| 1 | #ifndef arbdb_h_included |
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| 2 | #define arbdb_h_included |
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| 3 | |
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| 4 | #ifndef NDEBUG |
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| 5 | # define gb_assert(bed) do { if (!(bed)) *(int *)0=0; } while (0) |
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| 6 | # ifndef DEBUG |
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| 7 | # error DEBUG is NOT defined - but it has to! |
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| 8 | # endif |
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| 9 | #else |
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| 10 | # ifdef DEBUG |
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| 11 | # error DEBUG is defined - but it should not! |
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| 12 | # endif |
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| 13 | # define gb_assert(bed) |
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| 14 | #endif /* NDEBUG */ |
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| 15 | |
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| 16 | typedef const char *GB_CSTR; /* local memory mgrment */ |
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| 17 | typedef const char *GB_ERROR; /* memory management is controlled by the ARBDB lib */ |
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| 18 | typedef char *GB_CPNTR; /* points into a piece of mem */ |
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| 19 | |
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| 20 | #define GB_PATH_MAX 1024 |
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| 21 | #define GBS_GLOBAL_STRING_SIZE 64000 |
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| 22 | |
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| 23 | |
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| 24 | #ifndef GB_INCLUDED |
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| 25 | #define GB_INCLUDED |
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| 26 | |
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| 27 | #define GB_CORE *(long *)0 =0 |
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| 28 | #define GB_KEY_LEN_MAX 64 |
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| 29 | #define GB_KEY_LEN_MIN 2 |
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| 30 | |
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| 31 | /* ---------------------------------------- need some stuff if adlocal.h is not included */ |
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| 32 | |
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| 33 | #ifndef GBL_INCLUDED |
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| 34 | typedef enum gb_call_back_type { |
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| 35 | GB_CB_DELETE = 1, |
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| 36 | GB_CB_CHANGED = 2, |
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| 37 | GB_CB_SON_CREATED = 4, |
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| 38 | GB_CB_ALL = 7 |
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| 39 | } GB_CB_TYPE; |
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| 40 | |
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| 41 | typedef struct gb_data_base_type GBDATA; |
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| 42 | typedef void (*GB_CB)(GBDATA *,int *clientdata, GB_CB_TYPE gbtype); |
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| 43 | /*#define GB_CB void (*)(GBDATA *,int *clientdata, GB_CB_TYPE gbtype)*/ |
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| 44 | |
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| 45 | #endif /*GBL_INCLUDED*/ |
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| 46 | |
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| 47 | |
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| 48 | #define GBUSE(a) a=a |
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| 49 | |
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| 50 | typedef char *MALLOC_T; |
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| 51 | |
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| 52 | typedef unsigned long GB_ULONG; |
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| 53 | |
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| 54 | /* 4 Bytes */ |
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| 55 | typedef unsigned int GB_UINT4; |
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| 56 | typedef const unsigned int GB_CUINT4; |
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| 57 | typedef const float GB_CFLOAT; |
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| 58 | |
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| 59 | /* ---------------------------------------- if adlocal.h not included */ |
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| 60 | |
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| 61 | #ifndef GBL_INCLUDED |
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| 62 | |
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| 63 | #if defined(DEBUG) |
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| 64 | #define MEMORY_TEST 1 |
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| 65 | #else |
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| 66 | #define MEMORY_TEST 0 |
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| 67 | #endif |
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| 68 | |
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| 69 | |
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| 70 | #if (MEMORY_TEST==1) |
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| 71 | |
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| 72 | typedef char *GB_REL_STRING; |
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| 73 | typedef struct gb_data_base_type *GB_REL_GBDATA; |
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| 74 | typedef struct gb_data_base_type2 *GB_REL_CONTAINER; |
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| 75 | |
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| 76 | #else |
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| 77 | |
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| 78 | typedef long GB_REL_STRING; /* relative adress */ |
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| 79 | typedef long GB_REL_GBDATA; /* relative adress */ |
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| 80 | typedef long GB_REL_CONTAINER; /* relative adress */ |
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| 81 | |
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| 82 | #endif /*MEMORY_TEST==1*/ |
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| 83 | |
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| 84 | typedef void GB_MAIN_TYPE; |
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| 85 | typedef struct gbs_hash_struct GB_HASH; |
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| 86 | |
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| 87 | struct gb_flag_types { /* public flags */ |
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| 88 | unsigned int type:4; |
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| 89 | unsigned int security_delete:3; |
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| 90 | unsigned int security_write:3; |
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| 91 | unsigned int security_read:3; |
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| 92 | unsigned int compressed_data: 1; |
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| 93 | unsigned int unused: 1; /* last bit saved */ |
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| 94 | unsigned int user_flags:8; |
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| 95 | unsigned int temporary:1; /* ==1 -> dont save entry */ |
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| 96 | unsigned int saved_flags:8; |
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| 97 | }; |
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| 98 | |
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| 99 | struct gb_flag_types2 { /* private flags */ |
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| 100 | unsigned int intern0: 16; |
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| 101 | unsigned int intern1: 16; |
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| 102 | }; |
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| 103 | |
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| 104 | |
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| 105 | |
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| 106 | /********************* public ******************/ |
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| 107 | |
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| 108 | |
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| 109 | typedef int GBQUARK; |
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| 110 | |
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| 111 | /*********** Undo ***********/ |
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| 112 | typedef enum { |
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| 113 | GB_UNDO_NONE, /* no undo */ |
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| 114 | GB_UNDO_KILL, /* no undo and delete all old undos */ |
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| 115 | GB_UNDO_UNDO, /* normal undo -> deleted all redoes */ |
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| 116 | GB_UNDO_REDO, /* moves to UNDO_REDO */ |
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| 117 | GB_UNDO_UNDO_REDO /* internal makes undo redoable */ |
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| 118 | } GB_UNDO_TYPE; |
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| 119 | |
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| 120 | |
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| 121 | struct gb_transaction_save; |
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| 122 | |
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| 123 | #endif /*GBL_INCLUDED*/ |
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| 124 | |
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| 125 | enum {GB_FALSE = 0 , GB_TRUE = 1 }; |
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| 126 | |
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| 127 | typedef char GB_BOOL; |
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| 128 | typedef int GB_COMPRESSION_MASK; |
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| 129 | |
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| 130 | typedef enum gb_key_types { |
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| 131 | GB_NONE = 0, |
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| 132 | GB_BIT = 1, |
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| 133 | GB_BYTE = 2, |
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| 134 | GB_INT = 3, |
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| 135 | GB_FLOAT = 4, |
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| 136 | GB_BITS = 6, |
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| 137 | GB_BYTES = 8, |
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| 138 | GB_INTS = 9, |
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| 139 | GB_FLOATS = 10, |
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| 140 | GB_LINK = 11, |
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| 141 | GB_STRING = 12, |
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| 142 | GB_STRING_SHRT = 13, |
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| 143 | GB_DB = 15, |
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| 144 | GB_TYPE_MAX = 16 |
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| 145 | } GB_TYPES; |
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| 146 | |
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| 147 | enum gb_search_enum { |
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| 148 | GB_FIND = 0, |
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| 149 | GB_CREATE_CONTAINER = GB_DB /* create other types: use GB_TYPES */ |
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| 150 | }; |
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| 151 | |
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| 152 | #define GB_TYPE_2_CHAR "-bcif-B-CIFlSS-%" |
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| 153 | |
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| 154 | enum gb_search_types { |
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| 155 | this_level = 1, |
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| 156 | down_level = 2, |
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| 157 | down_2_level = 4, |
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| 158 | search_next = 8 /* search after item : this_level,down_level*/ |
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| 159 | }; |
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| 160 | /********************* public end ******************/ |
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| 161 | |
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| 162 | /********************* client/server ******************/ |
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| 163 | struct gbcmc_comm { |
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| 164 | int socket; |
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| 165 | char *unix_name; |
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| 166 | char *error; |
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| 167 | }; |
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| 168 | |
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| 169 | |
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| 170 | /********************* database ******************/ |
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| 171 | #define SIZOFINTERN 10 |
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| 172 | |
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| 173 | struct gb_extern_data { |
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| 174 | |
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| 175 | GB_REL_STRING rel_data; /* Typ: (char *) */ |
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| 176 | long memsize; |
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| 177 | long size; |
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| 178 | }; |
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| 179 | |
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| 180 | struct GB_INTern_strings { |
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| 181 | char data[SIZOFINTERN]; |
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| 182 | unsigned char memsize; |
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| 183 | unsigned char size; |
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| 184 | }; |
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| 185 | |
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| 186 | struct GB_INTern { |
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| 187 | char data[SIZOFINTERN]; |
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| 188 | }; |
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| 189 | |
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| 190 | union gb_data_base_type_union { |
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| 191 | long i; |
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| 192 | struct GB_INTern_strings istr; |
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| 193 | struct GB_INTern in; |
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| 194 | struct gb_extern_data ex; |
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| 195 | }; |
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| 196 | |
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| 197 | struct gb_callback; |
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| 198 | struct gb_db_extended { |
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| 199 | long creation_date; |
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| 200 | long update_date; |
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| 201 | struct gb_callback *callback; |
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| 202 | struct gb_transaction_save *old; |
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| 203 | }; |
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| 204 | |
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| 205 | struct gb_data_base_type { |
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| 206 | long server_id; |
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| 207 | GB_REL_CONTAINER rel_father; /* Typ: (struct gb_data_base_type2 *) */ |
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| 208 | struct gb_db_extended *ext; |
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| 209 | long index; |
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| 210 | struct gb_flag_types flags; |
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| 211 | struct gb_flag_types2 flags2; |
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| 212 | union gb_data_base_type_union info; |
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| 213 | int cache_index; /* should be a member of gb_db_extended */ |
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| 214 | }; |
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| 215 | |
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| 216 | /*********** Alignment ***********/ |
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| 217 | |
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| 218 | typedef enum |
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| 219 | { |
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| 220 | GB_AT_UNKNOWN, |
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| 221 | GB_AT_RNA, /* Nucleotide sequence (U) */ |
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| 222 | GB_AT_DNA, /* Nucleotide sequence (T) */ |
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| 223 | GB_AT_AMI, /* AminoAcid */ |
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| 224 | GB_AT_PRO /* Protein */ |
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| 225 | |
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| 226 | } GB_alignment_type; |
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| 227 | |
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| 228 | /*********** Sort ***********/ |
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| 229 | |
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| 230 | |
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| 231 | #ifdef __cplusplus |
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| 232 | extern "C" { |
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| 233 | #endif |
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| 234 | |
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| 235 | typedef long (*GB_MERGE_SORT)(void *, void *, char *cd); |
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| 236 | /*#define GB_MERGE_SORT long (*)(void *, void *, char *cd )*/ |
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| 237 | |
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| 238 | #ifdef __cplusplus |
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| 239 | } |
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| 240 | #endif |
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| 241 | |
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| 242 | extern long GB_NOVICE; |
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| 243 | |
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| 244 | /*********** Commands ***********/ |
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| 245 | #define GBL_MAX_ARGUMENTS 50 |
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| 246 | |
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| 247 | /* |
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| 248 | #define GBL_COMMAND GB_ERROR (*)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, \ |
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| 249 | int argcparam,GBL *argvparam, \ |
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| 250 | int *argcout, GBL **argvout) |
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| 251 | |
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| 252 | #define GBL_COMMAND_DECL(x) GB_ERROR (*x)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, \ |
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| 253 | int argcparam,GBL *argvparam, \ |
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| 254 | int *argcout, GBL **argvout) |
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| 255 | */ |
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| 256 | |
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| 257 | typedef struct gbl_struct { |
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| 258 | char *str; |
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| 259 | } GBL; |
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| 260 | |
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| 261 | #ifdef __cplusplus |
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| 262 | extern "C" { |
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| 263 | #endif |
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| 264 | |
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| 265 | typedef GB_ERROR (*GBL_COMMAND)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, |
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| 266 | int argcparam,GBL *argvparam, |
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| 267 | int *argcout, GBL **argvout); |
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| 268 | |
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| 269 | #ifdef __cplusplus |
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| 270 | } |
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| 271 | #endif |
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| 272 | |
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| 273 | struct GBL_command_table { |
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| 274 | const char *command_identifier; |
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| 275 | GBL_COMMAND function; |
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| 276 | }; |
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| 277 | |
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| 278 | typedef struct GBDATA_SET_STRUCT { |
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| 279 | long nitems; |
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| 280 | long malloced_items; |
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| 281 | GBDATA **items; |
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| 282 | } GBDATA_SET; |
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| 283 | |
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| 284 | #ifdef __cplusplus |
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| 285 | extern "C" { |
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| 286 | #endif |
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| 287 | |
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| 288 | typedef GBDATA* (*GB_Link_Follower)(GBDATA *GB_root,GBDATA *GB_elem,const char *link); |
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| 289 | typedef long (*gbs_hash_sort_func_type)(const char *key0,long val0,const char *key1,long val1); |
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| 290 | typedef long (*gb_compare_two_items_type)(void *p0,void *p1,char *cd); |
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| 291 | typedef long (*gb_hash_loop_type)(const char *key, long val); |
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| 292 | typedef long (*gb_hash_loop_type2)(const char *key, long val, void *parameter); |
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| 293 | typedef void (*gb_warning_func_type)(const char *msg); |
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| 294 | typedef int (*gb_status_func_type)(double val); |
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| 295 | typedef int (*gb_status_func2_type)(const char *val); |
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| 296 | typedef void (*gb_error_handler_type)(const char *msg); |
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| 297 | |
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| 298 | #ifdef __cplusplus |
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| 299 | } |
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| 300 | #endif |
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| 301 | |
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| 302 | #if defined(__GNUG__) || defined(__cplusplus) |
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| 303 | extern "C" { |
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| 304 | #endif |
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| 305 | |
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| 306 | # define P_(s) s |
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| 307 | |
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| 308 | #include <stdio.h> |
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| 309 | #include <ad_prot.h> |
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| 310 | #ifdef GBL_INCLUDED |
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| 311 | #include <ad_lpro.h> |
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| 312 | #endif /*GBL_INCLUDED*/ |
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| 313 | |
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| 314 | #undef P_ |
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| 315 | |
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| 316 | #if defined(__GNUG__) || defined(__cplusplus) |
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| 317 | } |
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| 318 | #endif |
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| 319 | |
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| 320 | #endif /*GB_INCLUDED*/ |
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| 321 | |
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| 322 | #define GB_INLINE |
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| 323 | |
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| 324 | #ifdef __cplusplus |
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| 325 | |
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| 326 | struct gb_data_base_type2; |
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| 327 | class GB_transaction { |
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| 328 | GBDATA *gbd; |
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| 329 | public: |
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| 330 | GB_transaction(GBDATA *gb_main); |
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| 331 | ~GB_transaction(); |
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| 332 | }; |
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| 333 | |
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| 334 | int GB_info(struct gb_data_base_type2 *gbd); |
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| 335 | |
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| 336 | # ifndef NO_INLINE |
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| 337 | # undef GB_INLINE |
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| 338 | # define GB_INLINE inline |
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| 339 | # endif /*NO_INLINE*/ |
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| 340 | #endif /*__cplusplus*/ |
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| 341 | |
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| 342 | #endif /*arbdb_h_included*/ |
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