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source: tags/initial/PERL2ARB/proto.h

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Last change on this file was 2, checked in by oldcode, 25 years ago
Initial revision
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 23.7 KB

Line
1	#ifndef P_
2	# error P_ is not defined
3	#endif
4
5	#ifdef __cplusplus
6	extern "C" {
7	#endif
8
9	/* adsort.c */
10	char GBT_quicksort P_((void array, long start, long end, gb_compare_two_items_type compare, char client_data));
11	char GB_mergesort P_((void array, long start, long end, gb_compare_two_items_type compare, char client_data));
12
13	/* adlang1.c */
14
15	/* adstring.c */
16	char GB_find_latest_file P_((const char dir, const char *mask));
17	GB_ERROR GB_export_error P_((const char *templat, ...));
18	GB_ERROR GB_print_error P_((void));
19	GB_ERROR GB_get_error P_((void));
20	GB_CSTR GBS_global_string P_((const char *templat, ...));
21	char GBS_string_2_key P_((const char str));
22	GB_ERROR GB_check_key P_((const char *key));
23	GB_ERROR GB_check_link_name P_((const char *key));
24	GB_ERROR GB_check_hkey P_((const char *key));
25	char GBS_strdup P_((const char s));
26	GB_CPNTR GBS_find_string P_((const char str, const char key, long match_mode));
27	long GBS_string_scmp P_((const char str, const char search, long upper_case));
28	long GBS_string_cmp P_((const char str, const char search, long upper_case));
29	char GBS_remove_escape P_((char com));
30	void *GBS_stropen P_((long init_size));
31	char GBS_strclose P_((void strstruct, int optimize));
32	GB_CPNTR GBS_mempntr P_((void *strstruct));
33	long GBS_memoffset P_((void *strstruct));
34	void GBS_str_cut_tail P_((void *strstruct, int byte_count));
35	void GBS_strcat P_((void strstruct, const char ptr));
36	void GBS_strncat P_((void strstruct, const char ptr, long len));
37	void GBS_strnprintf P_((void strstruct, long len, const char templat, ...));
38	void GBS_chrcat P_((void *strstruct, char ch));
39	void GBS_intcat P_((void *strstruct, long val));
40	void GBS_floatcat P_((void *strstruct, double val));
41	char GBS_string_eval P_((const char insource, const char icommand, GBDATA gb_container));
42	char GBS_eval_env P_((const char p));
43	char GBS_read_arb_tcp P_((const char env));
44	char GBS_find_lib_file P_((const char filename, const char *libprefix));
45	char *GBS_read_dir P_((const char dir, const char *filter));
46	GB_ERROR GBS_free_names P_((char **names));
47	long GBS_gcgchecksum P_((const char *seq));
48	long GB_checksum P_((const char seq, long length, int uppercase, const char exclude));
49	long GBS_checksum P_((const char seq, int uppercase, const char exclude));
50	long GB_merge_sort_strcmp P_((void v0, void v1, char *not_used));
51	char GBS_extract_words P_((const char source, const char *chars, float minlen, GB_BOOL sort_output));
52	int GBS_do_core P_((void));
53	void GB_install_error_handler P_((gb_error_handler_type aw_message));
54	void GB_internal_error P_((const char *templat, ...));
55	void GB_warning P_((const char *templat, ...));
56	void GB_install_warning P_((gb_warning_func_type warn));
57	int GB_status P_((double val));
58	void GB_install_status P_((gb_status_func_type func));
59	int GB_status2 P_((const char *val));
60	void GB_install_status2 P_((gb_status_func2_type func2));
61	GB_CPNTR GBS_regsearch P_((const char in, const char regexprin));
62	char GBS_regreplace P_((const char in, const char regexprin, GBDATA gb_species));
63	GB_CPNTR GBS_regsearch P_((const char in, const char regexprin));
64	char GBS_regreplace P_((const char in, const char regexprin, GBDATA gb_species));
65	char GBS_merge_tagged_strings P_((const char s1, const char tag1, const char replace1, const char s2, const char tag2, const char *replace2));
66	char GBS_string_eval_tagged_string P_((GBDATA gb_main, const char s, const char dt, const char tag, const char srt, const char aci, GBDATA gbd));
67	char GB_read_as_tagged_string P_((GBDATA gbd, const char *tagi));
68	GBDATA_SET *GB_create_set P_((int size));
69	void GB_add_set P_((GBDATA_SET set, GBDATA item));
70	void GB_delete_set P_((GBDATA_SET *set));
71	GB_ERROR GBS_fwrite_string P_((const char strngi, FILE out));
72	char GBS_fread_string P_((FILE in, int optimize));
73	char GBS_replace_tabs_by_spaces P_((const char text));
74
75	/* arbdb.c */
76	char GB_rel P_((void struct_adress, long rel_adress));
77	double GB_atof P_((const char *str));
78	GB_CPNTR GB_give_buffer P_((long size));
79	int GB_give_buffer_size P_((void));
80	GB_CPNTR GB_give_buffer2 P_((long size));
81	GB_CPNTR GB_give_other_buffer P_((const char *buffer, long size));
82	GB_ERROR GB_close P_((GBDATA *gbd));
83	GB_ERROR GB_exit P_((GBDATA *gbd));
84	long GB_read_int P_((GBDATA *gbd));
85	int GB_read_byte P_((GBDATA *gbd));
86	double GB_read_float P_((GBDATA *gbd));
87	long GB_read_count P_((GBDATA *gbd));
88	long GB_read_memuse P_((GBDATA *gbd));
89	GB_CPNTR GB_read_pntr P_((GBDATA *gbd));
90	GB_CPNTR GB_read_char_pntr P_((GBDATA *gbd));
91	char GB_read_string P_((GBDATA gbd));
92	long GB_read_string_count P_((GBDATA *gbd));
93	GB_CPNTR GB_read_link_pntr P_((GBDATA *gbd));
94	char GB_read_link P_((GBDATA gbd));
95	long GB_read_link_count P_((GBDATA *gbd));
96	long GB_read_bits_count P_((GBDATA *gbd));
97	GB_CPNTR GB_read_bits_pntr P_((GBDATA *gbd, char c_0, char c_1));
98	char GB_read_bits P_((GBDATA gbd, char c_0, char c_1));
99	GB_CPNTR GB_read_bytes_pntr P_((GBDATA *gbd));
100	long GB_read_bytes_count P_((GBDATA *gbd));
101	char GB_read_bytes P_((GBDATA gbd));
102	GB_CUINT4 GB_read_ints_pntr P_((GBDATA gbd));
103	long GB_read_ints_count P_((GBDATA *gbd));
104	GB_UINT4 GB_read_ints P_((GBDATA gbd));
105	GB_CFLOAT GB_read_floats_pntr P_((GBDATA gbd));
106	long GB_read_floats_count P_((GBDATA *gbd));
107	float GB_read_floats P_((GBDATA gbd));
108	char GB_read_as_string P_((GBDATA gbd));
109	GB_ERROR GB_write_byte P_((GBDATA *gbd, int i));
110	GB_ERROR GB_write_int P_((GBDATA *gbd, long i));
111	GB_ERROR GB_write_float P_((GBDATA *gbd, double f));
112	GB_ERROR GB_write_pntr P_((GBDATA gbd, const char s, long bytes_size, long stored_size));
113	GB_ERROR GB_write_string P_((GBDATA gbd, const char s));
114	GB_ERROR GB_write_link P_((GBDATA gbd, const char s));
115	GB_ERROR GB_write_bits P_((GBDATA gbd, const char bits, long size, char c_0));
116	GB_ERROR GB_write_bytes P_((GBDATA gbd, const char s, long size));
117	GB_ERROR GB_write_ints P_((GBDATA gbd, const GB_UINT4 i, long size));
118	GB_ERROR GB_write_floats P_((GBDATA gbd, const float f, long size));
119	GB_ERROR GB_write_as_string P_((GBDATA gbd, const char val));
120	int GB_read_security_write P_((GBDATA *gbd));
121	int GB_read_security_read P_((GBDATA *gbd));
122	int GB_read_security_delete P_((GBDATA *gbd));
123	int GB_get_my_security P_((GBDATA *gbd));
124	GB_ERROR GB_write_security_write P_((GBDATA *gbd, unsigned long level));
125	GB_ERROR GB_write_security_read P_((GBDATA *gbd, unsigned long level));
126	GB_ERROR GB_write_security_delete P_((GBDATA *gbd, unsigned long level));
127	GB_ERROR GB_write_security_levels P_((GBDATA *gbd, unsigned long readlevel, unsigned long writelevel, unsigned long deletelevel));
128	GB_ERROR GB_change_my_security P_((GBDATA gbd, int level, const char passwd));
129	GB_ERROR GB_push_my_security P_((GBDATA *gbd));
130	GB_ERROR GB_pop_my_security P_((GBDATA *gbd));
131	GB_TYPES GB_read_type P_((GBDATA *gbd));
132	char GB_read_key P_((GBDATA gbd));
133	GB_CSTR GB_read_key_pntr P_((GBDATA *gbd));
134	GBQUARK GB_key_2_quark P_((GBDATA gbd, const char s));
135	long GB_read_clock P_((GBDATA *gbd));
136	long GB_read_transaction P_((GBDATA *gbd));
137	GBDATA GB_get_father P_((GBDATA gbd));
138	GBDATA GB_get_root P_((GBDATA gbd));
139	GB_BOOL GB_check_father P_((GBDATA gbd, GBDATA gb_maybefather));
140	GBDATA GB_create P_((GBDATA father, const char *key, GB_TYPES type));
141	GBDATA GB_create_container P_((GBDATA father, const char *key));
142	GB_ERROR GB_delete P_((GBDATA *source));
143	GB_ERROR GB_copy P_((GBDATA dest, GBDATA source));
144	char GB_get_subfields P_((GBDATA gbd));
145	GB_ERROR GB_set_compression P_((GBDATA *gb_main, GB_COMPRESSION_MASK disable_compression));
146	GB_ERROR GB_set_temporary P_((GBDATA *gbd));
147	GB_ERROR GB_clear_temporary P_((GBDATA *gbd));
148	long GB_read_temporary P_((GBDATA *gbd));
149	GB_ERROR GB_push_local_transaction P_((GBDATA *gbd));
150	GB_ERROR GB_pop_local_transaction P_((GBDATA *gbd));
151	GB_ERROR GB_push_transaction P_((GBDATA *gbd));
152	GB_ERROR GB_pop_transaction P_((GBDATA *gbd));
153	GB_ERROR GB_begin_transaction P_((GBDATA *gbd));
154	GB_ERROR GB_no_transaction P_((GBDATA *gbd));
155	GB_ERROR GB_abort_transaction P_((GBDATA *gbd));
156	GB_ERROR GB_commit_transaction P_((GBDATA *gbd));
157	GB_ERROR GB_update_server P_((GBDATA *gbd));
158	void *GB_read_old_value P_((void));
159	long GB_read_old_size P_((void));
160	GB_ERROR GB_add_callback P_((GBDATA gbd, enum gb_call_back_type type, GB_CB func, int clientdata));
161	GB_ERROR GB_remove_callback P_((GBDATA gbd, enum gb_call_back_type type, GB_CB func, int clientdata));
162	GB_ERROR GB_ensure_callback P_((GBDATA gbd, enum gb_call_back_type type, GB_CB func, int clientdata));
163	GB_ERROR GB_release P_((GBDATA *gbd));
164	int GB_testlocal P_((GBDATA *gbd));
165	int GB_nsons P_((GBDATA *gbd));
166	GB_ERROR GB_disable_quicksave P_((GBDATA gbd, const char reason));
167	GB_ERROR GB_resort_data_base P_((GBDATA gb_main, GBDATA *new_order_list, long listsize));
168	GB_ERROR GB_resort_system_folder_to_top P_((GBDATA *gb_main));
169	GB_ERROR GB_write_usr_public P_((GBDATA *gbd, long flags));
170	long GB_read_usr_public P_((GBDATA *gbd));
171	long GB_read_usr_private P_((GBDATA *gbd));
172	GB_ERROR GB_write_usr_private P_((GBDATA *gbd, long ref));
173	GB_ERROR GB_write_flag P_((GBDATA *gbd, long flag));
174	int GB_read_flag P_((GBDATA *gbd));
175	GB_ERROR GB_touch P_((GBDATA *gbd));
176	GB_ERROR GB_print_debug_information P_((void dummy, GBDATA gb_main));
177	int GB_info P_((GBDATA *gbd));
178	long GB_number_of_subentries P_((GBDATA *gbd));
179	long GB_rescan_number_of_subentries P_((GBDATA *gbd));
180
181	/* ad_core.c */
182
183	/* admath.c */
184	double GB_log_fak P_((int n));
185
186	/* adoptimize.c */
187	GB_ERROR GB_optimize P_((GBDATA *gb_main));
188
189	/* adsystem.c */
190
191	/* adindex.c */
192	GB_ERROR GB_create_index P_((GBDATA gbd, const char key, long estimated_size));
193	GB_ERROR GB_request_undo_type P_((GBDATA *gb_main, GB_UNDO_TYPE type));
194	GB_UNDO_TYPE GB_get_requested_undo_type P_((GBDATA *gb_main));
195	GB_ERROR GB_undo P_((GBDATA *gb_main, GB_UNDO_TYPE type));
196	char GB_undo_info P_((GBDATA gb_main, GB_UNDO_TYPE type));
197	GB_ERROR GB_set_undo_mem P_((GBDATA *gbd, long memsize));
198
199	/* adperl.c */
200	GB_UNDO_TYPE GBP_undo_type P_((char *type));
201	int GBP_search_mode P_((char *search_mode));
202	const char *GBP_type_to_string P_((GB_TYPES type));
203	GB_TYPES GBP_gb_types P_((char *type_name));
204	GB_UNDO_TYPE GBP_undo_types P_((const char *type_name));
205	const char *GBP_undo_type_2_string P_((GB_UNDO_TYPE type));
206
207	/* adlink.c */
208	GBDATA GB_follow_link P_((GBDATA gb_link));
209	GB_ERROR GB_install_link_follower P_((GBDATA gb_main, const char link_type, GB_Link_Follower link_follower));
210
211	/* adsocket.c */
212	void GB_usleep P_((long usec));
213	void GB_usleep P_((long usec));
214	void GB_usleep P_((long usec));
215	GB_ULONG GB_time_of_file P_((const char *path));
216	long GB_size_of_file P_((const char *path));
217	long GB_mode_of_file P_((const char *path));
218	long GB_mode_of_link P_((const char *path));
219	int GB_is_regularfile P_((const char *path));
220	long GB_getuid P_((void));
221	long GB_getpid P_((void));
222	long GB_getuid_of_file P_((char *path));
223	int GB_unlink P_((const char *path));
224	char GB_follow_unix_link P_((const char path));
225	GB_ERROR GB_symlink P_((const char name1, const char name2));
226	GB_ERROR GB_set_mode_of_file P_((const char *path, long mode));
227	GB_ERROR GB_rename P_((const char oldpath, const char newpath));
228	char GB_read_file P_((const char path));
229	char GB_map_FILE P_((FILE in, int writeable));
230	char GB_map_file P_((const char path, int writeable));
231	long GB_size_of_FILE P_((FILE *in));
232	GB_ULONG GB_time_of_day P_((void));
233	long GB_last_saved_clock P_((GBDATA *gb_main));
234	GB_ULONG GB_last_saved_time P_((GBDATA *gb_main));
235	void GB_edit P_((const char *path));
236	void GB_textprint P_((const char *path));
237	GB_CSTR GB_getcwd P_((void));
238	void GB_xterm P_((void));
239	void GB_xcmd P_((const char *cmd, GB_BOOL background));
240	GB_CSTR GB_getenvUSER P_((void));
241	GB_CSTR GB_getenvHOME P_((void));
242	GB_CSTR GB_getenvARBHOME P_((void));
243	GB_CSTR GB_getenvARBMACROHOME P_((void));
244	GB_CSTR GB_getenvGS P_((void));
245	GB_CSTR GB_getenv P_((const char *env));
246	int GB_host_is_local P_((const char *hostname));
247	GB_ULONG GB_get_physical_memory P_((void));
248
249	/* adcomm.c */
250	GB_ERROR GBCMS_open P_((const char path, long timeout, GBDATA gb_main));
251	GB_ERROR GBCMS_shutdown P_((GBDATA *gbd));
252	GB_BOOL GBCMS_accept_calls P_((GBDATA *gbd, GB_BOOL wait_extra_time));
253	long GB_read_clients P_((GBDATA *gbd));
254	GBDATA GBCMC_find P_((GBDATA gbd, const char key, const char str, enum gb_search_types gbs));
255	int GBCMC_system P_((GBDATA gbd, const char ss));
256	GB_ERROR GB_tell_server_dont_wait P_((GBDATA *gbd));
257	GB_CSTR GBC_get_hostname P_((void));
258	GB_ERROR GB_install_pid P_((int mode));
259
260	/* adhash.c */
261	GB_HASH *GBS_create_hash P_((long size, int upper_case));
262	char GBS_hashtab_2_string P_((GB_HASH hash));
263	char GBS_string_2_hashtab P_((GB_HASH hash, char *data));
264	long GBS_read_hash P_((GB_HASH hs, const char key));
265	long GBS_write_hash P_((GB_HASH hs, const char key, long val));
266	long GBS_write_hash_no_strdup P_((GB_HASH hs, char key, long val));
267	long GBS_incr_hash P_((GB_HASH hs, const char key));
268	void GBS_free_hash_entries P_((GB_HASH *hs));
269	void GBS_free_hash P_((GB_HASH *hs));
270	void GBS_free_hash_entries_free_pointer P_((GB_HASH *hs));
271	void GBS_free_hash_free_pointer P_((GB_HASH *hs));
272	void GBS_hash_do_loop P_((GB_HASH *hs, gb_hash_loop_type func));
273	void GBS_hash_next_element P_((GB_HASH hs, const char key, long val));
274	void GBS_hash_first_element P_((GB_HASH hs, const char key, long val));
275	void GBS_hash_do_sorted_loop P_((GB_HASH *hs, gb_hash_loop_type func, gbs_hash_sort_func_type sorter));
276	long GBS_create_hashi P_((long size));
277	long GBS_read_hashi P_((long hashi, long key));
278	long GBS_write_hashi P_((long hashi, long key, long val));
279	long GBS_free_hashi P_((long hash));
280	char GB_set_cache_size P_((GBDATA gbd, long size));
281
282	/* adquery.c */
283	GBDATA GB_find_sub_by_quark P_((GBDATA father, int key_quark, const char val, GBDATA after));
284	GBDATA GB_find_sub_sub_by_quark P_((GBDATA father, const char key, int sub_key_quark, const char val, GBDATA *after));
285	GBDATA GB_find P_((GBDATA gbd, const char key, const char str, long gbs));
286	char GB_first_non_key_char P_((const char str));
287	GBDATA GB_search P_((GBDATA gbd, const char *str, long create));
288	GBDATA GB_search_last_son P_((GBDATA gbd));
289	long GB_number_of_marked_subentries P_((GBDATA *gbd));
290	GBDATA GB_first_marked P_((GBDATA gbd, const char *keystring));
291	GBDATA GB_next_marked P_((GBDATA gbd, const char *keystring));
292	void GB_install_command_table P_((GBDATA gb_main, struct GBL_command_table table));
293	char GB_command_interpreter P_((GBDATA gb_main, const char str, const char commands, GBDATA *gbd));
294
295	/* ad_save_load.c */
296	GB_ERROR GB_save P_((GBDATA gb, char path, const char *savetype));
297	GB_ERROR GB_save_in_home P_((GBDATA gb, const char path, const char *savetype));
298	GB_ERROR GB_save_as P_((GBDATA gb, const char path, const char *savetype));
299	GB_ERROR GB_delete_database P_((GB_CSTR filename));
300	GB_ERROR GB_save_quick_as P_((GBDATA gb_main, char path));
301	GB_ERROR GB_save_quick P_((GBDATA gb, char refpath));
302	GB_ERROR GB_disable_path P_((GBDATA gbd, const char path));
303
304	/* adcompr.c */
305
306	/* admalloc.c */
307	void *GB_calloc P_((unsigned int nelem, unsigned int elsize));
308	char GB_strdup P_((const char p));
309	void GB_recalloc P_((void ptr, unsigned int oelem, unsigned int nelem, unsigned int elsize));
310	void GB_memerr P_((void));
311
312	/* ad_load.c */
313	void GB_set_next_main_idx P_((long idx));
314	GBDATA GB_login P_((const char path, const char opent, const char user));
315	GBDATA GB_open P_((const char path, const char *opent));
316	void GB_set_verbose P_((void));
317
318	/* admap.c */
319
320	/* adTest.c */
321	void GB_dump P_((GBDATA *gbd));
322	char GB_ralfs_test P_((GBDATA gb_main));
323	char GB_ralfs_menupoint P_((GBDATA main_data));
324
325	/* adtune.c */
326
327	#ifdef __cplusplus
328	}
329	#endif
330	#ifndef P_
331	# error P_ is not defined
332	#endif
333
334	#ifdef __cplusplus
335	extern "C" {
336	#endif
337
338	/* adtools.c */
339	char *GBT_get_alignment_names P_((GBDATA gbd));
340	GB_ERROR GBT_check_alignment_name P_((const char *alignment_name));
341	GBDATA GBT_create_alignment P_((GBDATA gbd, const char name, long len, long aligned, long security, const char type));
342	GB_ERROR GBT_check_alignment P_((GBDATA Main, GBDATA preset_alignment));
343	GB_ERROR GBT_rename_alignment P_((GBDATA gbd, const char source, const char *dest, int copy, int dele));
344	GBDATA GBT_find_or_create P_((GBDATA Main, const char *key, long delete_level));
345	GB_ERROR GBT_check_data P_((GBDATA Main, char alignment_name));
346	GB_ERROR GBT_check_lengths P_((GBDATA Main, const char alignment_name));
347	GB_ERROR GBT_insert_character P_((GBDATA Main, char alignment_name, long pos, long count, char *char_delete));
348	GB_ERROR GBT_delete_tree P_((GBT_TREE *tree));
349	GB_ERROR GBT_write_tree P_((GBDATA gb_main, GBDATA gb_tree, char tree_name, GBT_TREE tree));
350	GB_ERROR GBT_write_tree_rem P_((GBDATA gb_main, const char tree_name, const char *remark));
351	GBT_TREE GBT_read_tree_and_size P_((GBDATA gb_main, const char tree_name, long structure_size, int tree_size));
352	GBT_TREE GBT_read_tree P_((GBDATA gb_main, const char *tree_name, long structure_size));
353	GB_ERROR GBT_link_tree P_((GBT_TREE tree, GBDATA gb_main, GB_BOOL show_status));
354	GBT_TREE GBT_load_tree P_((char path, int structuresize));
355	GBDATA GBT_get_tree P_((GBDATA gb_main, const char *tree_name));
356	long GBT_size_of_tree P_((GBDATA gb_main, const char tree_name));
357	char GBT_find_largest_tree P_((GBDATA gb_main));
358	char GBT_find_latest_tree P_((GBDATA gb_main));
359	char GBT_tree_info_string P_((GBDATA gb_main, const char *tree_name));
360	GB_ERROR GBT_check_tree_name P_((const char *tree_name));
361	char *GBT_get_tree_names P_((GBDATA Main));
362	char GBT_get_next_tree_name P_((GBDATA gb_main, const char *tree));
363	GB_ERROR GBT_free_names P_((char **names));
364	GB_CSTR GBT_get_species_names_of_tree P_((GBT_TREE tree));
365	char GBT_existing_tree P_((GBDATA Main, const char *tree));
366	GB_ERROR GBT_export_tree P_((GBDATA gb_main, FILE out, GBT_TREE *tree, GB_BOOL triple_root));
367	GBDATA GBT_create_species P_((GBDATA gb_main, const char *name));
368	GBDATA GBT_create_species_rel_species_data P_((GBDATA gb_species_data, const char *name));
369	GBDATA GBT_create_SAI P_((GBDATA gb_main, const char *name));
370	GBDATA GBT_add_data P_((GBDATA species, const char ali_name, const char key, GB_TYPES type));
371	GB_ERROR GBT_write_sequence P_((GBDATA gb_data, const char ali_name, long ali_len, const char *sequence));
372	GBDATA GBT_gen_accession_number P_((GBDATA gb_species, const char *ali_name));
373	GBDATA GBT_first_marked_species_rel_species_data P_((GBDATA gb_species_data));
374	GBDATA GBT_first_marked_species P_((GBDATA gb_main));
375	GBDATA GBT_next_marked_species P_((GBDATA gb_species));
376	GBDATA GBT_first_species_rel_species_data P_((GBDATA gb_species_data));
377	GBDATA GBT_first_species P_((GBDATA gb_main));
378	GBDATA GBT_next_species P_((GBDATA gb_species));
379	GBDATA GBT_find_species_rel_species_data P_((GBDATA gb_species_data, const char *name));
380	GBDATA GBT_find_species P_((GBDATA gb_main, const char *name));
381	GBDATA GBT_first_marked_extended P_((GBDATA gb_extended_data));
382	GBDATA GBT_next_marked_extended P_((GBDATA gb_extended));
383	GBDATA GBT_first_SAI P_((GBDATA gb_main));
384	GBDATA GBT_next_SAI P_((GBDATA gb_extended));
385	GBDATA GBT_find_SAI P_((GBDATA gb_main, const char *name));
386	GBDATA GBT_first_SAI_rel_exdata P_((GBDATA gb_extended_data));
387	GBDATA GBT_find_SAI_rel_exdata P_((GBDATA gb_extended_data, const char *name));
388	char GBT_create_unique_species_name P_((GBDATA gb_main, const char *default_name));
389	GBDATA GBT_find_configuration P_((GBDATA gb_main, const char *name));
390	GBDATA GBT_create_configuration P_((GBDATA gb_main, const char *name));
391	void GBT_mark_all P_((GBDATA *gb_main, int flag));
392	long GBT_count_marked_species P_((GBDATA *gb_main));
393	long GBT_count_species P_((GBDATA *gb_main));
394	long GBT_recount_species P_((GBDATA *gb_main));
395	GBDATA GBT_read_sequence P_((GBDATA gb_species, const char *use));
396	char GBT_read_name P_((GBDATA gb_species));
397	char GBT_get_default_alignment P_((GBDATA gb_main));
398	GB_ERROR GBT_set_default_alignment P_((GBDATA gb_main, const char alignment_name));
399	char GBT_get_default_helix P_((GBDATA gb_main));
400	char GBT_get_default_helix_nr P_((GBDATA gb_main));
401	char GBT_get_default_ref P_((GBDATA gb_main));
402	GBDATA GBT_get_alignment P_((GBDATA gb_main, const char *use));
403	long GBT_get_alignment_len P_((GBDATA gb_main, const char use));
404	GB_ERROR GBT_set_alignment_len P_((GBDATA gb_main, const char use, long new_len));
405	int GBT_get_alignment_aligned P_((GBDATA gb_main, const char use));
406	char GBT_get_alignment_type_string P_((GBDATA gb_main, const char *use));
407	GB_alignment_type GBT_get_alignment_type P_((GBDATA gb_main, const char use));
408	GB_BOOL GBT_is_alignment_protein P_((GBDATA gb_main, const char alignment_name));
409	GB_ERROR GBT_check_arb_file P_((const char *name));
410	char *GBT_scan_db P_((GBDATA gbd));
411	GB_ERROR GBT_message P_((GBDATA gb_main, const char msg));
412	GB_HASH GBT_generate_species_hash P_((GBDATA gb_main, int ncase));
413	GB_HASH GBT_generate_marked_species_hash P_((GBDATA gb_main));
414	GB_ERROR GBT_begin_rename_session P_((GBDATA *gb_main, int all_flag));
415	GB_ERROR GBT_rename_species P_((const char oldname, const char newname));
416	GB_ERROR GBT_abort_rename_session P_((void));
417	GB_ERROR GBT_commit_rename_session P_((int (*show_status )(double gauge )));
418	GBDATA *GBT_gen_species_array P_((GBDATA gb_main, long *pspeccnt));
419	char GBT_read_string P_((GBDATA gb_main, const char *awar_name));
420	long GBT_read_int P_((GBDATA gb_main, const char awar_name));
421	double GBT_read_float P_((GBDATA gb_main, const char awar_name));
422	GBDATA GBT_search_string P_((GBDATA gb_main, const char awar_name, const char def));
423	GBDATA GBT_search_int P_((GBDATA gb_main, const char *awar_name, int def));
424	GBDATA GBT_search_float P_((GBDATA gb_main, const char *awar_name, double def));
425	char GBT_read_string2 P_((GBDATA gb_main, const char awar_name, const char def));
426	long GBT_read_int2 P_((GBDATA gb_main, const char awar_name, long def));
427	double GBT_read_float2 P_((GBDATA gb_main, const char awar_name, double def));
428	GB_ERROR GBT_write_string P_((GBDATA gb_main, const char awar_name, const char *def));
429	GB_ERROR GBT_write_int P_((GBDATA gb_main, const char awar_name, long def));
430	GB_ERROR GBT_write_float P_((GBDATA gb_main, const char awar_name, double def));
431	GBDATA GB_test_link_follower P_((GBDATA gb_main, GBDATA gb_link, const char link));
432	GBDATA GBT_open P_((const char path, const char opent, const char disabled_path));
433	GB_ERROR GBT_remote_action P_((GBDATA gb_main, const char application, const char *action_name));
434	GB_ERROR GBT_remote_awar P_((GBDATA gb_main, const char application, const char awar_name, const char value));
435
436	/* adseqcompr.c */
437	GB_ERROR GBT_compress_sequence_tree P_((GBDATA gb_main, GB_CTREE tree, const char *ali_name));
438	GB_ERROR GBT_compress_sequence_tree2 P_((GBDATA gb_main, const char tree_name, const char *ali_name));
439	void GBT_compression_test P_((void dummy, GBDATA gb_main));
440
441	/* adtables.c */
442	GB_ERROR GBT_install_table_link_follower P_((GBDATA *gb_main));
443	GBDATA GBT_open_table P_((GBDATA gb_table_root, const char *table_name, GB_BOOL read_only));
444	GBDATA GBT_first_table P_((GBDATA gb_main));
445	GBDATA GBT_next_table P_((GBDATA gb_table));
446	GBDATA GBT_first_table_entry P_((GBDATA gb_table));
447	GBDATA GBT_first_marked_table_entry P_((GBDATA gb_table));
448	GBDATA GBT_next_table_entry P_((GBDATA gb_table_entry));
449	GBDATA GBT_next_marked_table_entry P_((GBDATA gb_table_entry));
450	GBDATA GBT_find_table_entry P_((GBDATA gb_table, const char *id));
451	GBDATA GBT_open_table_entry P_((GBDATA gb_table, const char *id));
452	GBDATA GBT_first_table_field P_((GBDATA gb_table));
453	GBDATA GBT_first_marked_table_field P_((GBDATA gb_table));
454	GBDATA GBT_next_table_field P_((GBDATA gb_table_field));
455	GBDATA GBT_next_marked_table_field P_((GBDATA gb_table_field));
456	GBDATA GBT_find_table_field P_((GBDATA gb_table, const char *id));
457	GB_TYPES GBT_get_type_of_table_entry_field P_((GBDATA gb_table, const char fieldname));
458	GB_ERROR GBT_savely_write_table_entry_field P_((GBDATA gb_table, GBDATA gb_entry, const char fieldname, const char value_in_ascii_format));
459	GBDATA GBT_open_table_field P_((GBDATA gb_table, const char *fieldname, GB_TYPES type_of_field));
460
461	#ifdef __cplusplus
462	}
463	#endif

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