1 | #include "RNA3D_GlobalHeader.hxx" |
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2 | #include "RNA3D_Global.hxx" |
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3 | #include "RNA3D_Main.hxx" |
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4 | #include "RNA3D_Interface.hxx" |
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5 | |
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6 | #include <aw_root.hxx> |
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7 | #include <aw_window.hxx> |
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8 | #include <arbdb.h> |
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9 | |
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10 | |
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11 | using namespace std; |
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12 | |
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13 | static void CreateRNA3DAwars(AW_root *root){ |
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14 | // Display Base Section |
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15 | root->awar_int(AWAR_3D_DISPLAY_BASES, 0, AW_ROOT_DEFAULT); |
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16 | root->awar_float(AWAR_3D_DISPLAY_SIZE, 10, AW_ROOT_DEFAULT); |
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17 | root->awar_int(AWAR_3D_BASES_MODE, 0, AW_ROOT_DEFAULT); |
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18 | root->awar_int(AWAR_3D_BASES_HELIX, 1, AW_ROOT_DEFAULT); |
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19 | root->awar_int(AWAR_3D_BASES_UNPAIRED_HELIX, 1, AW_ROOT_DEFAULT); |
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20 | root->awar_int(AWAR_3D_BASES_NON_HELIX, 1, AW_ROOT_DEFAULT); |
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21 | root->awar_int(AWAR_3D_SHAPES_HELIX, 1, AW_ROOT_DEFAULT); |
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22 | root->awar_int(AWAR_3D_SHAPES_UNPAIRED_HELIX, 3, AW_ROOT_DEFAULT); |
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23 | root->awar_int(AWAR_3D_SHAPES_NON_HELIX, 1, AW_ROOT_DEFAULT); |
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24 | |
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25 | //Display Helix Section |
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26 | root->awar_int(AWAR_3D_DISPLAY_HELIX, 0, AW_ROOT_DEFAULT); |
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27 | root->awar_int(AWAR_3D_HELIX_BACKBONE, 0, AW_ROOT_DEFAULT); |
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28 | root->awar_int(AWAR_3D_HELIX_MIDPOINT, 0, AW_ROOT_DEFAULT); |
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29 | root->awar_int(AWAR_3D_HELIX_FROM, 1, AW_ROOT_DEFAULT); |
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30 | root->awar_int(AWAR_3D_HELIX_TO, 50, AW_ROOT_DEFAULT); |
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31 | root->awar_int(AWAR_3D_HELIX_NUMBER, 0, AW_ROOT_DEFAULT); |
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32 | root->awar_float(AWAR_3D_HELIX_SIZE, 0.5, AW_ROOT_DEFAULT); |
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33 | root->awar_int(AWAR_3D_DISPLAY_TERTIARY_INTRACTIONS, 0, AW_ROOT_DEFAULT); |
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34 | |
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35 | // Genral Molecule Display Section |
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36 | root->awar_int(AWAR_3D_MOL_BACKBONE, 1, AW_ROOT_DEFAULT); |
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37 | root->awar_int(AWAR_3D_MOL_COLORIZE, 0, AW_ROOT_DEFAULT); |
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38 | root->awar_int(AWAR_3D_MAP_SPECIES, 0, AW_ROOT_DEFAULT); |
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39 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_BASE, 1, AW_ROOT_DEFAULT); |
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40 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_POS, 0, AW_ROOT_DEFAULT); |
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41 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_DELETIONS, 1, AW_ROOT_DEFAULT); |
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42 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_MISSING, 1, AW_ROOT_DEFAULT); |
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43 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_INSERTIONS, 1, AW_ROOT_DEFAULT); |
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44 | root->awar_int(AWAR_3D_MAP_SPECIES_DISP_INSERTIONS_INFO, 0, AW_ROOT_DEFAULT); |
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45 | root->awar_int(AWAR_3D_CURSOR_POSITION, 0, AW_ROOT_DEFAULT); |
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46 | root->awar_float(AWAR_3D_MOL_SIZE, 0.5, AW_ROOT_DEFAULT); |
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47 | root->awar_int(AWAR_3D_MOL_DISP_POS, 0, AW_ROOT_DEFAULT); |
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48 | root->awar_int(AWAR_3D_MOL_ROTATE, 0, AW_ROOT_DEFAULT); |
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49 | root->awar_int(AWAR_3D_MOL_POS_INTERVAL, 25, AW_ROOT_DEFAULT); |
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50 | root->awar_string(AWAR_3D_SELECTED_SPECIES, "", AW_ROOT_DEFAULT); |
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51 | |
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52 | //Display SAI Section |
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53 | root->awar_int(AWAR_3D_MAP_SAI, 0, AW_ROOT_DEFAULT); |
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54 | root->awar_int(AWAR_3D_MAP_ENABLE, 0, AW_ROOT_DEFAULT); |
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55 | root->awar_int(AWAR_3D_MAP_SEARCH_STRINGS, 0, AW_ROOT_DEFAULT); |
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56 | |
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57 | root->awar_int(AWAR_3D_DISPLAY_MASK, 0, AW_ROOT_DEFAULT); |
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58 | root->awar_int(AWAR_3D_23S_RRNA_MOL, 3, AW_ROOT_DEFAULT); |
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59 | } |
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60 | |
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61 | void RNA3D_StartApplication(AW_root *awr){ |
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62 | |
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63 | CreateRNA3DAwars(awr); |
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64 | |
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65 | // Creating and Initialising Motif/OpenGL window and |
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66 | // rendering the structure |
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67 | { |
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68 | static AW_window *aw_3D = 0; |
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69 | |
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70 | if (!aw_3D) { // do not open window twice |
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71 | aw_3D = CreateRNA3DMainWindow(awr); |
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72 | if (!aw_3D) { |
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73 | GB_ERROR err = GB_get_error(); |
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74 | aw_message(GBS_global_string("Couldn't start Ribosomal RNA 3D Structure Tool.\nReason: %s", err)); |
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75 | return ; |
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76 | } |
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77 | } |
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78 | aw_3D->show(); |
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79 | } |
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80 | |
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81 | } |
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