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Last change
on this file was
2218,
checked in by westram, 20 years ago
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Property svn:eol-style set to
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.0 KB
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| 1 | item:DeSoete Tree fit |
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| 2 | itemmeta: S |
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| 3 | itemmethod: (RUN_IN_WINDOW((arb_readseq -a -f8 in1>in1.flat;\ |
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| 4 | count -t $CORR in1.flat> in1.tmp;\ |
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| 5 | lsadt<in1.tmp -seed $SEED -init $INIT -empty -99.9 > in1.out;\ |
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| 6 | $DISPLAY_FUNC));\ |
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| 7 | /bin/rm -f in1* )& |
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| 8 | itemhelp:lsadt.help |
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| 9 | |
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| 10 | in:in1 |
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| 11 | informat:genbank |
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| 12 | insave: |
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| 13 | inmask: |
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| 14 | |
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| 15 | arg:CORR |
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| 16 | arglabel:Dist. correction? |
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| 17 | argtype:choice_menu |
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| 18 | argchoice:Olsen:-c=olsen |
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| 19 | argchoice:Jukes/Cantor:-c=jukes |
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| 20 | argchoice:None:-c=none |
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| 21 | |
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| 22 | arg:INIT |
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| 23 | arglabel:Parameter estimate |
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| 24 | argtype:choice_menu |
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| 25 | argchoice:uniformly distributed random numbers:1 |
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| 26 | argchoice:error-perturbed data:2 |
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| 27 | argchoice:original distance data from input matrix:3 |
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| 28 | |
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| 29 | arg:SEED |
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| 30 | argtype:slider |
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| 31 | arglabel:Random nr. seed |
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| 32 | argmin:0 |
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| 33 | argmax:65535 |
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| 34 | argvalue:12345 |
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| 35 | |
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| 36 | arg:DISPLAY_FUNC |
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| 37 | argtype:choice_menu |
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| 38 | arglabel:View tree using |
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| 39 | argchoice:ARB ('tree_desoete'):arb_read_tree tree_desoete_$$ in1.out "PRG=DeSoete CORR=$CORR FILTER=$FILTER" |
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| 40 | argchoice:TextEdit:arb_textedit in1.out & |
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| 41 | argchoice:Treetool:treetool in1.out |
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