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| 1 | // ================================================================ // |
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| 2 | // // |
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| 3 | // File : GenomeImport.h // |
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| 4 | // Purpose : Genome flat file import // |
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| 5 | // // |
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| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in November 2006 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // http://www.arb-home.de/ // |
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| 9 | // // |
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| 10 | // ================================================================ // |
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| 11 | #ifndef GENOMEIMPORT_H |
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| 12 | #define GENOMEIMPORT_H |
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| 13 | |
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| 14 | #ifndef _CPP_CSTDIO |
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| 15 | #include <cstdio> |
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| 16 | #endif |
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| 17 | #ifndef ARBDB_H |
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| 18 | #include <arbdb.h> |
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| 19 | #endif |
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| 20 | |
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| 21 | class UniqueNameDetector; |
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| 22 | class AW_repeated_question; |
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| 23 | |
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| 24 | struct ImportSession : Noncopyable { // valid during complete import of multiple files |
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| 25 | GBDATA *gb_species_data; |
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| 26 | UniqueNameDetector *und_species; // extended when creating new species |
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| 27 | AW_repeated_question *ok_to_ignore_wrong_start_codon; |
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| 28 | |
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| 29 | ImportSession(GBDATA *gb_species_data_, int estimated_genomes_count); |
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| 30 | ~ImportSession(); |
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| 31 | }; |
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| 32 | |
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| 33 | |
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| 34 | GB_ERROR GI_importGenomeFile(ImportSession& session, const char *file_name, const char *ali_name); |
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| 35 | |
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| 36 | #else |
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| 37 | #error GenomeImport.h included twice |
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| 38 | #endif // GENOMEIMPORT_H |
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| 39 | |
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