source: tags/arb_5.3/ARBDB/ad_t_lpro.h

Last change on this file was 6065, checked in by westram, 15 years ago
  • moved GBT_export_tree (ARBDB) → TREE_export_tree (SL/TREE_WRITE).
  • arb_export_tree
    • added command line switches —bifurcated, —nobranchlens and —doublequotes
  • beautifyNewick.pl - formats newick tree using BioPerl?

(this are just some coproducts of my RAxML tests)

  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.5 KB
Line 
1/*
2 * Internal toolkit.
3 *
4 * This file is generated by aisc_mkpt.
5 * Any changes you make here will be overwritten later!
6 *
7 */
8
9#ifndef AD_T_LPRO_H
10#define AD_T_LPRO_H
11
12#ifndef P_
13# error P_ is not defined
14#endif
15
16/* define ARB attributes: */
17#ifndef ATTRIBUTES_H
18# include <attributes.h>
19#endif
20
21#ifdef __cplusplus
22extern "C" {
23#endif
24
25
26/* adseqcompr.c */
27char *gb_compress_seq_by_master P_((const char *master, int master_len, int master_index, GBQUARK q, const char *seq, long seq_len, long *memsize, int old_flag));
28char *gb_compress_sequence_by_master P_((GBDATA *gbd, const char *master, int master_len, int master_index, GBQUARK q, const char *seq, int seq_len, long *memsize));
29char *gb_uncompress_by_sequence P_((GBDATA *gbd, const char *ss, long size, GB_ERROR *error, long *new_size));
30
31/* adtables.c */
32GBDATA *gbt_table_link_follower P_((GBDATA *gb_main, GBDATA *gb_link, const char *link));
33
34/* adChangeKey.c */
35GB_ERROR gbt_set_type_of_changekey P_((GBDATA *gb_main, const char *field_name, GB_TYPES type, const char *change_key_path));
36
37/* adtree.c */
38GBT_TREE *gbt_read_tree_rek P_((char **data, long *startid, GBDATA **gb_tree_nodes, long structure_size, int size_of_tree, GB_ERROR *error));
39int gbt_sum_leafs P_((GBT_TREE *tree));
40GB_CSTR *gbt_fill_species_names P_((GB_CSTR *des, GBT_TREE *tree));
41
42/* adname.c */
43GB_ERROR gbt_rename_tree_rek P_((GBT_TREE *tree, int tree_index));
44
45#ifdef __cplusplus
46}
47#endif
48
49#else
50#error ad_t_lpro.h included twice
51#endif /* AD_T_LPRO_H */
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