| 1 | # -*-Mode: Makefile;-*- (emacs! this is a makefile!) |
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| 2 | |
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| 3 | .SUFFIXES: .doc .help .html |
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| 4 | |
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| 5 | # GENHELPDEST, GENDOCDEST and HELPFILELIST are passed from 'Makefile' |
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| 6 | |
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| 7 | HELP_NAMES=$(shell cat $(HELPFILELIST)) |
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| 8 | HELP_TARGETS=$(addprefix $(GENHELPDEST)/,$(HELP_NAMES)) |
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| 9 | HELP_PLAIN=./HELP_PLAIN |
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| 10 | HELP_WRITTEN=./HELP_WRITTEN |
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| 11 | HEADER=arb_help.head |
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| 12 | |
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| 13 | all: info forcedoc $(HELP_TARGETS) |
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| 14 | |
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| 15 | info: |
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| 16 | @echo "----------------------------------------------------------------" |
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| 17 | @echo "Collecting documentation for external programs used in GDE menus" |
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| 18 | # @echo "HELP_TARGETS=$(HELP_TARGETS)" |
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| 19 | |
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| 20 | # ------------------------------------------------------------ |
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| 21 | # rules to generate helpfiles |
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| 22 | # we need rules here for each helpfile specified on an 'itemhelp' line in GDE menus. |
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| 23 | |
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| 24 | ARBHOME=.. |
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| 25 | GDE=$(ARBHOME)/GDE |
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| 26 | |
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| 27 | CLUSTALW=$(GDE)/CLUSTALW |
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| 28 | CLUSTALW_HELP=$(CLUSTALW)/clustalw_help |
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| 29 | CLUSTALW_DOC=$(CLUSTALW)/clustalw.doc |
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| 30 | |
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| 31 | $(GENHELPDEST)/clustalw.help: $(CLUSTALW_HELP) $(CLUSTALW_DOC) |
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| 32 | ./genhelptree.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $^ |
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| 33 | |
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| 34 | AXML_HELP=$(GDE)/AxML/AxML.doc |
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| 35 | FASTDNAML_DOC=$(GDE)/FASTDNAML/fastDNAml.doc |
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| 36 | |
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| 37 | $(GENHELPDEST)/dnaml.help: $(AXML_HELP) $(FASTDNAML_DOC) |
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| 38 | ./genhelptree.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $^ |
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| 39 | |
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| 40 | PROTML=$(GDE)/MOLPHY/doc |
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| 41 | PROTML_DOC_NAMES=protml protml_cli |
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| 42 | PROTML_DOCS=$(addsuffix .doc,$(addprefix $(PROTML)/,$(PROTML_DOC_NAMES))) |
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| 43 | |
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| 44 | $(GENHELPDEST)/protml.help: $(PROTML_DOCS) |
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| 45 | ./genhelptree.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $^ |
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| 46 | |
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| 47 | READSEQ=$(ARBHOME)/READSEQ |
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| 48 | READSEQ_DOC_NAMES=Readme Formats Readseq.help |
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| 49 | READSEQ_DOCS=$(addprefix $(READSEQ)/,$(READSEQ_DOC_NAMES)) |
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| 50 | |
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| 51 | $(GENHELPDEST)/readseq.help: $(READSEQ_DOCS) |
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| 52 | ./genhelptree.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $^ |
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| 53 | |
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| 54 | PHYLIP_DISTANCE_HELP_NAMES=fitch kitsch neighbor dnadist protdist |
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| 55 | PHYLIP_DISTANCE_HELPS=$(addsuffix .doc,$(addprefix $(GENDOCDEST)/,$(PHYLIP_DISTANCE_HELP_NAMES))) |
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| 56 | |
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| 57 | $(GENHELPDEST)/phylip_distance.help: $(PHYLIP_DISTANCE_HELPS) |
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| 58 | ./genhelptree.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $^ |
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| 59 | |
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| 60 | # all help files in ./HELP_PLAIN are automatically found |
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| 61 | |
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| 62 | $(GENHELPDEST)/%.help: $(HELP_PLAIN)/%.help $(HEADER) |
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| 63 | ./genhelp.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $< |
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| 64 | |
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| 65 | # all help files in ./HELP_DOC_GEN are automatically found |
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| 66 | |
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| 67 | $(GENHELPDEST)/%.help: $(GENDOCDEST)/%.doc $(HEADER) |
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| 68 | ./genhelp.sh $@ "$(subst .help,,$(notdir $@))" $(HEADER) $< |
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| 69 | |
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| 70 | # ------------------------------------------------------------ |
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| 71 | # rules to generate plain doc from provided html files |
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| 72 | |
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| 73 | HELP_TREEPUZZLE=../GDE/TREEPUZZLE/doc |
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| 74 | HELP_PHYLIP=../GDE/PHYLIP/doc |
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| 75 | HELP_PHYML=../GDE/PHYML |
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| 76 | |
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| 77 | FORCED_DOC_NAMES=proml dnapars protpars phyml |
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| 78 | LYNX_PARA=-dump -nolist -display_charset=iso-8859-1 |
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| 79 | |
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| 80 | $(GENDOCDEST)/%.doc: $(HELP_PHYLIP)/%.html Makefile.helpfiles |
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| 81 | lynx $(LYNX_PARA) $< | sed -e 's/©/(C)/' > $@ |
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| 82 | test -s $@ || (echo $@ not generated or empty && rm $@ && false) |
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| 83 | |
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| 84 | $(GENDOCDEST)/treepuzzle.doc: $(HELP_TREEPUZZLE)/manual.html Makefile.helpfiles |
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| 85 | lynx $(LYNX_PARA) $< | sed -e 's/©/(C)/' > $@ |
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| 86 | test -s $@ || (echo $@ not generated or empty && rm $@ && false) |
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| 87 | |
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| 88 | $(GENDOCDEST)/phyml.doc: $(HELP_PHYML)/usersguide_phyliplike.html Makefile.helpfiles |
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| 89 | lynx $(LYNX_PARA) $< | sed -e 's/©/(C)/' > $@ |
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| 90 | test -s $@ || (echo $@ not generated or empty && rm $@ && false) |
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| 91 | |
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| 92 | FORCED_DOCS=$(addsuffix .doc,$(addprefix $(GENDOCDEST)/,$(FORCED_DOC_NAMES))) |
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| 93 | forcedoc: $(FORCED_DOCS) |
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| 94 | |
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| 95 | # ------------------------------------------------------------ |
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| 96 | # default rule to raise error if no rule is given to generate a helpfile. |
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| 97 | # dont warn if there's a help file in HELP_WRITTEN |
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| 98 | # (files there are processed by ../HELP_SOURCE/genhelp/Makefile ) |
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| 99 | |
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| 100 | $(GENHELPDEST)/%.help: |
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| 101 | @( test -f $(HELP_WRITTEN)/$(notdir $@) ) \ |
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| 102 | || \ |
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| 103 | ( \ |
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| 104 | echo "Makefile.helpfiles:18: Error: No rule to make $(notdir $@) (to which is referred to in a GDE menu)" ; \ |
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| 105 | grep -n $(notdir $@) MENUS/*.menu ; \ |
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| 106 | false ) |
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| 107 | |
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| 108 | clean: |
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| 109 | rm -f $(GENHELPDEST)/*.help |
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| 110 | rm -f $(GENDOCDEST)/*.doc |
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