| 1 | C |
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| 2 | C Max number of open logical units ( = file handles = io channels) |
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| 3 | C |
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| 4 | c INTEGER lundim |
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| 5 | c PARAMETER (lundim = 100) |
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| 6 | C |
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| 7 | C Number of indices of IO arrays, |
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| 8 | C |
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| 9 | INTEGER ndx_max |
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| 10 | PARAMETER (ndx_max = 17) |
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| 11 | C |
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| 12 | C Fixed parameters, that set the limits within which MALLOC allocates. |
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| 13 | C These values could be very large, they dont themselves cause memory |
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| 14 | C consumption. This is the only place you need to edit parameters |
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| 15 | C before you recompile. |
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| 16 | C |
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| 17 | C ** overflow checking only partially ok, needs work ** |
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| 18 | C |
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| 19 | INTEGER tuplenmax |
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| 20 | PARAMETER (tuplenmax = 10) ! oligo length maximum |
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| 21 | |
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| 22 | INTEGER tupdimmax |
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| 23 | PARAMETER (tupdimmax = 4 ** tuplenmax) ! max number of different oligos |
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| 24 | C |
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| 25 | C Parameters for GenBank alignment file |
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| 26 | C |
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| 27 | INTEGER old_seqsdim |
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| 28 | PARAMETER (old_seqsdim = 5000) ! max number of old seqs |
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| 29 | |
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| 30 | INTEGER old_basdim |
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| 31 | PARAMETER (old_basdim = 10000) ! max AVERAGE # bases / seq |
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| 32 | |
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| 33 | INTEGER old_bytdim |
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| 34 | PARAMETER (old_bytdim = old_seqsdim * old_basdim) |
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| 35 | |
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| 36 | INTEGER old_tbldim |
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| 37 | PARAMETER (old_tbldim = old_basdim * old_seqsdim + tupdimmax) |
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| 38 | |
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| 39 | INTEGER old_sidswid |
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| 40 | PARAMETER (old_sidswid = 10) ! max short-ID width |
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| 41 | |
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| 42 | INTEGER old_lidswid |
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| 43 | PARAMETER (old_lidswid = 80) ! max length of full names |
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| 44 | C |
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| 45 | C Parameters for unaligned GenBank file |
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| 46 | C |
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| 47 | INTEGER new_seqsdim |
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| 48 | PARAMETER (new_seqsdim = 5000) ! max number of new seqs |
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| 49 | |
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| 50 | INTEGER new_basdim |
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| 51 | PARAMETER (new_basdim = 10000) ! currently new sequence length |
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| 52 | |
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| 53 | INTEGER new_bytdim |
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| 54 | PARAMETER (new_bytdim = new_seqsdim * new_basdim) |
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| 55 | |
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| 56 | INTEGER new_sidswid |
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| 57 | PARAMETER (new_sidswid = 10) ! max short-ID width |
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| 58 | |
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| 59 | INTEGER new_lidswid |
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| 60 | PARAMETER (new_lidswid = 80) ! max length of full names |
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| 61 | |
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| 62 | INTEGER new_textwid |
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| 63 | PARAMETER (new_textwid = 80) ! max length of input file lines |
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| 64 | |
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