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source: tags/initial/NTREE/ad_spec.cxx

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Last change on this file was 2, checked in by oldcode, 24 years ago
Initial revision
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 27.7 KB

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1	#include <stdio.h>
2	#include <string.h>
3	#include <arbdb.h>
4	#include <arbdbt.h>
5	#include <aw_root.hxx>
6	#include <aw_device.hxx>
7	#include <aw_window.hxx>
8	#include <aw_awars.hxx>
9	#include "ad_spec.hxx"
10	#include <awt.hxx>
11	#include <awt_www.hxx>
12	#include <awt_tree.hxx>
13	#include <awt_canvas.hxx>
14	#include <awt_dtree.hxx>
15	#include <awtlocal.hxx>
16	#include <awtc_next_neighbours.hxx>
17	#include <ntree.hxx>
18
19	extern GBDATA *gb_main;
20	#define AD_F_ALL (AW_active)-1
21
22	void create_species_var(AW_root *aw_root, AW_default aw_def)
23	{
24	// aw_root->awar_string( AWAR_SPECIES_NAME, "" , gb_main);
25	aw_root->awar_string( AWAR_SPECIES_DEST, "" , aw_def);
26	aw_root->awar_string( AWAR_SPECIES_INFO, "" , aw_def);
27	aw_root->awar_string( AWAR_SPECIES_KEY, "" , aw_def);
28	aw_root->awar_string( AWAR_FIELD_REORDER_SOURCE, "" , aw_def);
29	aw_root->awar_string( AWAR_FIELD_REORDER_DEST, "" , aw_def);
30	aw_root->awar_string( AWAR_FIELD_CREATE_NAME, "" , aw_def);
31	aw_root->awar_int( AWAR_FIELD_CREATE_TYPE, GB_STRING, aw_def );
32	aw_root->awar_string( AWAR_FIELD_DELETE, "" , aw_def);
33
34	}
35
36	void species_rename_cb(AW_window *aww){
37	GB_ERROR error = 0;
38	char *source = aww->get_root()->awar(AWAR_SPECIES_NAME)->read_string();
39	char *dest = aww->get_root()->awar(AWAR_SPECIES_DEST)->read_string();
40	GBT_begin_rename_session(gb_main,0);
41	error = GBT_rename_species(source,dest);
42	if (!error) {
43	aww->get_root()->awar(AWAR_SPECIES_NAME)->write_string(dest);
44	}
45	if (!error) GBT_commit_rename_session(0);
46	else GBT_abort_rename_session();
47	if (error) aw_message(error);
48	delete source;
49	delete dest;
50	}
51
52	void species_copy_cb(AW_window *aww){
53	GB_ERROR error = 0;
54	char *source = aww->get_root()->awar(AWAR_SPECIES_NAME)->read_string();
55	char *dest = aww->get_root()->awar(AWAR_SPECIES_DEST)->read_string();
56	GB_begin_transaction(gb_main);
57	GBDATA *gb_species_data = GB_search(gb_main,"species_data",GB_CREATE_CONTAINER);
58	GBDATA *gb_species = GBT_find_species_rel_species_data(gb_species_data,source);
59	GBDATA *gb_dest = GBT_find_species_rel_species_data(gb_species_data,dest);
60	if (gb_dest) {
61	error = "Sorry: species already exists";
62	}else if (gb_species) {
63	gb_dest = GB_create_container(gb_species_data,"species");
64	error = GB_copy(gb_dest,gb_species);
65	if (!error) {
66	GBDATA *gb_name =
67	GB_search(gb_dest,"name",GB_STRING);
68	error = GB_write_string(gb_name,dest);
69	}
70	if (!error) {
71	aww->get_root()->awar(AWAR_SPECIES_NAME)->write_string(dest);
72	}
73	}else{
74	error = "Please select a species first";
75	}
76	if (!error){
77	aww->hide();
78	GB_commit_transaction(gb_main);
79	}else{
80	GB_abort_transaction(gb_main);
81	}
82	if (error) aw_message(error);
83	delete source;
84	delete dest;
85	}
86
87	void move_species_to_extended(AW_window *aww){
88	GB_ERROR error = 0;
89	char *source = aww->get_root()->awar(AWAR_SPECIES_NAME)->read_string();
90	GB_begin_transaction(gb_main);
91
92	GBDATA *gb_extended_data = GB_search(gb_main,"extended_data",GB_CREATE_CONTAINER);
93	GBDATA *gb_species = GBT_find_species(gb_main,source);
94	GBDATA *gb_dest = GBT_find_SAI_rel_exdata(gb_extended_data,source);
95	if (gb_dest) {
96	error = "Sorry: SAI already exists";
97	}else if (gb_species) {
98	gb_dest = GB_create_container(gb_extended_data,"extended");
99	error = GB_copy(gb_dest,gb_species);
100	if (!error) {
101	error = GB_delete(gb_species);
102	if (!error) {
103	aww->get_root()->awar(AWAR_SPECIES_NAME)->write_string("");
104	}
105	}
106	}else{
107	error = "Please select a species first";
108	}
109
110	if (!error) GB_commit_transaction(gb_main);
111	else GB_abort_transaction(gb_main);
112	if (error) aw_message(error);
113	delete source;
114	}
115
116
117	void species_create_cb(AW_window *aww){
118	GB_ERROR error = 0;
119	char *dest = aww->get_root()->awar(AWAR_SPECIES_DEST)->read_string();
120	GB_begin_transaction(gb_main);
121	GBDATA *gb_species_data = GB_search(gb_main,"species_data",GB_CREATE_CONTAINER);
122	GBDATA *gb_dest = GBT_find_species_rel_species_data(gb_species_data,dest);
123	if (gb_dest) {
124	error = "Sorry: species already exists";
125	}else{
126	gb_dest = GBT_create_species_rel_species_data(gb_species_data,dest);
127	if (!gb_dest) error = GB_get_error();
128	if (!error) {
129	aww->get_root()->awar(AWAR_SPECIES_NAME)->write_string(dest);
130	}
131	}
132	if (!error) GB_commit_transaction(gb_main);
133	else GB_abort_transaction(gb_main);
134	if (error) aw_message(error);
135	delete dest;
136	}
137
138	AW_window create_species_rename_window(AW_root root)
139	{
140	AW_window_simple *aws = new AW_window_simple;
141	aws->init( root, "RENAME_SPECIES", "SPECIES RENAME", 100, 100 );
142	aws->load_xfig("ad_al_si.fig");
143
144	aws->callback( (AW_CB0)AW_POPDOWN);
145	aws->at("close");
146	aws->create_button("CLOSE","CLOSE","C");
147
148	aws->at("label");
149	aws->create_button(0,"Please enter the new name\nof the species");
150
151	aws->at("input");
152	aws->create_input_field(AWAR_SPECIES_DEST,15);
153
154	aws->at("ok");
155	aws->callback(species_rename_cb);
156	aws->create_button("GO","GO","G");
157
158	return (AW_window *)aws;
159	}
160
161	AW_window create_species_copy_window(AW_root root)
162	{
163	AW_window_simple *aws = new AW_window_simple;
164	aws->init( root, "COPY_SPECIES", "SPECIES COPY", 100, 100 );
165	aws->load_xfig("ad_al_si.fig");
166
167	aws->callback( (AW_CB0)AW_POPDOWN);
168	aws->at("close");
169	aws->create_button("CLOSE","CLOSE","C");
170
171	aws->at("label");
172	aws->create_button(0,"Please enter the name\nof the new species");
173
174	aws->at("input");
175	aws->create_input_field(AWAR_SPECIES_DEST,15);
176
177	aws->at("ok");
178	aws->callback(species_copy_cb);
179	aws->create_button("GO","GO","G");
180
181	return (AW_window *)aws;
182	}
183
184	AW_window create_species_create_window(AW_root root)
185	{
186	AW_window_simple *aws = new AW_window_simple;
187	aws->init( root, "CREATE_SPECIES","SPECIES CREATE", 100, 100 );
188	aws->load_xfig("ad_al_si.fig");
189
190	aws->callback( (AW_CB0)AW_POPDOWN);
191	aws->at("close");
192	aws->create_button("CLOSE","CLOSE","C");
193
194	aws->at("label");
195	aws->create_button(0,"Please enter the name\nof the new species");
196
197	aws->at("input");
198	aws->create_input_field(AWAR_SPECIES_DEST,15);
199
200	aws->at("ok");
201	aws->callback(species_create_cb);
202	aws->create_button("GO","GO","G");
203
204	return (AW_window *)aws;
205	}
206
207	void ad_species_delete_cb(AW_window *aww){
208	if (aw_message("Are you sure to delete the species","OK,CANCEL"))return;
209	GB_ERROR error = 0;
210	char *source = aww->get_root()->awar(AWAR_SPECIES_NAME)->read_string();
211	GB_begin_transaction(gb_main);
212	GBDATA *gb_species = GBT_find_species(gb_main,source);
213
214	if (gb_species) error = GB_delete(gb_species);
215	else error = "Please select a species first";
216
217	if (!error) GB_commit_transaction(gb_main);
218	else GB_abort_transaction(gb_main);
219
220	if (error) aw_message(error);
221	delete source;
222	}
223	static AW_CL ad_global_scannerid = 0;
224	static AW_root *ad_global_scannerroot = 0;
225
226	void AD_map_species(AW_root *aw_root, AW_CL scannerid)
227	{
228	GB_push_transaction(gb_main);
229	char *source = aw_root->awar(AWAR_SPECIES_NAME)->read_string();
230	GBDATA *gb_species = GBT_find_species(gb_main,source);
231	if (gb_species)
232	awt_map_arbdb_scanner(scannerid,gb_species,0);
233	GB_pop_transaction(gb_main);
234	delete source;
235	}
236
237	void AD_map_viewer(GBDATA *gbd,AD_MAP_VIEWER_TYPE type)
238	{
239	GB_push_transaction(gb_main);
240	if (ad_global_scannerid){
241	GBDATA *gb_species_data = GB_search(gb_main,"species_data",GB_CREATE_CONTAINER);
242	if (gbd && GB_get_father(gbd)==gb_species_data) {
243	// I got a species !!!!!!
244	GBDATA *gb_name = GB_find(gbd,"name",0,down_level);
245	if (gb_name) {
246	char *name = GB_read_string(gb_name);
247	ad_global_scannerroot->awar(AWAR_SPECIES_NAME)->write_string(name);
248	// that will map the species
249	}else{
250	ad_global_scannerroot->awar(AWAR_SPECIES_NAME)->write_string("");
251	awt_map_arbdb_scanner(ad_global_scannerid,gbd,0);
252	// do it by hand
253	}
254	}else{
255	ad_global_scannerroot->awar(AWAR_SPECIES_NAME)->write_string("");
256	awt_map_arbdb_scanner(ad_global_scannerid,gbd,0);
257	// do it by hand
258	}
259	}
260	while (gbd && type == ADMVT_WWW){
261	char *name = strdup("noname");
262	GBDATA *gb_name = GB_find(gbd,"name",0,down_level);
263	if (!gb_name) gb_name = GB_find(gbd,"group_name",0,down_level); // bad hack, should work
264	if (gb_name){
265	delete name;
266	name = GB_read_string(gb_name);
267	}
268	GB_ERROR error = awt_openURL_by_gbd(nt.awr,gb_main,gbd, name);
269	if (error) aw_message(error);
270	break;
271	}
272	GB_pop_transaction(gb_main);
273	}
274
275	void ad_list_reorder_cb(AW_window *aws) {
276	GB_begin_transaction(gb_main);
277	char *source = aws->get_root()->awar(AWAR_FIELD_REORDER_SOURCE)->read_string();
278	char *dest = aws->get_root()->awar(AWAR_FIELD_REORDER_DEST)->read_string();
279	GB_ERROR warning = 0;
280
281	GBDATA *gb_source = awt_get_key(gb_main,source);
282	GBDATA *gb_dest = awt_get_key(gb_main,dest);
283	GBDATA *gb_key_data =
284	GB_search(gb_main,CHANGE_KEY_PATH,GB_CREATE_CONTAINER);
285	if (!gb_source) {
286	aw_message("Please select an item you want to move (left box)");
287	}
288	if (gb_source &&!gb_dest) {
289	aw_message("Please select a destination where to place your item (right box)");
290	}
291	if (gb_source && gb_dest && (gb_dest !=gb_source) ) {
292	GBDATA **new_order;
293	int nitems = 0;
294	GBDATA *gb_cnt;
295	for ( gb_cnt = GB_find(gb_key_data,0,0,down_level);
296	gb_cnt;
297	gb_cnt = GB_find(gb_cnt,0,0,this_level\|search_next)){
298	nitems++;
299	}
300	new_order = new GBDATA *[nitems];
301	nitems = 0;
302	for ( gb_cnt = GB_find(gb_key_data,0,0,down_level);
303	gb_cnt;
304	gb_cnt = GB_find(gb_cnt,0,0,this_level\|search_next)){
305	if (gb_cnt == gb_source) continue;
306	new_order[nitems++] = gb_cnt;
307	if (gb_cnt == gb_dest) {
308	new_order[nitems++] = gb_source;
309	}
310	}
311	warning = GB_resort_data_base(gb_main,new_order,nitems);
312	delete new_order;
313	}
314
315	delete source;
316	delete dest;
317	GB_commit_transaction(gb_main);
318	if (warning) aw_message(warning);
319	}
320
321	AW_window create_ad_list_reorder(AW_root root)
322	{
323	static AW_window_simple *aws = 0;
324	if (aws) return (AW_window *)aws;
325	aws = new AW_window_simple;
326	aws->init( root, "REORDER_FIELDS", "REORDER FIELDS",600, 200 );
327	aws->load_xfig("ad_kreo.fig");
328
329	aws->callback( (AW_CB0)AW_POPDOWN);
330	aws->at("close");
331	aws->create_button("CLOSE","CLOSE","C");
332
333	aws->at("doit");
334	aws->button_length(0);
335	aws->callback(ad_list_reorder_cb);
336	aws->help_text("spaf_reorder.hlp");
337	aws->create_button("MOVE_TO_NEW_POSITION",
338	"MOVE SELECTED LEFT ITEM\nAFTER SELECTED RIGHT ITEM","P");
339
340	awt_create_selection_list_on_scandb(gb_main,
341	(AW_window*)aws,AWAR_FIELD_REORDER_SOURCE,
342	AWT_NDS_FILTER,
343	"source",0);
344	awt_create_selection_list_on_scandb(gb_main,
345	(AW_window*)aws,AWAR_FIELD_REORDER_DEST,
346	AWT_NDS_FILTER,
347	"dest",0);
348
349	return (AW_window *)aws;
350	}
351
352	void ad_field_only_delete(AW_window *aws)
353	{
354	AWUSE(aws);
355
356	GB_begin_transaction(gb_main);
357	char *source = aws->get_root()->awar(AWAR_FIELD_DELETE)->read_string();
358	GB_ERROR error = 0;
359
360	GBDATA *gb_source = awt_get_key(gb_main,source);
361	if (!gb_source) {
362	aw_message("Please select an item you want to delete");
363	}else{
364	error = GB_delete(gb_source);
365	}
366	delete source;
367	if (error) {
368	GB_abort_transaction(gb_main);
369	if (error) aw_message(error);
370	}else{
371	GB_commit_transaction(gb_main);
372	}
373	}
374
375	void ad_field_delete(AW_window *aws)
376	{
377	AWUSE(aws);
378
379	GB_begin_transaction(gb_main);
380	char *source = aws->get_root()->awar(AWAR_FIELD_DELETE)->read_string();
381	GB_ERROR error = 0;
382
383	GBDATA *gb_source = awt_get_key(gb_main,source);
384	if (!gb_source) {
385	aw_message("Please select an item you want to delete");
386	}else{
387	error = GB_delete(gb_source);
388	}
389	GBDATA *gb_species;
390
391	for (gb_species = GBT_first_species(gb_main);
392	!error && gb_species;
393	gb_species = GBT_next_species(gb_species)){
394	GBDATA *gbd = GB_search(gb_species,source,GB_FIND);
395	if (gbd){
396	error = GB_delete(gbd);
397	}
398	}
399
400	delete source;
401	if (error) {
402	GB_abort_transaction(gb_main);
403	if (error) aw_message(error);
404	}else{
405	GB_commit_transaction(gb_main);
406	}
407	}
408
409	AW_window create_ad_field_delete(AW_root root)
410	{
411	static AW_window_simple *aws = 0;
412	if (aws) return (AW_window *)aws;
413	aws = new AW_window_simple;
414	aws->init( root, "DELETE_FIELD", "DELETE FIELD", 600, 200 );
415	aws->load_xfig("ad_delof.fig");
416	aws->button_length(6);
417
418	aws->at("close");aws->callback( AW_POPDOWN);
419	aws->create_button("CLOSE","CLOSE","C");
420
421	aws->at("help");aws->callback( AW_POPUP_HELP,(AW_CL)"spaf_delete.hlp");
422	aws->create_button("HELP","HELP","H");
423
424	aws->at("doit");
425	aws->callback(ad_field_only_delete);
426	aws->help_text("rm_field_only.hlp");
427	aws->create_button("HIDE_FIELD","HIDE FIELD\n(NOTHING DELETED)","F");
428
429	aws->at("delf");
430	aws->callback(ad_field_delete);
431	aws->help_text("rm_field_cmpt.hlp");
432	aws->create_button("DELETE_FIELD", "DELETE FIELD\n(DATA DELETED)","C");
433
434	awt_create_selection_list_on_scandb(gb_main,
435	(AW_window*)aws,AWAR_FIELD_DELETE,
436	-1,
437	"source",0);
438
439	return (AW_window *)aws;
440	}
441
442	void ad_field_create_cb(AW_window *aws)
443	{
444	GB_push_transaction(gb_main);
445	char *name = aws->get_root()->awar(AWAR_FIELD_CREATE_NAME)->read_string();
446	GB_ERROR error = GB_check_key(name);
447	GB_ERROR error2 = GB_check_hkey(name);
448	if (error && !error2) {
449	aw_message("Warning: Your key contain a '/' character,\n"
450	" that means it is a hierarchical key");
451	error = 0;
452	}
453
454	int type = (int)aws->get_root()->awar(AWAR_FIELD_CREATE_TYPE)->read_int();
455
456	if(!error) error = awt_add_new_changekey(gb_main, name, type);
457	if (error) {
458	aw_message(error);
459	}else{
460	aws->hide();
461	}
462	delete name;
463	GB_pop_transaction(gb_main);
464	}
465
466	AW_window create_ad_field_create(AW_root root)
467	{
468	static AW_window_simple *aws = 0;
469	if (aws) return (AW_window *)aws;
470	aws = new AW_window_simple;
471	aws->init( root, "CREATE_FIELD","CREATE A NEW FIELD", 400, 100 );
472	aws->load_xfig("ad_fcrea.fig");
473
474	aws->callback( (AW_CB0)AW_POPDOWN);
475	aws->at("close");
476	aws->create_button("CLOSE","CLOSE","C");
477
478
479	aws->at("input");
480	aws->label("FIELD NAME");
481	aws->create_input_field(AWAR_FIELD_CREATE_NAME,15);
482
483	aws->at("type");
484	aws->create_toggle_field(AWAR_FIELD_CREATE_TYPE,"FIELD TYPE","F");
485	aws->insert_toggle("Ascii Text","S", (int)GB_STRING);
486	aws->insert_toggle("Link","L", (int)GB_LINK);
487	aws->insert_toggle("Rounded Numerical","N", (int)GB_INT);
488	aws->insert_toggle("Numerical","R", (int)GB_FLOAT);
489	aws->insert_toggle("MASK = 01 Text","0", (int)GB_BITS);
490	aws->update_toggle_field();
491
492
493	aws->at("ok");
494	aws->callback(ad_field_create_cb);
495	aws->create_button("CREATE","CREATE","C");
496
497	return (AW_window *)aws;
498	}
499
500	void ad_spec_create_field_items(AW_window *aws) {
501	aws->insert_menu_topic("reorder_fields", "Reorder Fields ...", "r","spaf_reorder.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_ad_list_reorder, 0 );
502	aws->insert_menu_topic("delete_field", "Delete/Hide Field ...","D","spaf_delete.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_ad_field_delete, 0 );
503	aws->insert_menu_topic("create_field", "Create Field ...", "C","spaf_create.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_ad_field_create, 0 );
504	aws->insert_menu_topic("unhide_fields", "Scan Database for all Hidden Fields","S","scandb.hlp",AD_F_ALL,(AW_CB)awt_selection_list_rescan_cb, (AW_CL)gb_main, AWT_NDS_FILTER );
505	}
506
507	#include <probe_design.hxx>
508
509	void awtc_nn_search_all_listed(AW_window *aww,AW_CL _cbs ){
510	struct adaqbsstruct cbs = (struct adaqbsstruct )_cbs;
511	GB_begin_transaction(gb_main);
512	int pts = aww->get_root()->awar(AWAR_PROBE_ADMIN_PT_SERVER)->read_int();
513	char *dest_field = aww->get_root()->awar("next_neighbours/dest_field")->read_string();
514	char *ali_name = aww->get_root()->awar(AWAR_DEFAULT_ALIGNMENT)->read_string();
515	GB_ERROR error = 0;
516	GB_TYPES dest_type = awt_get_type_of_changekey(gb_main,dest_field);
517	if (!dest_type){
518	error = GB_export_error("Please select a valid field");
519	}
520	long max = awt_count_queried_species(cbs);
521
522	if (strcmp(dest_field, "name")==0) {
523	int answer = aw_message("CAUTION! This will destroy all name-fields of the listed species.\n",
524	"Continue and destroy all name-fields,Abort");
525
526	if (answer==1) {
527	error = GB_export_error("Aborted by user");
528	}
529	}
530
531	aw_openstatus("Finding next neighbours");
532	long count = 0;
533	GBDATA *gb_species;
534	for (gb_species = GBT_first_species(gb_main);
535	!error && gb_species;
536	gb_species = GBT_next_species(gb_species)){
537	if (!IS_QUERIED(gb_species,cbs)) continue;
538	count ++;
539	GBDATA *gb_data = GBT_read_sequence(gb_species,ali_name);
540	if (!gb_data) continue;
541	if (count %10 == 0){
542	GBDATA *gb_name = GB_search(gb_species,"name",GB_STRING);
543	aw_status(GBS_global_string("Species '%s' (%i:%i)",
544	GB_read_char_pntr(gb_name),
545	count, max));
546	}
547	if (aw_status(count/(double)max)){
548	error = "operation aborted";
549	break;
550	}
551	{
552	char *sequence = GB_read_string(gb_data);
553	AWTC_FIND_FAMILY ff(gb_main);
554	error = ff.go(pts,sequence,GB_TRUE,1);
555	if (error) break;
556	{
557	AWTC_FIND_FAMILY_MEMBER *fm = ff.family_list;
558	const char *value;
559	if (fm){
560	value = GBS_global_string("%i '%s'",fm->matches,fm->name);
561	}else{
562	value = "0";
563	}
564	GBDATA *gb_dest = GB_search(gb_species,dest_field,dest_type);
565	error = GB_write_as_string(gb_dest,value);
566	}
567	delete sequence;
568	}
569	}
570	aw_closestatus();
571	if (error){
572	GB_abort_transaction(gb_main);
573	aw_message(error);
574	}else{
575	GB_commit_transaction(gb_main);
576	}
577	delete dest_field;
578	delete ali_name;
579	}
580	void awtc_nn_search(AW_window *aww,AW_CL id ){
581	GB_transaction dummy(gb_main);
582	int pts = aww->get_root()->awar(AWAR_PROBE_ADMIN_PT_SERVER)->read_int();
583	int max_hits = aww->get_root()->awar("next_neighbours/max_hits")->read_int();
584	char *sequence = 0;
585	{
586	char *sel_species = aww->get_root()->awar(AWAR_SPECIES_NAME)->read_string();
587	GBDATA *gb_species = GBT_find_species(gb_main,sel_species);
588
589	if (!gb_species){
590	delete sel_species;
591	aw_message("Select a species first");
592	return;
593	}
594	char *ali_name = aww->get_root()->awar(AWAR_DEFAULT_ALIGNMENT)->read_string();
595	GBDATA *gb_data = GBT_read_sequence(gb_species,ali_name);
596	if (!gb_data){
597	aw_message(GBS_global_string("Species '%s' has no sequence '%s'",sel_species,ali_name));
598	}
599	delete sel_species;
600	delete ali_name;
601	if (!gb_data) return;
602	sequence = GB_read_string(gb_data);
603	}
604
605	AWTC_FIND_FAMILY ff(gb_main);
606	GB_ERROR error = ff.go(pts,sequence,GB_TRUE,max_hits);
607	delete sequence;
608	AW_selection_list* sel = (AW_selection_list *)id;
609	aww->clear_selection_list(sel);
610	if (error) {
611	aw_message(error);
612	aww->insert_default_selection(sel,"No hits found","");
613	}else{
614	AWTC_FIND_FAMILY_MEMBER *fm;
615	for (fm = ff.family_list; fm; fm = fm->next){
616	const char *dis = GBS_global_string("%-20s Score:%4i",fm->name,fm->matches);
617	aww->insert_selection(sel,(char *)dis,fm->name);
618	}
619
620	aww->insert_default_selection(sel,"No more hits","");
621	}
622	aww->update_selection_list(sel);
623	}
624	void awtc_move_hits(AW_window *,AW_CL id, AW_CL cbs){
625	awt_copy_selection_list_2_queried_species((struct adaqbsstruct )cbs,(AW_selection_list )id);
626	}
627
628	AW_window ad_spec_next_neighbours_listed_create(AW_root aw_root,AW_CL cbs){
629	static AW_window_simple *aws = 0;
630	if (aws){
631	return (AW_window *)aws;
632	}
633	aw_root->awar_int(AWAR_PROBE_ADMIN_PT_SERVER);
634	aw_root->awar_string("next_neighbours/dest_field","tmp");
635
636	aws = new AW_window_simple;
637	aws->init( aw_root, "SEARCH_NEXT_RELATIVES_OF_LISTED", "Search Next Neighbours of Listed", 600, 0 );
638	aws->load_xfig("ad_spec_nnm.fig");
639
640	aws->at("close");
641	aws->callback( (AW_CB0)AW_POPDOWN);
642	aws->create_button("CLOSE","CLOSE","C");
643
644	aws->at("help");
645	aws->callback(AW_POPUP_HELP, (AW_CL)"next_neighbours_marked.hlp");
646	aws->create_button("HELP","HELP","H");
647
648	aws->at("pt_server");
649	probe_design_build_pt_server_choices(aws,AWAR_PROBE_ADMIN_PT_SERVER,AW_FALSE);
650
651
652
653	aws->at("field");
654	awt_create_selection_list_on_scandb(gb_main,aws,"next_neighbours/dest_field",
655	(1<<GB_INT) \| (1<<GB_STRING), "field",0);
656
657
658	aws->at("go");
659	aws->callback(awtc_nn_search_all_listed,cbs);
660	aws->create_button("SEARCH","SEARCH");
661
662	return (AW_window *)aws;
663	}
664
665	AW_window ad_spec_next_neighbours_create(AW_root aw_root,AW_CL cbs){
666	static AW_window_simple *aws = 0;
667	if (aws){
668	return (AW_window *)aws;
669	}
670	aw_root->awar_int(AWAR_PROBE_ADMIN_PT_SERVER);
671	aw_root->awar_int("next_neighbours/max_hits",20);
672
673	aws = new AW_window_simple;
674	aws->init( aw_root, "SEARCH_NEXT_RELATIVE_OF_SELECTED", "Search Next Neighbours", 600, 0 );
675	aws->load_xfig("ad_spec_nn.fig");
676
677	aws->at("close");
678	aws->callback( (AW_CB0)AW_POPDOWN);
679	aws->create_button("CLOSE","CLOSE","C");
680
681	aws->at("help");
682	aws->callback(AW_POPUP_HELP, (AW_CL)"next_neighbours.hlp");
683	aws->create_button("HELP","HELP","H");
684
685	aws->at("pt_server");
686	probe_design_build_pt_server_choices(aws,AWAR_PROBE_ADMIN_PT_SERVER,AW_FALSE);
687
688	aws->at("max_hit");
689	aws->create_input_field("next_neighbours/max_hits",5);
690
691	aws->at("hits");
692	AW_selection_list *id = aws->create_selection_list(AWAR_SPECIES_NAME);
693	aws->insert_default_selection(id,"No hits found","");
694	aws->update_selection_list(id);
695
696	aws->at("go");
697	aws->callback(awtc_nn_search,(AW_CL)id);
698	aws->create_button("SEARCH","SEARCH");
699
700	aws->at("move");
701	aws->callback(awtc_move_hits,(AW_CL)id,cbs);
702	aws->create_button("MOVE_TO_HITLIST","MOVE TO HITLIST");
703
704	return (AW_window *)aws;
705	}
706	AW_window create_species_window(AW_root aw_root)
707	{
708	static AW_window_simple_menu *aws = 0;
709	if (aws){
710	return (AW_window *)aws;
711	}
712	aws = new AW_window_simple_menu;
713	aws->init( aw_root, "SPECIES_INFORMATION", "SPECIES INFORMATION", 0,0,800, 0 );
714	aws->load_xfig("ad_spec.fig");
715
716	aws->button_length(8);
717
718	aws->at("close");
719	aws->callback( (AW_CB0)AW_POPDOWN);
720	aws->create_button("CLOSE","CLOSE","C");
721
722	aws->at("search");
723	aws->callback(AW_POPUP, (AW_CL)ad_create_query_window, 0);
724	aws->create_button("SEARCH","SEARCH","S");
725
726	aws->at("help");
727	aws->callback(AW_POPUP_HELP, (AW_CL)"species_info.hlp");
728	aws->create_button("HELP","HELP","H");
729
730
731	AW_CL scannerid = awt_create_arbdb_scanner(gb_main, aws, "box",0,"field","enable",AWT_VIEWER,0,"mark",AWT_NDS_FILTER);
732	ad_global_scannerid = scannerid;
733	ad_global_scannerroot = aws->get_root();
734
735	aws->create_menu( 0, "SPECIES", "E", "spa_species.hlp", AD_F_ALL );
736	aws->insert_menu_topic("species_delete", "Delete", "D","spa_delete.hlp", AD_F_ALL, (AW_CB)ad_species_delete_cb, 0, 0);
737	aws->insert_menu_topic("species_rename", "Rename ...", "R","spa_rename.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_species_rename_window, 0);
738	aws->insert_menu_topic("species_copy", "Copy ...", "C","spa_copy.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_species_copy_window, 0);
739	aws->insert_menu_topic("species_create", "Create ...", "R","spa_create.hlp", AD_F_ALL, AW_POPUP, (AW_CL)create_species_create_window, 0);
740	aws->insert_menu_topic("species_convert_2_sai", "Convert to SAI","E","sp_sp_2_ext.hlp",AD_F_ALL, (AW_CB)move_species_to_extended, 0, 0);
741	aws->insert_separator();
742
743	aws->create_menu( 0, "FIELDS", "I", "spa_fields.hlp", AD_F_ALL );
744	ad_spec_create_field_items(aws);
745
746	aws->get_root()->awar(AWAR_SPECIES_NAME)->add_callback( AD_map_species,scannerid);
747
748	aws->show();
749	AD_map_species(aws->get_root(),scannerid);
750	return (AW_window *)aws;
751	}
752
753	AW_CL ad_query_global_cbs = 0;
754
755	void ad_unquery_all(){
756	awt_unquery_all(0,(struct adaqbsstruct *)ad_query_global_cbs);
757	}
758
759	void ad_query_update_list(){
760	awt_query_update_list(NULL,(struct adaqbsstruct *)ad_query_global_cbs);
761	}
762
763	AW_window ad_create_query_window(AW_root aw_root)
764	{
765	static AW_window_simple_menu *aws = 0;
766	if (aws){
767	return (AW_window *)aws;
768	}
769	aws = new AW_window_simple_menu;
770	aws->init( aw_root, "SPECIES_QUERY", "SEARCH and QUERY", 0,0,500, 0 );
771	aws->create_menu(0,"MORE_FUNCTIONS","F");
772	aws->load_xfig("ad_query.fig");
773
774
775	awt_query_struct awtqs;
776
777	awtqs.gb_main = gb_main;
778	awtqs.species_name = AWAR_SPECIES_NAME;
779	awtqs.select_bit = 1;
780	awtqs.use_menu = 1;
781	awtqs.ere_pos_fig = "ere";
782	awtqs.by_pos_fig = "by";
783	awtqs.qbox_pos_fig = "qbox";
784	awtqs.rescan_pos_fig = 0;
785	awtqs.key_pos_fig = 0;
786	awtqs.query_pos_fig = "content";
787	awtqs.result_pos_fig = "result";
788	awtqs.count_pos_fig = "count";
789	awtqs.do_query_pos_fig = "doquery";
790	awtqs.do_mark_pos_fig = "domark";
791	awtqs.do_unmark_pos_fig = "dounmark";
792	awtqs.do_delete_pos_fig = "dodelete";
793	awtqs.do_set_pos_fig = "doset";
794	awtqs.do_refresh_pos_fig= "dorefresh";
795	awtqs.open_parser_pos_fig= "openparser";
796	awtqs.create_view_window= (AW_CL)create_species_window;
797	AW_CL cbs = (AW_CL)awt_create_query_box((AW_window*)aws,&awtqs);
798	ad_query_global_cbs = cbs;
799	aws->create_menu( 0, "MORE_SEARCH", "S" );
800	aws->insert_menu_topic( "search_equal_fields_within_db","Search For Equal Fields and Mark Duplikates", "E",0, -1, (AW_CB)awt_search_equal_entries, cbs, 0 );
801	aws->insert_menu_topic( "search_equal_words_within_db", "Search For Equal Words Between Fields and Mark Duplikates", "W",0, -1, (AW_CB)awt_search_equal_entries, cbs, 1 );
802	aws->insert_menu_topic( "search_next_relativ_of_sel", "Search Next Relatives of SELECTED Species in PT_Server ...", "R",0, -1, (AW_CB)AW_POPUP, (AW_CL)ad_spec_next_neighbours_create, cbs );
803	aws->insert_menu_topic( "search_next_relativ_of_listed","Search Next Relatives of LISTED Species in PT_Server ...", "M",0, -1, (AW_CB)AW_POPUP, (AW_CL)ad_spec_next_neighbours_listed_create, cbs );
804
805	aws->button_length(7);
806
807	aws->at("close");
808	aws->callback( (AW_CB0)AW_POPDOWN);
809	aws->create_button("CLOSE","CLOSE","C");
810
811	aws->at("help");
812	aws->callback( AW_POPUP_HELP,(AW_CL)"sp_search.hlp");
813	aws->create_button("HELP","HELP","H");
814
815	return (AW_window *)aws;
816	}

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