| 1 | /* -------------------------------------------------------------------------------- |
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| 2 | * File : ARB.xs.default |
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| 3 | * Purpose : Skeleton and predefined functions for ARB perl interface |
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| 4 | * Copyright : Lehrstuhl fuer Mikrobiologie, TU Muenchen |
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| 5 | * -------------------------------------------------------------------------------- */ |
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| 6 | |
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| 7 | #ifdef __cplusplus |
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| 8 | extern "C" { |
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| 9 | #endif |
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| 10 | #include "EXTERN.h" |
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| 11 | #include "perl.h" |
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| 12 | #include "XSUB.h" |
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| 13 | #include "debug.h" |
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| 14 | #include "arbdb.h" |
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| 15 | #include "arbdbt.h" |
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| 16 | #include "adGene.h" |
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| 17 | #include "ARB_ext.c" |
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| 18 | #ifdef __cplusplus |
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| 19 | } |
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| 20 | #endif |
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| 21 | |
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| 22 | |
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| 23 | MODULE = ARB PACKAGE = ARB PREFIX = P2A_ |
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| 24 | |
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| 25 | PROTOTYPES: ENABLE |
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| 26 | |
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| 27 | # -------------------------------------------------------------------------------- |
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| 28 | # the following functions are hand-coded in ARB.xs.default: |
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| 29 | |
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| 30 | GBDATA * |
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| 31 | P2A_search(gbd,str,type_of_entry) |
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| 32 | GBDATA *gbd |
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| 33 | char *str |
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| 34 | char *type_of_entry |
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| 35 | |
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| 36 | CODE: |
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| 37 | if (str[0] == 0) str = 0; |
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| 38 | RETVAL = GB_search(gbd,str,GBP_gb_types(type_of_entry)); |
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| 39 | OUTPUT: |
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| 40 | RETVAL |
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| 41 | |
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| 42 | |
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| 43 | GBDATA* |
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| 44 | P2A_find(gbd,key,gbs) |
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| 45 | GBDATA *gbd |
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| 46 | char *key |
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| 47 | char *gbs |
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| 48 | |
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| 49 | CODE: |
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| 50 | RETVAL = GB_find(gbd,key,GBP_search_mode(gbs)); |
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| 51 | OUTPUT: |
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| 52 | RETVAL |
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| 53 | |
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| 54 | |
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| 55 | GBDATA * |
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| 56 | P2A_create(father,key,type) |
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| 57 | GBDATA *father |
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| 58 | char *key |
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| 59 | char *type |
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| 60 | |
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| 61 | CODE: |
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| 62 | RETVAL = GB_create(father,key,GBP_gb_types(type)); |
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| 63 | OUTPUT: |
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| 64 | RETVAL |
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| 65 | |
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| 66 | char * |
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| 67 | P2A_request_undo_type(gb_main,type) |
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| 68 | GBDATA *gb_main |
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| 69 | char *type |
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| 70 | |
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| 71 | CODE: |
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| 72 | RETVAL = (char *)GB_request_undo_type(gb_main,GBP_undo_types(type)); |
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| 73 | OUTPUT: |
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| 74 | RETVAL |
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| 75 | |
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| 76 | char * |
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| 77 | P2A_undo(gb_main,type) |
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| 78 | GBDATA *gb_main |
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| 79 | char *type |
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| 80 | |
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| 81 | CODE: |
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| 82 | RETVAL = (char *)GB_undo(gb_main,GBP_undo_types(type)); |
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| 83 | OUTPUT: |
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| 84 | RETVAL |
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| 85 | |
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| 86 | char * |
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| 87 | P2A_undo_info(gb_main,type) |
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| 88 | GBDATA *gb_main |
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| 89 | char *type |
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| 90 | |
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| 91 | CODE: |
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| 92 | if (static_pntr) free(static_pntr); |
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| 93 | static_pntr = GB_undo_info(gb_main,GBP_undo_types(type)); |
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| 94 | RETVAL = static_pntr; |
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| 95 | OUTPUT: |
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| 96 | RETVAL |
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| 97 | |
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| 98 | GBDATA * |
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| 99 | P2AT_open_table_field(gb_table,key,type) |
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| 100 | GBDATA *gb_table |
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| 101 | char *key |
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| 102 | char *type |
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| 103 | |
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| 104 | CODE: |
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| 105 | RETVAL = GBT_open_table_field(gb_table,key,GBP_gb_types(type)); |
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| 106 | OUTPUT: |
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| 107 | RETVAL |
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| 108 | |
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| 109 | |
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| 110 | char |
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| 111 | P2AT_complementNucleotide(c,T_or_U) |
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| 112 | char c |
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| 113 | char T_or_U |
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| 114 | |
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| 115 | CODE: |
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| 116 | RETVAL = GBT_complementNucleotide(c,T_or_U); |
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| 117 | OUTPUT: |
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| 118 | RETVAL |
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| 119 | |
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| 120 | long |
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| 121 | P2AT_read_int(gb_container,fieldpath) |
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| 122 | GBDATA *gb_container |
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| 123 | char *fieldpath |
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| 124 | CODE: |
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| 125 | { |
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| 126 | long *lp = GBT_read_int(gb_container,fieldpath); |
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| 127 | RETVAL = lp ? *lp : 0; |
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| 128 | } |
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| 129 | OUTPUT: |
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| 130 | RETVAL |
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| 131 | |
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| 132 | double |
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| 133 | P2AT_read_float(gb_container,fieldpath) |
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| 134 | GBDATA *gb_container |
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| 135 | char *fieldpath |
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| 136 | CODE: |
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| 137 | { |
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| 138 | double *dp = GBT_read_float(gb_container,fieldpath); |
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| 139 | RETVAL = dp ? *dp : 0; |
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| 140 | } |
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| 141 | OUTPUT: |
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| 142 | RETVAL |
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| 143 | |
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| 144 | # -------------------------------------------------------------------------------- |
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| 145 | # functions below are auto-generated by ../TOOLS/arb_proto_2_xsub.cxx |
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| 146 | # using prototypes from the following files: |
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| 147 | # |
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| 148 | # ../ARBDB/ad_prot.h |
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| 149 | # ../ARBDB/ad_t_prot.h |
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| 150 | # ../ARBDB/adGene.h |
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| 151 | # -------------------------------------------------------------------------------- |
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| 152 | |
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