Last change
on this file was
8203,
checked in by westram, 12 years ago
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Property svn:eol-style set to
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.5 KB
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1 | #define STD_REMOVE(in1) /bin/rm -f in1 infile intree outfile outtree treefile arb_read_tree_args |
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2 | |
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3 | #define GOTO_LOCAL_DIR mkdir -p ~/.arb_tmp/$$; cd ~/.arb_tmp/$$; STD_REMOVE(nofile) |
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4 | #define RM_LOCAL_DIR(in1) cd ~/.arb_tmp/$$ ; STD_REMOVE(in1); cd .. ; rmdir $$ |
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5 | |
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6 | #define GEN_INFILE(in1) GOTO_LOCAL_DIR ; arb_convert_aln -GenBank in1 -phylip infile |
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7 | #define RM_LOCAL_FILES(in1) RM_LOCAL_DIR(in1) |
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8 | |
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9 | #define RUN_IN_WINDOW(cmd) ${ARB_XCMD:-cmdtool} bash -x -c ''LD_LIBRARY_PATH="${ARB_LIBRARY_PATH:-/usr/arb/lib}";export LD_LIBRARY_PATH; cmd ;arb_wait'' |
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10 | |
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11 | #include <warning.genmenu> |
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12 | |
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13 | lmenu:Export |
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14 | menumeta: E |
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15 | #include <export.genmenu> |
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16 | |
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17 | lmenu:Print |
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18 | menumeta: r |
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19 | #include <pretty_print.genmenu> |
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20 | |
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21 | lmenu:Import |
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22 | menumeta:I |
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23 | #include <import.genmenu> |
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24 | |
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25 | menu:Align |
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26 | menumeta:A |
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27 | #include <align.genmenu> |
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28 | |
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29 | menu:User |
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30 | menumeta:U |
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31 | #include <start_arb.genmenu> |
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32 | |
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33 | menu:SAI |
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34 | menumeta:S |
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35 | #include <dnamlrates.genmenu> |
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36 | |
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37 | menu:Incremental phylogeny |
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38 | menumeta:c |
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39 | #include <inc_fastdnaml.genmenu> |
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40 | |
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41 | menu:Phylogeny Distance Matrix |
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42 | menumeta:D |
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43 | #include <phylip_dist_org.genmenu> |
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44 | #include <phylip_dist.genmenu> |
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45 | |
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46 | menu:Phylogeny max. parsimony |
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47 | menumeta:p |
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48 | #include <phylip_pars.genmenu> |
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49 | |
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50 | menu:Phylogeny max. Likelyhood EXP |
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51 | menumeta:X |
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52 | #include <fastdnaml.genmenu> |
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53 | |
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54 | menu:Phylogeny max. Likelyhood |
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55 | menumeta:L |
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56 | #define RAXML_DNA |
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57 | #include <raxml.genmenu> |
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58 | #undef RAXML_DNA |
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59 | #include <raxml.genmenu> |
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60 | |
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61 | #include <phylip_ml.genmenu> |
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62 | |
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63 | menu:Phylogeny (Other) |
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64 | menumeta:O |
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65 | #include <puzzle.genmenu> |
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66 | #include <desoete.genmenu> |
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67 | |
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