| 1 | #ifndef arbdbt_h_included |
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| 2 | #define arbdbt_h_included |
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| 3 | |
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| 4 | #define GBT_SPECIES_INDEX_SIZE 10000 |
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| 5 | #define GBT_SAI_INDEX_SIZE 1000 |
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| 6 | |
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| 7 | typedef float GBT_LEN; |
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| 8 | |
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| 9 | #define GBT_TREE_ELEMENTS(type) \ |
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| 10 | GB_BOOL is_leaf; \ |
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| 11 | GB_BOOL tree_is_one_piece_of_memory; \ |
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| 12 | type *father,*leftson,*rightson; \ |
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| 13 | GBT_LEN leftlen,rightlen; \ |
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| 14 | GBDATA *gb_node; \ |
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| 15 | char *name; \ |
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| 16 | char *remark_branch |
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| 17 | |
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| 18 | #define CLEAR_GBT_TREE_ELEMENTS(tree_obj_ptr) \ |
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| 19 | (tree_obj_ptr)->is_leaf = GB_FALSE; \ |
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| 20 | (tree_obj_ptr)->tree_is_one_piece_of_memory = GB_FALSE; \ |
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| 21 | (tree_obj_ptr)->father = 0; \ |
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| 22 | (tree_obj_ptr)->leftson = 0; \ |
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| 23 | (tree_obj_ptr)->rightson = 0; \ |
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| 24 | (tree_obj_ptr)->leftlen = 0; \ |
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| 25 | (tree_obj_ptr)->rightlen = 0; \ |
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| 26 | (tree_obj_ptr)->gb_node = 0; \ |
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| 27 | (tree_obj_ptr)->name = 0; \ |
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| 28 | (tree_obj_ptr)->remark_branch = 0 |
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| 29 | |
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| 30 | #define AWAR_SPECIES_DATA "species_data" |
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| 31 | #define AWAR_SPECIES "species" |
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| 32 | |
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| 33 | #define AWAR_SAI_DATA "extended_data" |
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| 34 | #define AWAR_SAI "extended" |
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| 35 | |
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| 36 | #define AWAR_CONFIG_DATA "configuration_data" |
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| 37 | #define AWAR_CONFIG "configuration" |
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| 38 | |
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| 39 | #define AWAR_TREE_DATA "tree_data" |
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| 40 | |
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| 41 | #ifdef FAKE_VIRTUAL_TABLE_POINTER |
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| 42 | typedef FAKE_VIRTUAL_TABLE_POINTER virtualTable; |
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| 43 | #endif |
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| 44 | |
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| 45 | typedef struct gbt_tree_struct { |
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| 46 | #ifdef FAKE_VIRTUAL_TABLE_POINTER |
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| 47 | virtualTable *dummy_virtual; /* simulate pointer to virtual-table used in AP_tree */ |
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| 48 | #endif |
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| 49 | GBT_TREE_ELEMENTS(struct gbt_tree_struct); |
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| 50 | } GBT_TREE; |
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| 51 | |
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| 52 | typedef struct gb_seq_compr_tree { |
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| 53 | #ifdef FAKE_VIRTUAL_TABLE_POINTER |
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| 54 | virtualTable *dummy_virtual; /* simulate pointer to virtual-table used in AP_tree */ |
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| 55 | #endif |
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| 56 | GBT_TREE_ELEMENTS(struct gb_seq_compr_tree); |
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| 57 | int index; /* either master/sequence index */ |
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| 58 | } GB_CTREE; /* @@@ OLI */ |
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| 59 | |
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| 60 | #define GBT_TREE_AWAR_SRT " =:\n=:*=tree_*1:tree_tree_*=tree_*1" |
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| 61 | #define GBT_ALI_AWAR_SRT " =:\n=:*=ali_*1:ali_ali_*=ali_*1" |
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| 62 | |
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| 63 | #define P_(s) s |
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| 64 | |
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| 65 | #if defined(__GNUG__) || defined(__cplusplus) |
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| 66 | extern "C" { |
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| 67 | # include <ad_t_prot.h> |
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| 68 | # ifdef GBL_INCLUDED |
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| 69 | # include <ad_t_lpro.h> |
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| 70 | # endif |
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| 71 | } |
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| 72 | #else |
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| 73 | # include <ad_t_prot.h> |
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| 74 | # ifdef GBL_INCLUDED |
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| 75 | # include <ad_t_lpro.h> |
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| 76 | # endif /* GBL_INCLUDED */ |
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| 77 | #endif /* defined(__GNUG__) || defined(__cplusplus) */ |
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| 78 | |
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| 79 | #undef P_ |
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| 80 | #endif /*arbdbt_h_included*/ |
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