| 1 | #******************* Syntax *********************************** |
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| 2 | # |
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| 3 | # [USER:]SERVER_ID HOST:IP_NR [programm args] |
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| 4 | # [USER:]SERVER_ID :SOCKETPATH [programm args] |
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| 5 | # [xxx] means optional field |
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| 6 | # all $(enviroment_variable) are replaced by the value of the 'enviroment_variable' |
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| 7 | # if host is localhost than it replaces by `hostname` |
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| 8 | # |
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| 9 | # Existing SERVER_IDs: |
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| 10 | # |
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| 11 | # ARB_DB_SERVER Your private database server. It is automatically started |
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| 12 | # ARB_PT_SERVER Default PT_SERVER for PB_RETRIEVE (privat TU_Munich server) |
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| 13 | # ARB_PT_SERVERn Global PT_SERVERs. Needed for fast database search (align seq, probe des.) |
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| 14 | # n starts from 0 to max, no number can be excluded !!! |
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| 15 | # ARB_NAME_SERVER Generates short names for species |
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| 16 | # |
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| 17 | #***************************************************************** |
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| 18 | |
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| 19 | |
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| 20 | #*********** Private Servers (for each user) ****************** |
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| 21 | # |
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| 22 | # This is a local server, running on one machine. Each user has his own socket: |
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| 23 | # ARB_PID is an Enviroment Variable which is set by the command 'arb' to its own process id |
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| 24 | # see programm $ARBHOME/SH/arb_clean to remove the sockets |
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| 25 | |
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| 26 | ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) |
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| 27 | |
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| 28 | # If you want to run programms on a workstation cluster, you have to assign your arbdb server |
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| 29 | # and one ip-id for each user. To choose an ip_id choose any number between 1000 and 4000 and |
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| 30 | # examine /etc/services whether this ip-id has not yet been allocated by another programm |
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| 31 | # smith:ARB_DB_SERVER myhost:4011 // socket for smith ('arb' have to be started on 'myhost') |
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| 32 | # ludwig:ARB_DB_SERVER myhost:4012 // socket for ludwig |
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| 33 | # ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) // and sockets for all others |
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| 34 | |
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| 35 | #*********** Global Servers (for all users) ****************** |
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| 36 | # |
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| 37 | #*********** Nameserver The server should run on the nfs server ****************** |
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| 38 | |
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| 39 | ARB_NAME_SERVER localhost:3029 arb_name_server -d$(ARBHOME)/lib/nas/names.dat |
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| 40 | |
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| 41 | #*********** PT_SERVERS The server should run on the nfs server ****************** |
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| 42 | #******* You may add new pt_servers here: (numbers must be continues) ********* |
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| 43 | |
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| 44 | ARB_PT_SERVER localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/16s_rrna_aligned.arb |
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| 45 | ARB_PT_SERVER0 localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/23s_rrna_aligned.arb |
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| 46 | ARB_PT_SERVER1 localhost:3031 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_rRNA.arb |
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| 47 | ARB_PT_SERVER2 localhost:3032 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_rRNA.arb |
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| 48 | ARB_PT_SERVER3 localhost:3033 arb_pt_server -D$(ARBHOME)/lib/pts/5S_rRNA.arb |
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| 49 | ARB_PT_SERVER4 localhost:3035 arb_pt_server -D$(ARBHOME)/lib/pts/atp.arb |
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| 50 | ARB_PT_SERVER5 localhost:3036 arb_pt_server -D$(ARBHOME)/lib/pts/rrna.arb |
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| 51 | ARB_PT_SERVER6 localhost:3038 arb_pt_server -D$(ARBHOME)/lib/pts/user.arb |
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| 52 | ARB_PT_SERVER7 localhost:3043 arb_pt_server -D$(ARBHOME)/lib/pts/ITS.arb |
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| 53 | ARB_PT_SERVER8 localhost:3037 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_WL.arb |
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| 54 | ARB_PT_SERVER9 localhost:3040 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_WL.arb |
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| 55 | ARB_PT_SERVER10 localhost:3044 arb_pt_server -D$(ARBHOME)/lib/pts/PRB_WL.arb |
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| 56 | ARB_PT_SERVER11 localhost:3039 arb_pt_server -D$(ARBHOME)/lib/pts/develop.arb |
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| 57 | |
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