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Last change
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2,
checked in by oldcode, 24 years ago
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Initial revision
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Author Date Id Revision
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File size:
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| 1 | /* |
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| 2 | * totalml.h Adachi, J. 1994.12.30 |
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| 3 | * Copyright (C) 1994 J. Adachi & M. Hasegawa. All rights reserved. |
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| 4 | */ |
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| 5 | |
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| 6 | #include "molphy.h" |
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| 7 | #include "matrixut.h" |
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| 8 | |
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| 9 | #define NUMBOOTS 10000 /* number of bootstrap resamplings */ |
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| 10 | |
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| 11 | #define LLSFILEEXT ".lls" |
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| 12 | |
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| 13 | #define MAXCOLUMN 80 |
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| 14 | #define BUFLINE 512 |
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| 15 | #define SWITCHES "bCHhivwZz" |
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| 16 | #define VERSION "1.1" |
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| 17 | #define DATE "Dec 30 1994" |
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| 18 | |
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| 19 | #ifdef MAIN_MODULE |
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| 20 | #define EXTERN |
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| 21 | #else |
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| 22 | #define EXTERN extern |
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| 23 | #endif |
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| 24 | |
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| 25 | EXTERN FILE *llsfp; |
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| 26 | EXTERN time_t Ct0; |
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| 27 | |
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| 28 | EXTERN boolean Boots_optn; /* b option no Bootstrap probability */ |
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| 29 | EXTERN boolean Ctacit_optn; /* C option taCiturnity */ |
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| 30 | EXTERN boolean Info_optn; /* i option */ |
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| 31 | EXTERN boolean Verbs_optn; /* v option Verbose to stderr */ |
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| 32 | EXTERN boolean Write_optn; /* w option output sequence infomation */ |
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| 33 | EXTERN boolean Debug; /* Z option */ |
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| 34 | EXTERN boolean Debug_optn; /* z option */ |
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| 35 | |
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| 36 | EXTERN char *Prog_name; |
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| 37 | EXTERN char *Comment; |
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| 38 | EXTERN char *Llsfile; |
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| 39 | EXTERN int Numtree; |
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| 40 | EXTERN int Numseqs; |
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| 41 | EXTERN int Allsite; |
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| 42 | |
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| 43 | EXTERN ivector Numsite; |
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| 44 | |
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| 45 | EXTERN dcube Lnlklsite; |
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| 46 | EXTERN dmatrix Alnlklsite; |
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