| 1 | C |
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| 2 | C Indices to IO arrays with flags, logical units and file names |
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| 3 | C |
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| 4 | INTEGER ndx_ingbk, ndx_inkey, ndx_intbl |
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| 5 | INTEGER ndx_dbbin, ndx_dbgbk, ndx_dbkey, ndx_dbtbl |
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| 6 | INTEGER ndx_bpmat |
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| 7 | INTEGER ndx_outgbk, ndx_outkey, ndx_outsab, ndx_outtbl, |
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| 8 | - ndx_outhum, ndx_outrul, ndx_outsrv |
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| 9 | INTEGER ndx_log, ndx_err |
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| 10 | |
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| 11 | COMMON / NDX / ndx_ingbk, ndx_inkey, ndx_intbl, |
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| 12 | - ndx_dbbin, ndx_dbgbk, ndx_dbkey, ndx_dbtbl, |
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| 13 | - ndx_bpmat, |
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| 14 | - ndx_outgbk, ndx_outkey, ndx_outsab, ndx_outtbl, |
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| 15 | - ndx_outhum, ndx_outrul, ndx_outsrv, |
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| 16 | - ndx_log, ndx_err |
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| 17 | C |
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| 18 | C Arrays that store flags, logical units and file names, |
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| 19 | C |
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| 20 | LOGICAL IO_flags (ndx_max) |
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| 21 | COMMON / IO_FLAGS / IO_flags |
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| 22 | |
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| 23 | INTEGER IO_luns (ndx_max) |
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| 24 | COMMON / IO_LUNS / IO_luns |
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| 25 | |
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| 26 | CHARACTER*80 IO_fnms (ndx_max) |
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| 27 | COMMON / IO_FNMS / IO_fnms |
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| 28 | C |
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| 29 | C Options |
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| 30 | C |
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| 31 | INTEGER cl_templates |
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| 32 | REAL cl_completepct |
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| 33 | INTEGER cl_listwid |
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| 34 | INTEGER cl_olilen |
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| 35 | |
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| 36 | LOGICAL cl_completeflag, cl_tplflag, cl_outbinflag, |
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| 37 | - cl_dbgapsflag, cl_t2uflag, cl_u2tflag, |
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| 38 | - cl_upcaseflag, cl_locaseflag, cl_debugflag, |
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| 39 | - cl_htmlflag |
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| 40 | C |
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| 41 | C Common block for command line options, |
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| 42 | C |
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| 43 | COMMON / IO_OPTS / |
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| 44 | - cl_templates, cl_completepct, cl_listwid, cl_olilen, |
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| 45 | - cl_completeflag, cl_tplflag, cl_outbinflag, |
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| 46 | - cl_dbgapsflag, cl_t2uflag, cl_u2tflag, |
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| 47 | - cl_upcaseflag, cl_locaseflag, cl_debugflag, |
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| 48 | - cl_htmlflag |
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| 49 | |
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| 50 | |
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| 51 | |
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| 52 | C |
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| 53 | C New unaligned sequences and names |
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| 54 | C |
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| 55 | C CHARACTER*80 IO_fnms(ndx_ingbk), IO_fnms(ndx_inkey), IO_fnms(ndx_intbl) |
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| 56 | C INTEGER IO_luns(ndx_ingbk), IO_luns(ndx_inkey), IO_luns(ndx_intbl) |
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| 57 | C LOGICAL IO_flags(ndx_ingbk), IO_flags(ndx_inkey), IO_flags(ndx_intbl) |
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| 58 | CC |
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| 59 | CC Database of aligned sequences |
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| 60 | CC |
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| 61 | C CHARACTER*80 IO_fnms(ndx_dbgbk), cl_dbkeyfnm, cl_dbtblfnm, IO_fnms(ndx_dbbin) |
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| 62 | C INTEGER IO_luns(ndx_dbgbk), cl_dbkeylun, cl_dbtbllun, IO_luns(ndx_dbbin) |
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| 63 | C LOGICAL IO_flags(ndx_dbgbk), cl_dbkeyflag, cl_dbtblflag, IO_flags(ndx_dbbin) |
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| 64 | CC |
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| 65 | CC Matrices |
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| 66 | CC |
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| 67 | C CHARACTER*80 IO_fnms(ndx_bpmat) |
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| 68 | C INTEGER IO_luns(ndx_bpmat) |
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| 69 | C LOGICAL IO_flags(ndx_bpmat) |
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| 70 | CC |
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| 71 | CC |
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| 72 | CC Output of aligned sequences and names |
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| 73 | CC |
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| 74 | C CHARACTER*80 IO_fnms(ndx_outgbk), cl_outkeyfnm, cl_outrulfnm, |
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| 75 | C - cl_outtblfnm, cl_outhumfnm, cl_outsabfnm |
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| 76 | C INTEGER IO_luns(ndx_outgbk), IO_luns(ndx_outkey), IO_luns(ndx_outrul), |
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| 77 | C - IO_luns(ndx_outtbl), cl_outhumlun, IO_luns(ndx_outsab) |
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| 78 | C LOGICAL IO_flags(ndx_outgbk), IO_flags(ndx_outkey), IO_flags(ndx_outrul), |
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| 79 | C - IO_flags(ndx_outtbl), cl_outhumflag, cl_outsabflag |
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| 80 | CC |
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| 81 | CC Log and error messages |
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| 82 | CC |
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| 83 | C CHARACTER*80 IO_fnms(ndx_err), IO_fnms(ndx_log) |
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| 84 | C INTEGER IO_luns(ndx_err), IO_luns(ndx_log) |
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| 85 | C INTEGER IO_flags(ndx_err), IO_flags(ndx_log) |
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| 86 | CC |
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| 87 | CC Options |
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| 88 | CC |
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| 89 | C INTEGER cl_templates |
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| 90 | C REAL cl_completepct |
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| 91 | C INTEGER cl_listwid |
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| 92 | C INTEGER cl_olilen |
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| 93 | C |
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| 94 | C LOGICAL cl_completeflag, cl_tplflag, IO_flags(ndx_outbin), |
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| 95 | C - cl_dbgapsflag, cl_t2uflag, cl_u2tflag, |
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| 96 | C - cl_upcaseflag, cl_locaseflag, cl_debugflag |
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| 97 | CC |
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| 98 | CC Common block for everything that relates to command line |
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| 99 | CC |
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| 100 | C COMMON / IO / |
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| 101 | C - IO_fnms(ndx_ingbk), IO_fnms(ndx_inkey), IO_fnms(ndx_intbl), |
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| 102 | C - IO_luns(ndx_ingbk), IO_luns(ndx_inkey), IO_luns(ndx_intbl), |
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| 103 | C - IO_flags(ndx_ingbk), IO_flags(ndx_inkey), IO_flags(ndx_intbl), |
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| 104 | C - IO_fnms(ndx_dbgbk), cl_dbkeyfnm, cl_dbtblfnm, IO_fnms(ndx_dbbin), |
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| 105 | C - IO_luns(ndx_dbgbk), cl_dbkeylun, cl_dbtbllun, IO_luns(ndx_dbbin), |
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| 106 | C - IO_flags(ndx_dbgbk), cl_dbkeyflag, cl_dbtblflag, IO_flags(ndx_dbbin), |
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| 107 | C - IO_fnms(ndx_bpmat), IO_luns(ndx_bpmat), IO_flags(ndx_bpmat), |
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| 108 | C - IO_fnms(ndx_outgbk), cl_outkeyfnm, cl_outrulfnm, |
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| 109 | C - cl_outtblfnm, cl_outhumfnm, cl_outsabfnm, |
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| 110 | C - IO_luns(ndx_outgbk), IO_luns(ndx_outkey), IO_luns(ndx_outrul), |
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| 111 | C - IO_luns(ndx_outtbl), cl_outhumlun, IO_luns(ndx_outsab), |
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| 112 | C - IO_flags(ndx_outgbk), IO_flags(ndx_outkey), IO_flags(ndx_outrul), |
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| 113 | C - IO_flags(ndx_outtbl), cl_outhumflag, cl_outsabflag, |
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| 114 | C - IO_fnms(ndx_err), IO_fnms(ndx_log), |
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| 115 | C - IO_luns(ndx_err), IO_luns(ndx_log), |
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| 116 | C - IO_flags(ndx_err), IO_flags(ndx_log), |
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| 117 | C - cl_templates, cl_completepct, cl_listwid, cl_olilen, |
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| 118 | C - cl_completeflag, cl_tplflag, IO_flags(ndx_outbin), |
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| 119 | C - cl_dbgapsflag, cl_t2uflag, cl_u2tflag, |
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| 120 | C - cl_upcaseflag, cl_locaseflag, cl_debugflag |
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| 121 | C |
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