Last change
on this file was
10597,
checked in by westram, 11 years ago
|
- only interpret as list if '-' or '*' is followed by exactly one whitespace
- fixed affected helpsources
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
File size:
1.7 KB
|
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1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | |
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5 | #Please insert subtopic references (line starts with keyword SUB) |
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6 | #SUB subtopic.hlp |
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7 | |
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8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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9 | |
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10 | #************* Title of helpfile !! and start of real helpfile ******** |
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11 | TITLE Column statistic |
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12 | |
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13 | OCCURRENCE ARB_NT/SAI/Create SAI from Sequences/Positional Variability ... |
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14 | |
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15 | DESCRIPTION Calculates the base and frequencies positional variability for |
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16 | each column independently. |
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17 | It uses the parsimony method to find the minimum number of |
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18 | mutations for each site. |
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19 | |
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20 | The result can be used by: |
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21 | |
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22 | - Parsimony to weight the characters properly |
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23 | - Neighbour joining to estimate the distances more accurately. |
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24 | - Filter |
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25 | |
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26 | Result: |
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27 | |
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28 | '.' Less than 10% valid characters |
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29 | |
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30 | '0123456789ABCDE...' The higher the number the more conserved the site is. |
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31 | Stepping 2 position rightwards in the list of given char, |
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32 | means half number of mutations (eg .'7' means "half number |
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33 | of mutations compared to '5'") |
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34 | |
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35 | NOTES Use the biggest tree you have. |
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36 | |
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37 | NOTE @@@ Compare it to consensus and max frequency. |
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38 | |
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39 | WARNINGS if you have only small trees (<100 species), forget this |
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40 | function. |
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41 | |
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42 | BUGS No bugs known |
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