source: tags/ms_r16q4/HELP_SOURCE/oldhelp/ecoliref.hlp

#Please insert up references in the next lines (line starts with keyword UP)
UP      arb.hlp
UP      glossary.hlp
UP      arb_edit4.hlp
UP      extended.hlp

#Please insert subtopic references  (line starts with keyword SUB)
SUB     e4_get_species.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE           E. coli Reference

OCCURRENCE      ARB_EDIT4/Edit/Reload Ecoli sequence

DESCRIPTION     The SAI entry 'ECOLI' is used by the editor and other
                programs to detect and display the current cursor position
                with respect to the homologous position within the
                E. coli sequence.

                If you have no SAI 'ECOLI' yet this creates one:

                 * Search your ecoli sequence and select it.
                 * Go to species information window and
                   * press SPECIES/COPY to create a copy of the selected species
                     This will create a species with ID 'xxx0' or similar, where 'xxx' is
                     the ID of your selected species.
                   * select the 'name' field and change it to 'ECOLI'
                   * press 'SPECIES/Convert to SAI' 

NOTES           After inserting or deleting gaps in the whole alignment (ARB_NT/
                Sequence/Insert/Delete column) the reference SAI has to be
                reloaded by this function.

                You may as well choose any other sequence as reference sequence.

                See LINK{ed4_nds.hlp} to change the default name 'Ecoli'.

BUGS            No bugs known