915 | 191 162 gm |
|---|
| 5916 | 0.10040 0. 32 0.01004 0.(Myers, and David J. Lipman \(1990\). Basic local alignment)awidthshow |
|---|
| 5917 | 202 90 gm |
|---|
| 5918 | 0.46295 0. 32 0.04629 0.( )awidthshow |
|---|
| 5919 | 202 162 gm |
|---|
| 5920 | 0.45684 0. 32 0.04568 0.(search tool, J. Mol. Biol. 215:403-410.)awidthshow |
|---|
| 5921 | 224 90 gm |
|---|
| 5922 | 0.46875 0. 32 0.04687 0.( )awidthshow |
|---|
| 5923 | 224 162 gm |
|---|
| 5924 | 0.40649 0. 32 0.04064 0.(Altschul, Stephen F. \(1991\). Amino acid substitution)awidthshow |
|---|
| 5925 | 235 90 gm |
|---|
| 5926 | 0.46875 0. 32 0.04687 0.( )awidthshow |
|---|
| 5927 | 235 162 gm |
|---|
| 5928 | 0.10742 0. 32 0.01074 0.(matrices from an information theoretic perspective. J. Mol.)awidthshow |
|---|
| 5929 | 246 90 gm |
|---|
| 5930 | 0.46295 0. 32 0.04629 0.( )awidthshow |
|---|
| 5931 | 246 162 gm |
|---|
| 5932 | 0.43884 0. 32 0.04388 0.(Biol. 219:555-565.)awidthshow |
|---|
| 5933 | 290 90 gm |
|---|
| 5934 | -0.11924 0.(Parameters:)ashow |
|---|
| 5935 | 301 162 gm |
|---|
| 5936 | -0.13816 0.(Which Database)ashow |
|---|
| 5937 | 301 270 gm |
|---|
| 5938 | -0.09788 0.(Which nucleic or amino acid database)ashow |
|---|
| 5939 | 312 270 gm |
|---|
| 5940 | -0.03448 0.(to search.)ashow |
|---|
| 5941 | 334 162 gm |
|---|
| 5942 | -0.18505 0.(Word Size)ashow |
|---|
| 5943 | 334 270 gm |
|---|
| 5944 | 0.17608 0. 32 0.01760 0.(Length of initial hit. after locating a match of)awidthshow |
|---|
| 5945 | 345 270 gm |
|---|
| 5946 | 0.27908 0. 32 0.02790 0.(this length, alignment extension is attempted.)awidthshow |
|---|
| 5947 | 356 126 gm |
|---|
| 5948 | -0.11082 0.(Blastn)ashow |
|---|
| 5949 | 367 162 gm |
|---|
| 5950 | -0.11381 0.(Match score)ashow |
|---|
| 5951 | 367 270 gm |
|---|
| 5952 | -0.03680 0.(Score for matches in secondary alignment extension)ashow |
|---|
| 5953 | 378 162 gm |
|---|
| 5954 | -0.04492 0.(Mismatch score)ashow |
|---|
| 5955 | 378 270 gm |
|---|
| 5956 | -0.02404 0.(Score for mismatches in secondary alignment extension)ashow |
|---|
| 5957 | 400 126 gm |
|---|
| 5958 | 0.49514 0. 32 0.04951 0.(Blastx, tblastn, blastp, blast3)awidthshow |
|---|
| 5959 | 411 162 gm |
|---|
| 5960 | 0.69580 0. 32 0.06958 0.(Substitution Matrix)awidthshow |
|---|
| 5961 | 411 270 gm |
|---|
| 5962 | 0.38192 0. 32 0.03819 0.(PAM120 or PAM250)awidthshow |
|---|
| 5963 | 444 126 gm |
|---|
| 5964 | 0.11117 0.(Comments:)ashow |
|---|
| 5965 | 444 198 gm |
|---|
| 5966 | -0.01263 0.(The report is loaded into a text editor. This should be saved as a new file)ashow |
|---|
| 5967 | 455 198 gm |
|---|
| 5968 | -0.01432 0.(as the default file is removed after execution. The latest version of blast can)ashow |
|---|
| 5969 | 466 198 gm |
|---|
| 5970 | 0.30914 0. 32 0.03091 0.(be obtained via anonymous ftp to ncbi.nlm.nih.gov.)awidthshow |
|---|
| 5971 | F T cp |
|---|
| 5972 | %%Page: ? 23 |
|---|
| 5973 | op |
|---|
| 5974 | 31 30 xl |
|---|
| 5975 | 1 1 pen |
|---|
| 5976 | 753 90 gm |
|---|
| 5977 | (nc 31 30 761 582 6 rc)kp |
|---|
| 5978 | 1 setTxMode |
|---|
| 5979 | 0 fs |
|---|
| 5980 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 5981 | 7 fz |
|---|
| 5982 | 2 F /|______Times-Roman fnt |
|---|
| 5983 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 5984 | 753 300 gm |
|---|
| 5985 | 12 fz |
|---|
| 5986 | 2 F /|______Times-Roman fnt |
|---|
| 5987 | (23)show |
|---|
| 5988 | 81 90 gm |
|---|
| 5989 | 10 fz |
|---|
| 5990 | 2 F /|______Times-Roman fnt |
|---|
| 5991 | 0.14083 0. 32 0.01408 0.(FastA - Similarity search)awidthshow |
|---|
| 5992 | 103 126 gm |
|---|
| 5993 | -0.25508 0.(Reference:)ashow |
|---|
| 5994 | 114 162 gm |
|---|
| 5995 | 0.31677 0. 32 0.03167 0.(W. R. Pearson and D. J. Lipman \(1988\),)awidthshow |
|---|
| 5996 | 125 162 gm |
|---|
| 5997 | -0.00869 0.("Improved Tools for Biological Sequence Analysis", PNAS 85:2444-2448)ashow |
|---|
| 5998 | 147 162 gm |
|---|
| 5999 | 0.01358 0. 32 0.00135 0.(W. R. Pearson \(1990\) "Rapid and Sensitive Sequence)awidthshow |
|---|
| 6000 | 158 162 gm |
|---|
| 6001 | 0.26550 0. 32 0.02655 0.(Comparison with FASTP and FASTA" Methods in Enzymology 183:63-98)awidthshow |
|---|
| 6002 | 180 126 gm |
|---|
| 6003 | -0.11924 0.(Parameters:)ashow |
|---|
| 6004 | 191 162 gm |
|---|
| 6005 | -0.23434 0.(Database)ashow |
|---|
| 6006 | 191 306 gm |
|---|
| 6007 | -0.12551 0.(Which database to search)ashow |
|---|
| 6008 | 202 162 gm |
|---|
| 6009 | 0.05493 0. 32 0.00549 0.(Number of alignments to report)awidthshow |
|---|
| 6010 | 213 162 gm |
|---|
| 6011 | (SMATRIX)show |
|---|
| 6012 | 213 306 gm |
|---|
| 6013 | 0.26260 0. 32 0.02626 0.(Which similarity matrix to use)awidthshow |
|---|
| 6014 | 246 126 gm |
|---|
| 6015 | 0.11117 0.(Comments:)ashow |
|---|
| 6016 | 257 90 gm |
|---|
| 6017 | 0.47622 0. 32 0.04762 0.( )awidthshow |
|---|
| 6018 | 257 162 gm |
|---|
| 6019 | -0.05303 0.(The FastA package includes several additional programs for pairwise alignment.)ashow |
|---|
| 6020 | 268 162 gm |
|---|
| 6021 | -0.00224 0.(We have only included a bare bones link to FastA. We hope to include a more)ashow |
|---|
| 6022 | 279 162 gm |
|---|
| 6023 | -0.00607 0.(complete setup for the actual 2.2 release.)ashow |
|---|
| 6024 | F T cp |
|---|
| 6025 | %%Page: ? 24 |
|---|
| 6026 | op |
|---|
| 6027 | 31 30 xl |
|---|
| 6028 | 1 1 pen |
|---|
| 6029 | 753 90 gm |
|---|
| 6030 | (nc 31 30 761 582 6 rc)kp |
|---|
| 6031 | 1 setTxMode |
|---|
| 6032 | 0 fs |
|---|
| 6033 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 6034 | 7 fz |
|---|
| 6035 | 2 F /|______Times-Roman fnt |
|---|
| 6036 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 6037 | 753 300 gm |
|---|
| 6038 | 12 fz |
|---|
| 6039 | 2 F /|______Times-Roman fnt |
|---|
| 6040 | (24)show |
|---|
| 6041 | 81 90 gm |
|---|
| 6042 | 10 fz |
|---|
| 6043 | 2 F /|______Times-Roman fnt |
|---|
| 6044 | 0.38360 0. 32 0.03836 0.(Assemble Contigs - CAP Contig Assembly Program)awidthshow |
|---|
| 6045 | 103 126 gm |
|---|
| 6046 | -0.04878 0.(Author - Xiaoqiu Huang)ashow |
|---|
| 6047 | 114 162 gm |
|---|
| 6048 | -0.03823 0.(Department of Computer Science)ashow |
|---|
| 6049 | 125 162 gm |
|---|
| 6050 | -0.02279 0.(Michigan Technological University)ashow |
|---|
| 6051 | 136 162 gm |
|---|
| 6052 | 0.34759 0. 32 0.03475 0.(Houghton, MI 49931)awidthshow |
|---|
| 6053 | 147 162 gm |
|---|
| 6054 | -0.01989 0.(E-mail: huang@cs.mtu.edu)ashow |
|---|
| 6055 | 169 162 gm |
|---|
| 6056 | 0.31494 0. 32 0.03149 0.(Minor modifications for I/O by S. Smith)awidthshow |
|---|
| 6057 | 191 126 gm |
|---|
| 6058 | -0.23449 0.(Reference -)ashow |
|---|
| 6059 | 202 162 gm |
|---|
| 6060 | 0.05538 0. 32 0.00553 0.("A Contig Assembly Program Based on Sensitive Detection of)awidthshow |
|---|
| 6061 | 213 90 gm |
|---|
| 6062 | ( )show |
|---|
| 6063 | 213 162 gm |
|---|
| 6064 | 0.00946 0. 32 0.00094 0.(Fragment Overlaps" \(submitted to Genomics, 1991\))awidthshow |
|---|
| 6065 | 235 126 gm |
|---|
| 6066 | -0.11924 0.(Parameters:)ashow |
|---|
| 6067 | 246 162 gm |
|---|
| 6068 | 0.21423 0. 32 0.02142 0.(Minimum overlap)awidthshow |
|---|
| 6069 | 246 306 gm |
|---|
| 6070 | -0.11988 0.(Number of bases required for overlap)ashow |
|---|
| 6071 | 257 162 gm |
|---|
| 6072 | -0.01672 0.(Percent match within overlap)ashow |
|---|
| 6073 | 257 306 gm |
|---|
| 6074 | -0.10456 0.(Percentage match required in the overlap)ashow |
|---|
| 6075 | 268 306 gm |
|---|
| 6076 | -0.07734 0.(region before merge is alowwed.)ashow |
|---|
| 6077 | 290 126 gm |
|---|
| 6078 | 0.11117 0.(Comments:)ashow |
|---|
| 6079 | 312 162 gm |
|---|
| 6080 | -0.06814 0.(CAP returns the aligned sequences to the current editor window. The sequences are)ashow |
|---|
| 6081 | 323 162 gm |
|---|
| 6082 | 0.00427 0. 32 0.00042 0.(placed into contigs by setting the groupid. Cap does not change the order of the)awidthshow |
|---|
| 6083 | 334 162 gm |
|---|
| 6084 | -0.05079 0.(sequences, and so the results should be sorted by group and offset \(see sort under the)ashow |
|---|
| 6085 | 345 162 gm |
|---|
| 6086 | -0.02096 0.(Edit menu\).)ashow |
|---|
| 6087 | F T cp |
|---|
| 6088 | %%Page: ? 25 |
|---|
| 6089 | op |
|---|
| 6090 | 31 30 xl |
|---|
| 6091 | 1 1 pen |
|---|
| 6092 | 753 90 gm |
|---|
| 6093 | (nc 31 30 761 582 6 rc)kp |
|---|
| 6094 | 1 setTxMode |
|---|
| 6095 | 0 fs |
|---|
| 6096 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 6097 | 7 fz |
|---|
| 6098 | 2 F /|______Times-Roman fnt |
|---|
| 6099 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 6100 | 753 300 gm |
|---|
| 6101 | 12 fz |
|---|
| 6102 | 2 F /|______Times-Roman fnt |
|---|
| 6103 | (25)show |
|---|
| 6104 | 92 90 gm |
|---|
| 6105 | 10 fz |
|---|
| 6106 | 2 F /|______Times-Roman fnt |
|---|
| 6107 | -0.10661 0.(Lsadt - Least squares additive tree analysis)ashow |
|---|
| 6108 | 114 90 gm |
|---|
| 6109 | 0.18157 0. 32 0.01815 0.(Author: Geert De Soete, 'C' implementation by Mike Maciukenas University of Illinois)awidthshow |
|---|
| 6110 | 136 90 gm |
|---|
| 6111 | -0.00590 0.(Reference:LSADT, 1983 Psychometrika, 1984 Quality and Quantity)ashow |
|---|
| 6112 | 158 90 gm |
|---|
| 6113 | -0.11924 0.(Parameters:)ashow |
|---|
| 6114 | 169 162 gm |
|---|
| 6115 | -0.02085 0.(Distance correction to use in distance matrix calculations \(see count below\).)ashow |
|---|
| 6116 | 180 162 gm |
|---|
| 6117 | -0.03211 0.(What should be used for initial parameters estimates)ashow |
|---|
| 6118 | 191 162 gm |
|---|
| 6119 | -0.12921 0.(Random number seed)ashow |
|---|
| 6120 | 202 162 gm |
|---|
| 6121 | -0.05371 0.(Display method \(See TreeTool below\))ashow |
|---|
| 6122 | 224 90 gm |
|---|
| 6123 | 0.11117 0.(Comments:)ashow |
|---|
| 6124 | 235 162 gm |
|---|
| 6125 | -0.02113 0.(The program has been rewritten in 'C' and will be included with the rRNA Database)ashow |
|---|
| 6126 | 246 162 gm |
|---|
| 6127 | 0.03906 0. 32 0.00390 0.(phylogenetic package being written at the University of Illinois Department of)awidthshow |
|---|
| 6128 | 257 162 gm |
|---|
| 6129 | 0.04248 0.(Microbiology.)ashow |
|---|
| 6130 | 279 162 gm |
|---|
| 6131 | -0.01466 0.(Count is a short program to calculate a distance matrix from a sequence)ashow |
|---|
| 6132 | 290 162 gm |
|---|
| 6133 | -0.01652 0.(alignment \(see below\).)ashow |
|---|
| 6134 | 334 90 gm |
|---|
| 6135 | -0.00831 0.(Count - Distance matrix calculator)ashow |
|---|
| 6136 | 356 90 gm |
|---|
| 6137 | 0.45852 0. 32 0.04585 0.(Author: Steven Smith)awidthshow |
|---|
| 6138 | 378 90 gm |
|---|
| 6139 | -0.11924 0.(Parameters:)ashow |
|---|
| 6140 | 389 162 gm |
|---|
| 6141 | -0.07836 0.(Correction method)ashow |
|---|
| 6142 | 389 306 gm |
|---|
| 6143 | -0.01190 0.(Currently Jukes-Cantor or none)ashow |
|---|
| 6144 | 400 162 gm |
|---|
| 6145 | -0.17300 0.(Include dashed columns)ashow |
|---|
| 6146 | 411 162 gm |
|---|
| 6147 | -0.04403 0.(Match upper case to lower)ashow |
|---|
| 6148 | 444 90 gm |
|---|
| 6149 | 0.11117 0.(Comments:)ashow |
|---|
| 6150 | 455 162 gm |
|---|
| 6151 | -0.02917 0.(Passes back a distance matrix in a format readable by LSADT.)ashow |
|---|
| 6152 | 510 90 gm |
|---|
| 6153 | -0.06629 0.(Treetool - Tree drawing/manipulation)ashow |
|---|
| 6154 | 532 90 gm |
|---|
| 6155 | -0.01724 0.(Author:)ashow |
|---|
| 6156 | 532 126 gm |
|---|
| 6157 | 0.06912 0. 32 0.00691 0.(Michael Maciukenas, University of Illinois)awidthshow |
|---|
| 6158 | 554 90 gm |
|---|
| 6159 | 0.11117 0.(Comments:)ashow |
|---|
| 6160 | 565 162 gm |
|---|
| 6161 | -0.08711 0.(See included documentation for TreeTool usage.)ashow |
|---|
| 6162 | F T cp |
|---|
| 6163 | %%Page: ? 26 |
|---|
| 6164 | op |
|---|
| 6165 | 31 30 xl |
|---|
| 6166 | 1 1 pen |
|---|
| 6167 | 753 90 gm |
|---|
| 6168 | (nc 31 30 761 582 6 rc)kp |
|---|
| 6169 | 1 setTxMode |
|---|
| 6170 | 0 fs |
|---|
| 6171 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 6172 | 7 fz |
|---|
| 6173 | 2 F /|______Times-Roman fnt |
|---|
| 6174 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 6175 | 753 300 gm |
|---|
| 6176 | 12 fz |
|---|
| 6177 | 2 F /|______Times-Roman fnt |
|---|
| 6178 | (26)show |
|---|
| 6179 | 81 90 gm |
|---|
| 6180 | 10 fz |
|---|
| 6181 | 2 F /|______Times-Roman fnt |
|---|
| 6182 | -0.10578 0.(Readseq - format conversion program)ashow |
|---|
| 6183 | 103 90 gm |
|---|
| 6184 | -0.01724 0.(Author:)ashow |
|---|
| 6185 | 103 162 gm |
|---|
| 6186 | (Don Gilbert)show |
|---|
| 6187 | 125 90 gm |
|---|
| 6188 | -0.11924 0.(Parameters:)ashow |
|---|
| 6189 | 125 162 gm |
|---|
| 6190 | 0.05798 0. 32 0.00579 0.(Many, but can easily be run in interactive mdoe.)awidthshow |
|---|
| 6191 | 147 90 gm |
|---|
| 6192 | 0.11117 0.(Comments:)ashow |
|---|
| 6193 | 158 162 gm |
|---|
| 6194 | -0.02134 0.(Readseq is a very useful program for format conversion. The latest versionsupports over a)ashow |
|---|
| 6195 | 169 162 gm |
|---|
| 6196 | -0.01359 0.(dozen different file formats, as well as formating capabilities for publication. GDE makes)ashow |
|---|
| 6197 | 180 162 gm |
|---|
| 6198 | -0.02366 0.(of Readseq for importing and exporting seqeuences as well as a filtering tool to some)ashow |
|---|
| 6199 | 191 162 gm |
|---|
| 6200 | -0.02290 0.(external functions.)ashow |
|---|
| 6201 | 246 90 gm |
|---|
| 6202 | -0.10661 0.(Lsadt - Least squares additive tree analysis)ashow |
|---|
| 6203 | 268 90 gm |
|---|
| 6204 | 0.18157 0. 32 0.01815 0.(Author: Geert De Soete, 'C' implementation by Mike Maciukenas University of Illinois)awidthshow |
|---|
| 6205 | 290 90 gm |
|---|
| 6206 | -0.00590 0.(Reference:LSADT, 1983 Psychometrika, 1984 Quality and Quantity)ashow |
|---|
| 6207 | 312 90 gm |
|---|
| 6208 | -0.11924 0.(Parameters:)ashow |
|---|
| 6209 | 323 162 gm |
|---|
| 6210 | -0.02085 0.(Distance correction to use in distance matrix calculations \(see count below\).)ashow |
|---|
| 6211 | 334 162 gm |
|---|
| 6212 | -0.03211 0.(What should be used for initial parameters estimates)ashow |
|---|
| 6213 | 345 162 gm |
|---|
| 6214 | -0.12921 0.(Random number seed)ashow |
|---|
| 6215 | 356 162 gm |
|---|
| 6216 | -0.05371 0.(Display method \(See TreeTool below\))ashow |
|---|
| 6217 | 378 90 gm |
|---|
| 6218 | 0.11117 0.(Comments:)ashow |
|---|
| 6219 | 389 162 gm |
|---|
| 6220 | -0.02113 0.(The program has been rewritten in 'C' and will be included with the rRNA Database)ashow |
|---|
| 6221 | 400 162 gm |
|---|
| 6222 | 0.03906 0. 32 0.00390 0.(phylogenetic package being written at the University of Illinois Department of)awidthshow |
|---|
| 6223 | 411 162 gm |
|---|
| 6224 | 0.04248 0.(Microbiology.)ashow |
|---|
| 6225 | 433 162 gm |
|---|
| 6226 | -0.01466 0.(Count is a short program to calculate a distance matrix from a sequence)ashow |
|---|
| 6227 | 444 162 gm |
|---|
| 6228 | -0.01652 0.(alignment \(see below\).)ashow |
|---|
| 6229 | 488 90 gm |
|---|
| 6230 | -0.00831 0.(Count - Distance matrix calculator)ashow |
|---|
| 6231 | 510 90 gm |
|---|
| 6232 | 0.45852 0. 32 0.04585 0.(Author: Steven Smith)awidthshow |
|---|
| 6233 | 532 90 gm |
|---|
| 6234 | -0.11924 0.(Parameters:)ashow |
|---|
| 6235 | 543 162 gm |
|---|
| 6236 | -0.07836 0.(Correction method)ashow |
|---|
| 6237 | 543 306 gm |
|---|
| 6238 | -0.01190 0.(Currently Jukes-Cantor or none)ashow |
|---|
| 6239 | 554 162 gm |
|---|
| 6240 | -0.17300 0.(Include dashed columns)ashow |
|---|
| 6241 | 565 162 gm |
|---|
| 6242 | -0.04403 0.(Match upper case to lower)ashow |
|---|
| 6243 | 598 90 gm |
|---|
| 6244 | 0.11117 0.(Comments:)ashow |
|---|
| 6245 | 609 162 gm |
|---|
| 6246 | -0.02917 0.(Passes back a distance matrix in a format readable by LSADT.)ashow |
|---|
| 6247 | F T cp |
|---|
| 6248 | %%Page: ? 27 |
|---|
| 6249 | op |
|---|
| 6250 | 31 30 xl |
|---|
| 6251 | 1 1 pen |
|---|
| 6252 | 753 90 gm |
|---|
| 6253 | (nc 31 30 761 582 6 rc)kp |
|---|
| 6254 | 1 setTxMode |
|---|
| 6255 | 0 fs |
|---|
| 6256 | {}mark T /Times-Roman /|______Times-Roman 0 rf |
|---|
| 6257 | 7 fz |
|---|
| 6258 | 2 F /|______Times-Roman fnt |
|---|
| 6259 | 0.34057 0. 32 0.03405 0.(GDE2.0 rev1)awidthshow |
|---|
| 6260 | 753 300 gm |
|---|
| 6261 | 12 fz |
|---|
| 6262 | 2 F /|______Times-Roman fnt |
|---|
| 6263 | (27)show |
|---|
| 6264 | 92 90 gm |
|---|
| 6265 | -0.10993 0.(Copyright Notice)ashow |
|---|
| 6266 | 115 90 gm |
|---|
| 6267 | 10 fz |
|---|
| 6268 | 2 F /|______Times-Roman fnt |
|---|
| 6269 | -0.01510 0.(The Genetic Data Environment \(GDE\) software and documentation are not in the public domain. Portions)ashow |
|---|
| 6270 | 126 90 gm |
|---|
| 6271 | -0.04327 0.(of this code are owned and copyrighted by the The Board of Trustees of the University of Illinois and by)ashow |
|---|
| 6272 | 137 90 gm |
|---|
| 6273 | 0.04196 0. 32 0.00419 0.(Steven Smith. External functions used by GDE are the proporty of, their respective authors. This release of)awidthshow |
|---|
| 6274 | 148 90 gm |
|---|
| 6275 | -0.02386 0.(the GDE program and documentation may not be sold, or incorporated into a commercial product, in whole)ashow |
|---|
| 6276 | 159 90 gm |
|---|
| 6277 | 0.10650 0. 32 0.01065 0.(or in part without the expressed written consent of the University of Illinois and of its author, Steven)awidthshow |
|---|
| 6278 | 170 90 gm |
|---|
| 6279 | 0.32122 0.(Smith.)ashow |
|---|
| 6280 | 192 90 gm |
|---|
| 6281 | -0.01826 0.(All interested parties may redistribute the GDE as long as all copies are accompanied by this)ashow |
|---|
| 6282 | 203 90 gm |
|---|
| 6283 | 0.05432 0. 32 0.00543 0.(documentation, and all copyright notices remain intact. Parties interested in redistribution must do so on a)awidthshow |
|---|
| 6284 | 214 90 gm |
|---|
| 6285 | -0.03430 0.(non-profit basis, charging only for cost of media. Modifications to the GDE core editor should be forwarded)ashow |
|---|
| 6286 | 225 90 gm |
|---|
| 6287 | 0.05264 0. 32 0.00526 0.(to the author Steven Smith. External programs used by the GDE are copyright by, and are the property of)awidthshow |
|---|
| 6288 | 236 90 gm |
|---|
| 6289 | -0.03063 0.(their respective authors unless otherwise stated.)ashow |
|---|
| 6290 | 269 90 gm |
|---|
| 6291 | 0.02899 0. 32 0.00289 0.(While all attempts have been made to insure the integrity of these programs:)awidthshow |
|---|
| 6292 | 291 90 gm |
|---|
| 6293 | 12 fz |
|---|
| 6294 | 2 F /|______Times-Roman fnt |
|---|
| 6295 | -0.29307 0.(Disclaimer)ashow |
|---|
| 6296 | 314 90 gm |
|---|
| 6297 | 10 fz |
|---|
| 6298 | 2 F /|______Times-Roman fnt |
|---|
| 6299 | (THE UNIVERSITY OF ILLINOIS, HARVARD UNIVERSITY AND THE AUTHOR, STEVEN SMITH)show |
|---|
| 6300 | 325 90 gm |
|---|
| 6301 | 0.21240 0. 32 0.02124 0.(GIVE NO WARRANTIES, EXPRESSED OR IMPLIED FOR THE SOFTWARE AND)awidthshow |
|---|
| 6302 | 336 90 gm |
|---|
| 6303 | -0.03628 0.(DOCUMENTATION PROVIDED, INCLUDING, BUT NOT LIMITED TO WARRANTY OF)ashow |
|---|
| 6304 | 347 90 gm |
|---|
| 6305 | 0.20996 0. 32 0.02099 0.(MERCHANTABILITY AND WARRANTY OF FITNESS FOR A PARTICULAR PURPOSE. User)awidthshow |
|---|
| 6306 | 358 90 gm |
|---|
| 6307 | -0.06015 0.(understands the software is a research tool for which no warranties as to capabilities or accuracy are made,)ashow |
|---|
| 6308 | 369 90 gm |
|---|
| 6309 | -0.01759 0.(and user accepts the software "as is." User assumes the entire risk as to the results and performance of the)ashow |
|---|
| 6310 | 380 90 gm |
|---|
| 6311 | -0.05845 0.(software and documentation. The above parties cannot be held liable for any direct, indirect, consequential)ashow |
|---|
| 6312 | 391 90 gm |
|---|
| 6313 | -0.00201 0.(or incidental damages with respect to any claim by user or any third party on account of, or arising from the)ashow |
|---|
| 6314 | 402 90 gm |
|---|
| 6315 | -0.05157 0.(use of software and associated materials. This disclaimer covers both the GDE core editor and all external)ashow |
|---|
| 6316 | 413 90 gm |
|---|
| 6317 | -0.01464 0.(programs used by the GDE.)ashow |
|---|
| 6318 | F T cp |
|---|
| 6319 | %%Trailer |
|---|
| 6320 | cd |
|---|
| 6321 | end |
|---|
| 6322 | %%Pages: 27 0 |
|---|
| 6323 | %%EOF |
|---|
| 6324 | |
|---|
