source: tags/arb_5.2/PARSIMONY/AP_buffer.hxx

#ifndef _AP_BUFFER_INC
#define _AP_BUFFER_INC

/*******************

AP_STACK        dynamischer Stack fuer void *
AP_LIST         allgemeine doppelt verketteten Liste

-- Pufferstrukturen

AP_tree_buffer  Struktur die im AP_tree gepuffert wird

-- spezielle stacks ( um casts zu vermeiden )

AP_tree_stack   Stack fuer AP_tree_buffer *
AP_main_stack   Stack fuer AP_tree *
AP_main_list    Liste fuer AP_main_buffer

********************/


struct AP_STACK_ELEM {
    struct AP_STACK_ELEM * next;
    void *                 node;
};

class AP_STACK {
    struct AP_STACK_ELEM * first;
    struct AP_STACK_ELEM * pointer;
    unsigned long          stacksize;
    unsigned long          max_stacksize;

public:
    AP_STACK();
    virtual ~AP_STACK();

    void           push(void * element);
    void          *pop();
    void           clear();
    void           get_init();
    void          *get();
    void          *get_first();
    unsigned long  size();
};

/*********************************

AP_LIST

Listenklasse

********************************/

struct AP_list_elem {
    AP_list_elem * next;
    AP_list_elem * prev;
    void *         node;
};

class AP_LIST {
    unsigned int  list_len;
    unsigned int  akt;
    AP_list_elem *first,*last,*pointer;
    AP_list_elem *element(void * elem);
public:
    AP_LIST() ;
    virtual ~AP_LIST();

    int   len();
    int   is_element(void * node );
    int   eof();
    void  insert(void * new_one);
    void  append(void * new_one);
    void  remove(void * object);
    void  push(void *elem);
    void *pop();
    void  clear();
};


/************************************

        Spezielle Puffer Strukturen
        fuer AP_NTREE

************************************/
class  AP_tree_edge;                // defined in ap_tree_nlen.hxx
struct AP_tree_buffer;

struct AP_tree_edge_data
{
    AP_FLOAT parsValue[3];          // the last three parsimony values (0=lowest 2=highest)
    int      distance;              // the distance of the last insertion
};


struct AP_tree_buffer {
    unsigned long  controll;    // used for internal buffer check
    unsigned int   count;       // counts how often the entry is buffered
    AP_STACK_MODE  mode;
    AP_sequence   *sequence;
    AP_FLOAT       mutation_rate;
    double         leftlen,rightlen;
    AP_tree       *father;
    AP_tree       *leftson;
    AP_tree       *rightson;
    GBDATA        *gb_node;

    int distance;   // distance to border (pushed with STRUCTURE!)
    // stuff from edges:

    AP_tree_edge      *edge[3];
    int                edgeIndex[3];
    AP_tree_edge_data  edgeData[3];

    void print();
};

class AP_tree_stack : public AP_STACK {
public:
    AP_tree_stack() { }
    virtual ~AP_tree_stack() {}
    void  push(struct AP_tree_buffer *value) { AP_STACK::push((void *)value); }
    AP_tree_buffer * pop() { return ( AP_tree_buffer *) AP_STACK::pop(); }
    AP_tree_buffer * get() { return ( AP_tree_buffer *) AP_STACK::get(); }
    AP_tree_buffer * get_first() { return ( AP_tree_buffer *) AP_STACK::get_first(); }
    void print();
};



class AP_main_stack : public AP_STACK {
protected:
    unsigned long last_user_buffer;
public:
    friend class AP_main;
    void push(AP_tree *value) { AP_STACK::push((void *)value); }
    AP_tree * pop() { return (AP_tree *) AP_STACK::pop(); }
    AP_tree * get() { return (AP_tree *) AP_STACK::get(); }
    AP_tree * get_first() { return (AP_tree *) AP_STACK::get_first(); }
    void print();
};


class AP_main_list : public AP_LIST {
public:
    AP_main_stack * pop() { return  (AP_main_stack *)AP_LIST::pop(); }
    void push(AP_main_stack * stack) { AP_LIST::push( (void *) stack); }
    void insert(AP_main_stack * stack) { AP_LIST::insert((void *)stack); }
    void append(AP_main_stack * stack) { AP_LIST::append((void *)stack); }
};

#endif