source: tags/arb_5.3/GDEHELP/ARB_GDEmenus.source

Last change on this file was 8203, checked in by westram, 12 years ago
  • removed molphy (protml)
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.5 KB
Line 
1#define STD_REMOVE(in1)         /bin/rm -f in1 infile intree outfile outtree treefile arb_read_tree_args
2
3#define GOTO_LOCAL_DIR          mkdir -p ~/.arb_tmp/$$; cd ~/.arb_tmp/$$; STD_REMOVE(nofile)
4#define RM_LOCAL_DIR(in1)       cd ~/.arb_tmp/$$ ; STD_REMOVE(in1); cd .. ; rmdir $$
5
6#define GEN_INFILE(in1)         GOTO_LOCAL_DIR ; arb_convert_aln -GenBank in1 -phylip infile
7#define RM_LOCAL_FILES(in1)     RM_LOCAL_DIR(in1)
8
9#define RUN_IN_WINDOW(cmd)      ${ARB_XCMD:-cmdtool} bash -x -c ''LD_LIBRARY_PATH="${ARB_LIBRARY_PATH:-/usr/arb/lib}";export LD_LIBRARY_PATH; cmd ;arb_wait''
10
11#include <warning.genmenu>
12
13lmenu:Export
14menumeta: E
15#include <export.genmenu>
16
17lmenu:Print
18menumeta: r
19#include <pretty_print.genmenu>
20
21lmenu:Import
22menumeta:I
23#include <import.genmenu>
24
25menu:Align
26menumeta:A
27#include <align.genmenu>
28
29menu:User
30menumeta:U
31#include <start_arb.genmenu>
32
33menu:SAI
34menumeta:S
35#include <dnamlrates.genmenu>
36
37menu:Incremental phylogeny
38menumeta:c
39#include <inc_fastdnaml.genmenu>
40
41menu:Phylogeny Distance Matrix
42menumeta:D
43#include <phylip_dist_org.genmenu>
44#include <phylip_dist.genmenu>
45
46menu:Phylogeny max. parsimony
47menumeta:p
48#include <phylip_pars.genmenu>
49
50menu:Phylogeny max. Likelyhood EXP
51menumeta:X
52#include <fastdnaml.genmenu>
53
54menu:Phylogeny max. Likelyhood
55menumeta:L
56#define RAXML_DNA
57#include <raxml.genmenu>
58#undef RAXML_DNA
59#include <raxml.genmenu>
60
61#include <phylip_ml.genmenu>
62
63menu:Phylogeny (Other)
64menumeta:O
65#include <puzzle.genmenu>
66#include <desoete.genmenu>
67
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