source: tags/ms_r16q4/HELP_SOURCE/oldhelp/mg_alignment.hlp

#Please insert up references in the next lines (line starts with keyword UP)
UP      arb.hlp
UP      glossary.hlp
UP      alignment.hlp
UP      arb_merge_workflow.hlp

#Please insert subtopic references  (line starts with keyword SUB)
SUB     ad_align.hlp

#************* Title of helpfile !! and start of real helpfile ********
TITLE           Check and modify the consistency of two alignments

OCCURRENCE      ARB_MERGE/Check alignments

DESCRIPTION     Checks the types of data stored within 'alignments' (see LINK{glossary.hlp})
                for consistency to prevent merging of non homologous
                data such as 16S and 23S rRNA or protein and DNA sequence data.

                Press the 'Check Alignments' button to display the 'MERGE ALIGNMENTS'
                window.

                The 'Check' button checks all alignments.

NOTES           If any alignment exists only in the source database (DB) then the alignment
                will be created in the target DB (but no sequences will be copied).

                If the alignment exists in both databases then the sequence_type
                will be compared.

                If any inconsistencies are detected the user has to resolve them
                by pressing the 'MODIFY' button to display the 'ALIGNMENT
                CONTROL' window. This tool allows to modify the alignments.

EXAMPLES        None

WARNINGS        None

BUGS            No bugs known