1 | #ifndef _AP_BUFFER_INC |
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2 | #define _AP_BUFFER_INC |
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3 | |
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4 | /******************* |
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5 | |
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6 | AP_STACK dynamischer Stack fuer void * |
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7 | AP_LIST allgemeine doppelt verketteten Liste |
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8 | |
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9 | -- Pufferstrukturen |
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10 | |
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11 | AP_tree_buffer Struktur die im AP_tree gepuffert wird |
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12 | |
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13 | -- spezielle stacks ( um casts zu vermeiden ) |
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14 | |
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15 | AP_tree_stack Stack fuer AP_tree_buffer * |
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16 | AP_main_stack Stack fuer AP_tree * |
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17 | AP_main_list Liste fuer AP_main_buffer |
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18 | |
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19 | ********************/ |
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20 | |
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21 | |
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22 | struct AP_STACK_ELEM { |
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23 | struct AP_STACK_ELEM * next; |
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24 | void * node; |
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25 | }; |
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26 | |
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27 | class AP_STACK { |
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28 | struct AP_STACK_ELEM * first; |
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29 | struct AP_STACK_ELEM * pointer; |
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30 | unsigned long stacksize; |
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31 | unsigned long max_stacksize; |
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32 | |
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33 | public: |
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34 | AP_STACK(); |
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35 | virtual ~AP_STACK(); |
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36 | |
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37 | void push(void * element); |
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38 | void *pop(); |
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39 | void clear(); |
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40 | void get_init(); |
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41 | void *get(); |
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42 | void *get_first(); |
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43 | unsigned long size(); |
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44 | }; |
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45 | |
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46 | /********************************* |
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47 | |
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48 | AP_LIST |
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49 | |
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50 | Listenklasse |
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51 | |
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52 | ********************************/ |
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53 | |
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54 | struct AP_list_elem { |
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55 | AP_list_elem * next; |
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56 | AP_list_elem * prev; |
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57 | void * node; |
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58 | }; |
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59 | |
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60 | class AP_LIST { |
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61 | unsigned int list_len; |
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62 | unsigned int akt; |
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63 | AP_list_elem *first,*last,*pointer; |
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64 | AP_list_elem *element(void * elem); |
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65 | public: |
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66 | AP_LIST() ; |
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67 | virtual ~AP_LIST(); |
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68 | |
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69 | int len(); |
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70 | int is_element(void * node ); |
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71 | int eof(); |
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72 | void insert(void * new_one); |
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73 | void append(void * new_one); |
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74 | void remove(void * object); |
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75 | void push(void *elem); |
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76 | void *pop(); |
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77 | void clear(); |
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78 | }; |
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79 | |
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80 | |
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81 | /************************************ |
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82 | |
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83 | Spezielle Puffer Strukturen |
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84 | fuer AP_NTREE |
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85 | |
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86 | ************************************/ |
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87 | class AP_tree_edge; // defined in ap_tree_nlen.hxx |
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88 | struct AP_tree_buffer; |
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89 | |
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90 | struct AP_tree_edge_data |
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91 | { |
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92 | AP_FLOAT parsValue[3]; // the last three parsimony values (0=lowest 2=highest) |
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93 | int distance; // the distance of the last insertion |
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94 | }; |
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95 | |
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96 | |
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97 | struct AP_tree_buffer { |
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98 | unsigned long controll; // used for internal buffer check |
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99 | unsigned int count; // counts how often the entry is buffered |
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100 | AP_STACK_MODE mode; |
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101 | AP_sequence *sequence; |
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102 | AP_FLOAT mutation_rate; |
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103 | double leftlen,rightlen; |
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104 | AP_tree *father; |
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105 | AP_tree *leftson; |
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106 | AP_tree *rightson; |
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107 | GBDATA *gb_node; |
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108 | |
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109 | int distance; // distance to border (pushed with STRUCTURE!) |
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110 | // stuff from edges: |
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111 | |
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112 | AP_tree_edge *edge[3]; |
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113 | int edgeIndex[3]; |
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114 | AP_tree_edge_data edgeData[3]; |
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115 | |
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116 | void print(); |
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117 | }; |
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118 | |
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119 | class AP_tree_stack : public AP_STACK { |
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120 | public: |
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121 | AP_tree_stack() { } |
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122 | virtual ~AP_tree_stack() {} |
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123 | void push(struct AP_tree_buffer *value) { AP_STACK::push((void *)value); } |
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124 | AP_tree_buffer * pop() { return ( AP_tree_buffer *) AP_STACK::pop(); } |
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125 | AP_tree_buffer * get() { return ( AP_tree_buffer *) AP_STACK::get(); } |
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126 | AP_tree_buffer * get_first() { return ( AP_tree_buffer *) AP_STACK::get_first(); } |
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127 | void print(); |
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128 | }; |
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129 | |
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130 | |
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131 | |
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132 | class AP_main_stack : public AP_STACK { |
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133 | protected: |
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134 | unsigned long last_user_buffer; |
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135 | public: |
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136 | friend class AP_main; |
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137 | void push(AP_tree *value) { AP_STACK::push((void *)value); } |
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138 | AP_tree * pop() { return (AP_tree *) AP_STACK::pop(); } |
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139 | AP_tree * get() { return (AP_tree *) AP_STACK::get(); } |
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140 | AP_tree * get_first() { return (AP_tree *) AP_STACK::get_first(); } |
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141 | void print(); |
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142 | }; |
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143 | |
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144 | |
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145 | class AP_main_list : public AP_LIST { |
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146 | public: |
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147 | AP_main_stack * pop() { return (AP_main_stack *)AP_LIST::pop(); } |
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148 | void push(AP_main_stack * stack) { AP_LIST::push( (void *) stack); } |
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149 | void insert(AP_main_stack * stack) { AP_LIST::insert((void *)stack); } |
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150 | void append(AP_main_stack * stack) { AP_LIST::append((void *)stack); } |
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151 | }; |
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152 | |
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153 | #endif |
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