source: tags/arb_5.5/DIST/DI_dna_shamos.cxx

Last change on this file was 5392, checked in by westram, 16 years ago
  • changed prefix 'ph' to 'di' ('ph' is used in ../PHYLO, and many identifiers are duplicated)
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 474 bytes
Line 
1double DI_dna_shamos::make_dist(di_mldist *helical,di_mldist *nonhelical,
2                                long *helix_filter, char *seq1, char *seq2){
3    /* seq are e [0..max_dna], all seqs are already filtered
4     */
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9}
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12double DI_dna_shamos::main(GDATA *gb_main,DI_MATRIX *matrix,AP_filter *ap_filter){
13    GB_transaction transaction_scope(gb_main);
14    BI_helix *bi_helix = new BI_helix(gb_main);
15
16    long *helix = matrix->create_helix_filter(bi_helix,ap_filter);
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