1 | #ifndef arbdb_h_included |
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2 | #define arbdb_h_included |
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3 | |
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4 | #ifndef NDEBUG |
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5 | # define gb_assert(bed) do { if (!(bed)) *(int *)0=0; } while (0) |
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6 | # ifndef DEBUG |
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7 | # error DEBUG is NOT defined - but it has to! |
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8 | # endif |
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9 | #else |
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10 | # ifdef DEBUG |
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11 | # error DEBUG is defined - but it should not! |
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12 | # endif |
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13 | # define gb_assert(bed) |
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14 | #endif /* NDEBUG */ |
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15 | |
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16 | typedef const char *GB_CSTR; /* local memory mgrment */ |
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17 | typedef const char *GB_ERROR; /* memory management is controlled by the ARBDB lib */ |
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18 | typedef char *GB_CPNTR; /* points into a piece of mem */ |
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19 | |
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20 | #define GB_PATH_MAX 1024 |
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21 | #define GBS_GLOBAL_STRING_SIZE 64000 |
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22 | |
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23 | |
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24 | #ifndef GB_INCLUDED |
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25 | #define GB_INCLUDED |
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26 | |
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27 | #define GB_CORE *(long *)0 =0 |
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28 | #define GB_KEY_LEN_MAX 64 |
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29 | #define GB_KEY_LEN_MIN 2 |
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30 | |
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31 | /* ---------------------------------------- need some stuff if adlocal.h is not included */ |
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32 | |
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33 | #ifndef GBL_INCLUDED |
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34 | typedef enum gb_call_back_type { |
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35 | GB_CB_DELETE = 1, |
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36 | GB_CB_CHANGED = 2, |
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37 | GB_CB_SON_CREATED = 4, |
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38 | GB_CB_ALL = 7 |
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39 | } GB_CB_TYPE; |
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40 | |
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41 | typedef struct gb_data_base_type GBDATA; |
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42 | typedef void (*GB_CB)(GBDATA *,int *clientdata, GB_CB_TYPE gbtype); |
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43 | /*#define GB_CB void (*)(GBDATA *,int *clientdata, GB_CB_TYPE gbtype)*/ |
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44 | |
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45 | #endif /*GBL_INCLUDED*/ |
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46 | |
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47 | |
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48 | #define GBUSE(a) a=a |
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49 | |
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50 | typedef char *MALLOC_T; |
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51 | |
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52 | typedef unsigned long GB_ULONG; |
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53 | |
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54 | /* 4 Bytes */ |
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55 | typedef unsigned int GB_UINT4; |
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56 | typedef const unsigned int GB_CUINT4; |
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57 | typedef const float GB_CFLOAT; |
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58 | |
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59 | /* ---------------------------------------- if adlocal.h not included */ |
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60 | |
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61 | #ifndef GBL_INCLUDED |
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62 | |
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63 | #if defined(DEBUG) |
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64 | #define MEMORY_TEST 1 |
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65 | #else |
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66 | #define MEMORY_TEST 0 |
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67 | #endif |
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68 | |
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69 | |
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70 | #if (MEMORY_TEST==1) |
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71 | |
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72 | typedef char *GB_REL_STRING; |
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73 | typedef struct gb_data_base_type *GB_REL_GBDATA; |
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74 | typedef struct gb_data_base_type2 *GB_REL_CONTAINER; |
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75 | |
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76 | #else |
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77 | |
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78 | typedef long GB_REL_STRING; /* relative adress */ |
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79 | typedef long GB_REL_GBDATA; /* relative adress */ |
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80 | typedef long GB_REL_CONTAINER; /* relative adress */ |
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81 | |
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82 | #endif /*MEMORY_TEST==1*/ |
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83 | |
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84 | typedef void GB_MAIN_TYPE; |
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85 | typedef struct gbs_hash_struct GB_HASH; |
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86 | |
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87 | struct gb_flag_types { /* public flags */ |
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88 | unsigned int type:4; |
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89 | unsigned int security_delete:3; |
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90 | unsigned int security_write:3; |
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91 | unsigned int security_read:3; |
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92 | unsigned int compressed_data: 1; |
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93 | unsigned int unused: 1; /* last bit saved */ |
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94 | unsigned int user_flags:8; |
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95 | unsigned int temporary:1; /* ==1 -> dont save entry */ |
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96 | unsigned int saved_flags:8; |
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97 | }; |
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98 | |
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99 | struct gb_flag_types2 { /* private flags */ |
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100 | unsigned int intern0: 16; |
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101 | unsigned int intern1: 16; |
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102 | }; |
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103 | |
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104 | |
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105 | |
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106 | /********************* public ******************/ |
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107 | |
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108 | |
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109 | typedef int GBQUARK; |
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110 | |
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111 | /*********** Undo ***********/ |
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112 | typedef enum { |
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113 | GB_UNDO_NONE, /* no undo */ |
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114 | GB_UNDO_KILL, /* no undo and delete all old undos */ |
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115 | GB_UNDO_UNDO, /* normal undo -> deleted all redoes */ |
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116 | GB_UNDO_REDO, /* moves to UNDO_REDO */ |
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117 | GB_UNDO_UNDO_REDO /* internal makes undo redoable */ |
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118 | } GB_UNDO_TYPE; |
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119 | |
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120 | |
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121 | struct gb_transaction_save; |
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122 | |
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123 | #endif /*GBL_INCLUDED*/ |
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124 | |
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125 | enum {GB_FALSE = 0 , GB_TRUE = 1 }; |
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126 | |
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127 | typedef char GB_BOOL; |
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128 | typedef int GB_COMPRESSION_MASK; |
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129 | |
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130 | typedef enum gb_key_types { |
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131 | GB_NONE = 0, |
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132 | GB_BIT = 1, |
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133 | GB_BYTE = 2, |
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134 | GB_INT = 3, |
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135 | GB_FLOAT = 4, |
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136 | GB_BITS = 6, |
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137 | GB_BYTES = 8, |
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138 | GB_INTS = 9, |
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139 | GB_FLOATS = 10, |
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140 | GB_LINK = 11, |
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141 | GB_STRING = 12, |
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142 | GB_STRING_SHRT = 13, |
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143 | GB_DB = 15, |
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144 | GB_TYPE_MAX = 16 |
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145 | } GB_TYPES; |
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146 | |
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147 | enum gb_search_enum { |
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148 | GB_FIND = 0, |
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149 | GB_CREATE_CONTAINER = GB_DB /* create other types: use GB_TYPES */ |
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150 | }; |
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151 | |
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152 | #define GB_TYPE_2_CHAR "-bcif-B-CIFlSS-%" |
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153 | |
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154 | enum gb_search_types { |
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155 | this_level = 1, |
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156 | down_level = 2, |
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157 | down_2_level = 4, |
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158 | search_next = 8 /* search after item : this_level,down_level*/ |
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159 | }; |
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160 | /********************* public end ******************/ |
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161 | |
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162 | /********************* client/server ******************/ |
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163 | struct gbcmc_comm { |
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164 | int socket; |
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165 | char *unix_name; |
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166 | char *error; |
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167 | }; |
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168 | |
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169 | |
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170 | /********************* database ******************/ |
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171 | #define SIZOFINTERN 10 |
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172 | |
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173 | struct gb_extern_data { |
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174 | |
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175 | GB_REL_STRING rel_data; /* Typ: (char *) */ |
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176 | long memsize; |
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177 | long size; |
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178 | }; |
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179 | |
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180 | struct GB_INTern_strings { |
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181 | char data[SIZOFINTERN]; |
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182 | unsigned char memsize; |
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183 | unsigned char size; |
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184 | }; |
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185 | |
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186 | struct GB_INTern { |
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187 | char data[SIZOFINTERN]; |
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188 | }; |
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189 | |
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190 | union gb_data_base_type_union { |
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191 | long i; |
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192 | struct GB_INTern_strings istr; |
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193 | struct GB_INTern in; |
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194 | struct gb_extern_data ex; |
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195 | }; |
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196 | |
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197 | struct gb_callback; |
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198 | struct gb_db_extended { |
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199 | long creation_date; |
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200 | long update_date; |
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201 | struct gb_callback *callback; |
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202 | struct gb_transaction_save *old; |
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203 | }; |
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204 | |
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205 | struct gb_data_base_type { |
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206 | long server_id; |
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207 | GB_REL_CONTAINER rel_father; /* Typ: (struct gb_data_base_type2 *) */ |
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208 | struct gb_db_extended *ext; |
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209 | long index; |
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210 | struct gb_flag_types flags; |
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211 | struct gb_flag_types2 flags2; |
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212 | union gb_data_base_type_union info; |
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213 | int cache_index; /* should be a member of gb_db_extended */ |
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214 | }; |
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215 | |
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216 | /*********** Alignment ***********/ |
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217 | |
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218 | typedef enum |
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219 | { |
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220 | GB_AT_UNKNOWN, |
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221 | GB_AT_RNA, /* Nucleotide sequence (U) */ |
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222 | GB_AT_DNA, /* Nucleotide sequence (T) */ |
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223 | GB_AT_AMI, /* AminoAcid */ |
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224 | GB_AT_PRO /* Protein */ |
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225 | |
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226 | } GB_alignment_type; |
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227 | |
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228 | /*********** Sort ***********/ |
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229 | |
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230 | |
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231 | #ifdef __cplusplus |
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232 | extern "C" { |
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233 | #endif |
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234 | |
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235 | typedef long (*GB_MERGE_SORT)(void *, void *, char *cd); |
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236 | /*#define GB_MERGE_SORT long (*)(void *, void *, char *cd )*/ |
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237 | |
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238 | #ifdef __cplusplus |
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239 | } |
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240 | #endif |
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241 | |
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242 | extern long GB_NOVICE; |
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243 | |
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244 | /*********** Commands ***********/ |
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245 | #define GBL_MAX_ARGUMENTS 50 |
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246 | |
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247 | /* |
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248 | #define GBL_COMMAND GB_ERROR (*)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, \ |
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249 | int argcparam,GBL *argvparam, \ |
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250 | int *argcout, GBL **argvout) |
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251 | |
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252 | #define GBL_COMMAND_DECL(x) GB_ERROR (*x)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, \ |
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253 | int argcparam,GBL *argvparam, \ |
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254 | int *argcout, GBL **argvout) |
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255 | */ |
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256 | |
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257 | typedef struct gbl_struct { |
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258 | char *str; |
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259 | } GBL; |
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260 | |
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261 | #ifdef __cplusplus |
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262 | extern "C" { |
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263 | #endif |
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264 | |
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265 | typedef GB_ERROR (*GBL_COMMAND)(GBDATA *gb_ref, char *com, int argcinput, GBL *argvinput, |
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266 | int argcparam,GBL *argvparam, |
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267 | int *argcout, GBL **argvout); |
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268 | |
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269 | #ifdef __cplusplus |
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270 | } |
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271 | #endif |
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272 | |
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273 | struct GBL_command_table { |
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274 | const char *command_identifier; |
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275 | GBL_COMMAND function; |
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276 | }; |
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277 | |
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278 | typedef struct GBDATA_SET_STRUCT { |
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279 | long nitems; |
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280 | long malloced_items; |
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281 | GBDATA **items; |
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282 | } GBDATA_SET; |
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283 | |
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284 | #ifdef __cplusplus |
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285 | extern "C" { |
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286 | #endif |
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287 | |
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288 | typedef GBDATA* (*GB_Link_Follower)(GBDATA *GB_root,GBDATA *GB_elem,const char *link); |
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289 | typedef long (*gbs_hash_sort_func_type)(const char *key0,long val0,const char *key1,long val1); |
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290 | typedef long (*gb_compare_two_items_type)(void *p0,void *p1,char *cd); |
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291 | typedef long (*gb_hash_loop_type)(const char *key, long val); |
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292 | typedef long (*gb_hash_loop_type2)(const char *key, long val, void *parameter); |
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293 | typedef void (*gb_warning_func_type)(const char *msg); |
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294 | typedef int (*gb_status_func_type)(double val); |
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295 | typedef int (*gb_status_func2_type)(const char *val); |
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296 | typedef void (*gb_error_handler_type)(const char *msg); |
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297 | |
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298 | #ifdef __cplusplus |
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299 | } |
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300 | #endif |
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301 | |
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302 | #if defined(__GNUG__) || defined(__cplusplus) |
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303 | extern "C" { |
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304 | #endif |
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305 | |
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306 | # define P_(s) s |
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307 | |
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308 | #include <stdio.h> |
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309 | #include <ad_prot.h> |
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310 | #ifdef GBL_INCLUDED |
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311 | #include <ad_lpro.h> |
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312 | #endif /*GBL_INCLUDED*/ |
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313 | |
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314 | #undef P_ |
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315 | |
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316 | #if defined(__GNUG__) || defined(__cplusplus) |
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317 | } |
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318 | #endif |
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319 | |
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320 | #endif /*GB_INCLUDED*/ |
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321 | |
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322 | #define GB_INLINE |
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323 | |
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324 | #ifdef __cplusplus |
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325 | |
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326 | struct gb_data_base_type2; |
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327 | class GB_transaction { |
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328 | GBDATA *gbd; |
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329 | public: |
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330 | GB_transaction(GBDATA *gb_main); |
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331 | ~GB_transaction(); |
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332 | }; |
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333 | |
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334 | int GB_info(struct gb_data_base_type2 *gbd); |
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335 | |
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336 | # ifndef NO_INLINE |
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337 | # undef GB_INLINE |
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338 | # define GB_INLINE inline |
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339 | # endif /*NO_INLINE*/ |
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340 | #endif /*__cplusplus*/ |
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341 | |
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342 | #endif /*arbdb_h_included*/ |
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