| 1 | #include <stdio.h> |
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| 2 | #include <stdlib.h> |
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| 3 | #include <string.h> |
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| 4 | #include <arbdb.h> |
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| 5 | #include <arbdbt.h> |
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| 6 | |
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| 7 | #include <aw_root.hxx> |
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| 8 | #include <aw_device.hxx> |
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| 9 | #include <aw_window.hxx> |
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| 10 | #include <aw_preset.hxx> |
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| 11 | #include <aw_awars.hxx> |
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| 12 | #include <awt.hxx> |
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| 13 | #include <awtc_rename.hxx> |
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| 14 | |
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| 15 | #include "merge.hxx" |
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| 16 | #include "mg_merge.hxx" |
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| 17 | |
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| 18 | GBDATA *gb_merge = NULL; |
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| 19 | GBDATA *gb_dest = NULL; |
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| 20 | |
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| 21 | void MG_exit(AW_window *aww) { |
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| 22 | if(gb_main) { |
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| 23 | aww->hide(); |
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| 24 | }else{ |
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| 25 | exit (0); |
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| 26 | } |
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| 27 | } |
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| 28 | |
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| 29 | int mg_save_enabled = 1; |
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| 30 | |
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| 31 | void |
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| 32 | MG_save_merge_cb(AW_window *aww) |
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| 33 | { |
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| 34 | char *name = aww->get_root()->awar(AWAR_MERGE_DB"/file_name")->read_string(); |
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| 35 | GB_begin_transaction(gb_merge); |
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| 36 | GBT_check_data(gb_merge,0); |
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| 37 | GB_commit_transaction(gb_merge); |
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| 38 | GB_ERROR error = GB_save(gb_merge, name, "b"); |
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| 39 | if (error) aw_message(error); |
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| 40 | else aww->get_root()->awar(AWAR_MERGE_DB"/directory")->touch(); |
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| 41 | delete name; |
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| 42 | } |
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| 43 | |
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| 44 | AW_window *MG_save_source_cb(AW_root *aw_root, char *base_name) |
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| 45 | { |
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| 46 | static AW_window_simple *aws = 0; |
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| 47 | if (aws) return (AW_window *)aws; |
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| 48 | |
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| 49 | aws = new AW_window_simple; |
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| 50 | aws->init( aw_root, "MERGE_SAVE_DB_I", "SAVE ARB DB I", 10, 10 ); |
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| 51 | aws->load_xfig("sel_box.fig"); |
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| 52 | |
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| 53 | aws->at("close");aws->callback((AW_CB0)AW_POPDOWN); |
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| 54 | aws->create_button("CLOSE","CLOSE","C"); |
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| 55 | |
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| 56 | aws->at("save");aws->callback(MG_save_merge_cb); |
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| 57 | aws->create_button("SAVE","SAVE","S"); |
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| 58 | |
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| 59 | aws->callback( (AW_CB0)AW_POPDOWN); |
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| 60 | aws->at("cancel"); |
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| 61 | aws->create_button("CLOSE","CANCEL","C"); |
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| 62 | |
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| 63 | awt_create_selection_box((AW_window *)aws,base_name); |
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| 64 | |
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| 65 | return (AW_window *)aws; |
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| 66 | } |
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| 67 | |
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| 68 | void |
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| 69 | MG_save_cb(AW_window *aww) |
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| 70 | { |
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| 71 | char *name = aww->get_root()->awar(AWAR_MAIN_DB"/file_name")->read_string(); |
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| 72 | char *type = aww->get_root()->awar(AWAR_MAIN_DB"/type")->read_string(); |
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| 73 | aw_openstatus("Saving database"); |
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| 74 | GB_begin_transaction(gb_dest); |
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| 75 | GBT_check_data(gb_dest,0); |
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| 76 | GB_commit_transaction(gb_dest); |
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| 77 | GB_ERROR error = GB_save(gb_dest, name, type); |
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| 78 | aw_closestatus(); |
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| 79 | if (error) aw_message(error); |
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| 80 | else aww->get_root()->awar(AWAR_MAIN_DB"/directory")->touch(); |
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| 81 | delete name; |
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| 82 | delete type; |
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| 83 | } |
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| 84 | |
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| 85 | AW_window *MG_save_result_cb(AW_root *aw_root, char *base_name) |
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| 86 | { |
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| 87 | static AW_window_simple *aws = 0; |
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| 88 | if (aws) return (AW_window *)aws; |
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| 89 | aw_root->awar_string( AWAR_DB_COMMENT, "<no description>", gb_dest); |
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| 90 | |
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| 91 | aws = new AW_window_simple; |
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| 92 | aws->init( aw_root, "MERGE_SAVE_WHOLE_DB", "SAVE WHOLE DATABASE", 10, 10 ); |
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| 93 | aws->load_xfig("sel_box.fig"); |
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| 94 | |
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| 95 | aws->at("close");aws->callback((AW_CB0)AW_POPDOWN); |
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| 96 | aws->create_button("CLOSE","CLOSE","C"); |
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| 97 | |
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| 98 | awt_create_selection_box((AW_window *)aws,base_name); |
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| 99 | |
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| 100 | aws->at("user"); |
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| 101 | aws->label("Type"); |
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| 102 | aws->create_option_menu(AWAR_MAIN_DB"/type"); |
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| 103 | aws->insert_option("Binary","B","b"); |
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| 104 | aws->insert_option("Bin (with FastLoad File)","f","bm"); |
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| 105 | aws->update_option_menu(); |
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| 106 | |
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| 107 | aws->at("user2"); |
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| 108 | aws->create_button(0,"Database Description"); |
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| 109 | |
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| 110 | |
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| 111 | |
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| 112 | aws->callback( (AW_CB0)AW_POPDOWN); |
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| 113 | aws->at("cancel4"); |
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| 114 | aws->create_button("CLOSE","CANCEL","C"); |
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| 115 | |
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| 116 | aws->callback( (AW_CB0)AW_POPDOWN); |
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| 117 | aws->at("cancel4"); |
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| 118 | aws->create_button("CLOSE", "CANCEL","C"); |
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| 119 | |
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| 120 | aws->at("save4");aws->callback(MG_save_cb); |
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| 121 | aws->create_button("SAVE","SAVE","S"); |
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| 122 | |
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| 123 | |
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| 124 | aws->at("user3"); |
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| 125 | aws->create_text_field(AWAR_DB_COMMENT); |
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| 126 | |
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| 127 | return (AW_window *)aws; |
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| 128 | } |
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| 129 | |
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| 130 | void |
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| 131 | MG_save_quick_cb(AW_window *aww) |
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| 132 | { |
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| 133 | char *name = aww->get_root()->awar(AWAR_MAIN_DB"/file_name")->read_string(); |
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| 134 | aw_openstatus("Saving database"); |
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| 135 | GB_begin_transaction(gb_dest); |
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| 136 | GBT_check_data(gb_dest,0); |
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| 137 | GB_commit_transaction(gb_dest); |
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| 138 | GB_ERROR error = GB_save_quick_as(gb_dest, name); |
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| 139 | aw_closestatus(); |
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| 140 | if (error) aw_message(error); |
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| 141 | else aww->get_root()->awar(AWAR_MAIN_DB"/directory")->touch(); |
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| 142 | delete name; |
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| 143 | } |
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| 144 | |
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| 145 | AW_window *MG_save_quick_result_cb(AW_root *aw_root, char *base_name) |
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| 146 | { |
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| 147 | static AW_window_simple *aws = 0; |
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| 148 | if (aws) return (AW_window *)aws; |
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| 149 | |
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| 150 | aws = new AW_window_simple; |
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| 151 | aws->init( aw_root, "SAVE_CHANGES_OF_DB_II_AS", "SAVE CHANGES TO DB2 AS", 10, 10 ); |
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| 152 | aws->load_xfig("sel_box.fig"); |
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| 153 | |
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| 154 | aws->at("close");aws->callback((AW_CB0)AW_POPDOWN); |
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| 155 | aws->create_button("CLOSE","CLOSE","C"); |
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| 156 | |
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| 157 | aws->at("save");aws->callback(MG_save_quick_cb); |
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| 158 | aws->create_button("SAVE","SAVE","S"); |
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| 159 | |
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| 160 | awt_create_selection_box((AW_window *)aws,base_name); |
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| 161 | |
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| 162 | return (AW_window *)aws; |
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| 163 | } |
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| 164 | |
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| 165 | // uses gb_dest and gb_merge |
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| 166 | void MG_start_cb2(AW_window *aww,AW_root *aw_root, int save_enabled) |
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| 167 | { |
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| 168 | mg_save_enabled = save_enabled; |
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| 169 | GB_transaction dummy2(gb_merge); |
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| 170 | // if (GB_read_clients(gb_merge) >= 0) { |
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| 171 | // awt_selection_list_rescan(gb_merge,AWT_NDS_FILTER); |
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| 172 | // } |
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| 173 | |
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| 174 | GB_transaction dummy(gb_dest); |
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| 175 | GBT_mark_all(gb_dest,0); |
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| 176 | // if (GB_read_clients(gb_merge) >= 0) { |
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| 177 | // awt_selection_list_rescan(gb_dest,AWT_NDS_FILTER); |
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| 178 | // } |
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| 179 | |
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| 180 | GB_change_my_security(gb_dest,6,"passwd"); |
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| 181 | GB_change_my_security(gb_merge,6,"passwd"); |
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| 182 | if (aww) aww->hide(); |
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| 183 | |
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| 184 | AW_window_simple_menu *awm = new AW_window_simple_menu(); |
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| 185 | awm->init(aw_root,"ARB_MERGE", "ARB_MERGE", 0,0,400,100); |
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| 186 | awm->load_xfig("merge/main.fig"); |
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| 187 | |
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| 188 | awm->create_menu( 0, "File", "F", "merge_file.hlp", AWM_ALL ); |
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| 189 | if (mg_save_enabled && GB_read_clients(gb_merge)>=0) { |
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| 190 | awm->insert_menu_topic("save_DB1","Save Data Base I ...", "S","save_as.hlp",AWM_ALL, AW_POPUP, (AW_CL)MG_save_source_cb,(AW_CL)AWAR_MERGE_DB ); |
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| 191 | } |
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| 192 | awm->insert_menu_topic("quit","Quit", "Q","quit.hlp", AWM_ALL, (AW_CB)MG_exit, 0, 0 ); |
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| 193 | |
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| 194 | awm->button_length(30); |
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| 195 | |
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| 196 | if (GB_read_clients(gb_merge)>=0){ // There is no reason to rename an newly created database |
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| 197 | awm->at("alignment"); |
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| 198 | awm->callback((AW_CB1)AW_POPUP,(AW_CL)MG_merge_alignment_cb); |
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| 199 | awm->help_text("mg_alignment.hlp"); |
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| 200 | awm->create_button("CHECK_ALIGNMENTS", "Check Alignments ..."); |
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| 201 | |
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| 202 | awm->at("names"); |
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| 203 | awm->callback((AW_CB1)AW_POPUP,(AW_CL)MG_merge_names_cb); |
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| 204 | awm->help_text("mg_names.hlp"); |
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| 205 | awm->create_button("CHECK_NAMES", "Check Names ..."); |
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| 206 | } |
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| 207 | |
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| 208 | |
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| 209 | |
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| 210 | awm->at("species"); |
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| 211 | awm->callback((AW_CB1)AW_POPUP,(AW_CL)MG_merge_species_cb); |
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| 212 | awm->help_text("mg_species.hlp"); |
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| 213 | awm->create_button("TRANSFER_SPECIES", "Transfer Species ... "); |
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| 214 | |
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| 215 | awm->at("extendeds"); |
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| 216 | awm->callback((AW_CB1)AW_POPUP,(AW_CL)MG_merge_extendeds_cb); |
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| 217 | awm->help_text("mg_extendeds.hlp"); |
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| 218 | awm->create_button("TRANSFER_SAIS", "Transfer SAIs ..."); |
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| 219 | |
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| 220 | awm->at("trees"); |
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| 221 | awm->callback((AW_CB1)AW_POPUP,(AW_CL)MG_merge_trees_cb); |
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| 222 | awm->help_text("mg_trees.hlp"); |
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| 223 | awm->create_button("TRANSFER_TREES", "Transfer Trees ..."); |
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| 224 | |
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| 225 | if (save_enabled && GB_read_clients(gb_dest)>=0){ // No need to save when importing data |
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| 226 | awm->at("save"); |
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| 227 | awm->callback(AW_POPUP,(AW_CL)MG_save_result_cb,(AW_CL)AWAR_MAIN_DB); |
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| 228 | awm->create_button("SAVE_WHOLE_DB2", "Save Whole DB II ..."); |
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| 229 | |
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| 230 | awm->at("save_quick"); |
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| 231 | awm->highlight(); |
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| 232 | awm->callback(AW_POPUP,(AW_CL)MG_save_quick_result_cb,(AW_CL)AWAR_MAIN_DB); |
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| 233 | awm->create_button("SAVE_CHANGES_OF_DB2", "Save Changes of DB II as ..."); |
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| 234 | } |
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| 235 | |
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| 236 | awm->button_length(15); |
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| 237 | |
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| 238 | awm->at("db1"); |
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| 239 | awm->create_button(0,AWAR_MERGE_DB"/file_name"); |
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| 240 | |
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| 241 | awm->at("db2"); |
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| 242 | awm->create_button(0,AWAR_MAIN_DB"/file_name"); |
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| 243 | |
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| 244 | awm->button_length(0); |
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| 245 | awm->shadow_width(1); |
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| 246 | awm->at("icon"); |
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| 247 | awm->callback(AW_POPUP_HELP, (AW_CL)"mg_main.hlp"); |
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| 248 | awm->create_button("HELP_MERGE", "#merge/icon.bitmap"); |
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| 249 | |
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| 250 | awm->show(); |
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| 251 | } |
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| 252 | |
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| 253 | void MG_start_cb(AW_window *aww) |
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| 254 | { |
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| 255 | AW_root *awr = aww->get_root(); |
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| 256 | |
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| 257 | char *merge = awr->awar(AWAR_MERGE_DB"/file_name")->read_string(); |
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| 258 | if (!strlen(merge) || (strcmp(merge,":") && GB_size_of_file(merge)<=0)) { |
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| 259 | aw_message("Cannot find database I file"); |
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| 260 | delete merge; |
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| 261 | return; |
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| 262 | } |
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| 263 | |
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| 264 | char *main = awr->awar(AWAR_MAIN_DB"/file_name")->read_string(); |
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| 265 | if (!strlen(main) || (strcmp(merge,":") && GB_size_of_file(main)<=0 )) { |
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| 266 | aw_message("Cannot find main file -> creating empty database"); |
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| 267 | } |
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| 268 | aw_openstatus("Loading databases"); |
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| 269 | |
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| 270 | aw_status("DATABASE I"); |
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| 271 | gb_merge = GBT_open(merge,"rw","$(ARBHOME)/lib/pts/*"); |
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| 272 | if (!gb_merge) { |
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| 273 | aw_message(GB_get_error()); |
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| 274 | delete merge; |
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| 275 | delete main; |
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| 276 | aw_closestatus(); |
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| 277 | return; |
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| 278 | } |
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| 279 | |
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| 280 | aw_status("DATABASE II"); |
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| 281 | gb_dest = GBT_open(main,"rwc","$(ARBHOME)/lib/pts/*"); |
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| 282 | aw_closestatus(); |
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| 283 | delete main; |
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| 284 | delete merge; |
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| 285 | |
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| 286 | if (!gb_dest) { |
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| 287 | aw_message(GB_get_error()); |
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| 288 | return; |
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| 289 | } |
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| 290 | MG_start_cb2(aww,aww->get_root()); |
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| 291 | } |
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| 292 | |
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| 293 | |
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| 294 | AW_window *create_merge_init_window(AW_root *awr) |
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| 295 | { |
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| 296 | AW_window_simple *aws = new AW_window_simple; |
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| 297 | aws->init( awr, "MERGE_SELECT_DATABASES", "MERGE SELECT TWO DATABASES", 100, 100 ); |
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| 298 | aws->load_xfig("merge/startup.fig"); |
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| 299 | |
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| 300 | aws->button_length( 10 ); |
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| 301 | aws->label_length( 10 ); |
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| 302 | |
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| 303 | aws->callback( (AW_CB0)exit); |
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| 304 | aws->at("close"); |
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| 305 | aws->create_button("QUIT","QUIT","A"); |
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| 306 | |
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| 307 | aws->callback(AW_POPUP_HELP,(AW_CL)"arb_merge.hlp"); |
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| 308 | aws->at("help"); |
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| 309 | aws->create_button("HELP","HELP","H"); |
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| 310 | |
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| 311 | awt_create_selection_box(aws,AWAR_MERGE_DB,""); |
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| 312 | aws->at("type"); |
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| 313 | aws->create_option_menu(AWAR_MERGE_DB"/filter"); |
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| 314 | aws->insert_option("ARB","A","arb"); |
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| 315 | aws->insert_default_option("OTHER","O",""); |
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| 316 | aws->update_option_menu(); |
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| 317 | |
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| 318 | awt_create_selection_box(aws,AWAR_MAIN_DB,"m"); |
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| 319 | aws->at("mtype"); |
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| 320 | aws->create_option_menu(AWAR_MAIN_DB"/filter"); |
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| 321 | aws->insert_option("ARB","A","arb"); |
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| 322 | aws->insert_default_option("OTHER","O",""); |
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| 323 | aws->update_option_menu(); |
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| 324 | |
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| 325 | aws->callback(MG_start_cb); |
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| 326 | aws->at("go"); |
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| 327 | aws->highlight(); |
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| 328 | aws->create_button("GO","GO","G"); |
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| 329 | |
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| 330 | aws->button_length(0); |
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| 331 | aws->shadow_width(1); |
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| 332 | aws->at("icon"); |
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| 333 | aws->callback(AW_POPUP_HELP,(AW_CL)"arb_merge.hlp"); |
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| 334 | aws->create_button("HELP_MERGE", "#merge/icon.bitmap"); |
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| 335 | |
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| 336 | return (AW_window *)aws; |
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| 337 | } |
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| 338 | |
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| 339 | void MG_create_all_awars(AW_root *awr, AW_default aw_def,const char *fname_one, const char *fname_two) |
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| 340 | { |
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| 341 | awr->awar_string( AWAR_MAIN_DB"/filter", "arb",aw_def); |
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| 342 | awr->awar_string( AWAR_MAIN_DB"/directory", "",aw_def); |
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| 343 | awr->awar_string( AWAR_MAIN_DB"/file_name", fname_two,aw_def); |
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| 344 | awr->awar_string( AWAR_MAIN_DB"/type", "b",aw_def); |
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| 345 | awr->awar_string( AWAR_MERGE_DB"/filter", "arb",aw_def); |
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| 346 | awr->awar_string( AWAR_MERGE_DB"/directory", "",aw_def); |
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| 347 | awr->awar_string( AWAR_MERGE_DB"/file_name", fname_one,aw_def); |
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| 348 | |
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| 349 | MG_create_trees_awar(awr,aw_def); |
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| 350 | MG_create_extendeds_var(awr,aw_def); |
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| 351 | MG_create_alignment_vars(awr,aw_def); |
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| 352 | MG_create_species_var(awr,aw_def); |
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| 353 | create_rename_variables(awr,aw_def); |
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| 354 | } |
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| 355 | |
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| 356 | AW_window * |
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| 357 | create_MG_main_window(AW_root *aw_root) |
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| 358 | { |
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| 359 | MG_create_all_awars(aw_root,AW_ROOT_DEFAULT); |
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| 360 | AW_window *aww=create_merge_init_window(aw_root); |
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| 361 | aww->show(); |
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| 362 | return aww; |
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| 363 | } |
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| 364 | |
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| 365 | |
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