|
Last change
on this file was
6096,
checked in by westram, 15 years ago
|
- Again allow display of hidden files in filter list (reverts part of [6082])
- renamed all rarely-used import filters into .importfilter
 has to click on 'Show hidden files' to show these filters or to use them in AUTODETECT
- moved a few sub-filters to nonformats
- added .fasta_contextual_data_1_03.ift (thx to Renzo, Joerg and Frank Oliver)
- added fasta_wacc import/export filters (thx to Harald)
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
2.4 KB
|
| Line | |
|---|
| 1 | AUTODETECT "!!RICH_SEQUENCE*" |
|---|
| 2 | #Global settings: |
|---|
| 3 | KEYWIDTH 14 |
|---|
| 4 | FILETAG rsf |
|---|
| 5 | |
|---|
| 6 | BEGIN " LOCUS*" |
|---|
| 7 | |
|---|
| 8 | MATCH " LOCUS *" |
|---|
| 9 | SRT "* *=*1" |
|---|
| 10 | WRITE "name" |
|---|
| 11 | |
|---|
| 12 | MATCH " ACCESSION *" |
|---|
| 13 | SRT "\"*\"=*1:No information=" |
|---|
| 14 | ACI "extract_words("0123456789",4.0)" |
|---|
| 15 | WRITE "acc" |
|---|
| 16 | |
|---|
| 17 | MATCH " SOURCE *" |
|---|
| 18 | TAG "GCG_RSF" |
|---|
| 19 | APPEND "source" |
|---|
| 20 | |
|---|
| 21 | MATCH " ORGANISM *" |
|---|
| 22 | SRT "*|*=*1" |
|---|
| 23 | WRITE "full_name" |
|---|
| 24 | |
|---|
| 25 | MATCH " ORGANISM *" |
|---|
| 26 | SRT "*|*=*2" |
|---|
| 27 | TAG "GCG_RSF" |
|---|
| 28 | WRITE "tax" |
|---|
| 29 | |
|---|
| 30 | MATCH " VERSION *" |
|---|
| 31 | SRT "*|*=*1" |
|---|
| 32 | TAG "GCG_RSF" |
|---|
| 33 | WRITE "version" |
|---|
| 34 | |
|---|
| 35 | MATCH " AUTHORS *" |
|---|
| 36 | SRT "No information*=" |
|---|
| 37 | TAG "GCG_RSF" |
|---|
| 38 | APPEND "author" |
|---|
| 39 | |
|---|
| 40 | MATCH " TITLE *" |
|---|
| 41 | SRT "No information*=" |
|---|
| 42 | TAG "GCG_RSF" |
|---|
| 43 | APPEND "title" |
|---|
| 44 | |
|---|
| 45 | MATCH " JOURNAL *" |
|---|
| 46 | SRT "No information*=" |
|---|
| 47 | TAG "GCG_RSF" |
|---|
| 48 | APPEND "journal" |
|---|
| 49 | |
|---|
| 50 | MATCH " source*strain*" |
|---|
| 51 | SRT "*/strain\=\"*\"*=*2" |
|---|
| 52 | WRITE "strain" |
|---|
| 53 | |
|---|
| 54 | MATCH " source*clone*" |
|---|
| 55 | SRT "*/clone\=\"*\"*=*2" |
|---|
| 56 | TAG "GCG_RSF" |
|---|
| 57 | WRITE "clone" |
|---|
| 58 | |
|---|
| 59 | MATCH " source*note*" |
|---|
| 60 | SRT "*/note\=\"*\"*=*2" |
|---|
| 61 | TAG "GCG_RSF" |
|---|
| 62 | WRITE "description" |
|---|
| 63 | |
|---|
| 64 | MATCH " source*specific_host*" |
|---|
| 65 | SRT */specific_host\=\"*\"*=*2" |
|---|
| 66 | TAG "GCG_RSF" |
|---|
| 67 | APPEND "host" |
|---|
| 68 | |
|---|
| 69 | MATCH " source*isolate*" |
|---|
| 70 | SRT "*/isolate\=\"*\"*=*2" |
|---|
| 71 | WRITE "strain" |
|---|
| 72 | |
|---|
| 73 | MATCH " KEYWORDS *" |
|---|
| 74 | SRT ";=" |
|---|
| 75 | TAG "GCG_RSF" |
|---|
| 76 | APPEND "keywords" |
|---|
| 77 | |
|---|
| 78 | SEQUENCEAFTER "sequence*" |
|---|
| 79 | SEQUENCESRT "*Check*..*=*3" |
|---|
| 80 | SEQUENCEACI "remove("0123456789 /")" |
|---|
| 81 | SEQUENCEEND "}" |
|---|
| 82 | CREATE_ACC_FROM_SEQUENCE |
|---|
| 83 | |
|---|
| 84 | END "}" |
|---|
| 85 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
