| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
|---|
| 2 | UP arb.hlp |
|---|
| 3 | UP glossary.hlp |
|---|
| 4 | |
|---|
| 5 | #Please insert subtopic references (line starts with keyword SUB) |
|---|
| 6 | #SUB subtopic.hlp |
|---|
| 7 | |
|---|
| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
|---|
| 9 | |
|---|
| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
|---|
| 11 | TITLE Selected Species and Cursor Position |
|---|
| 12 | |
|---|
| 13 | OCCURRENCE ARB_NT |
|---|
| 14 | ARB_EDIT4 |
|---|
| 15 | ARB_PARSIMONY |
|---|
| 16 | |
|---|
| 17 | DESCRIPTION An individual species (not an SAI!) can be "selected". |
|---|
| 18 | That means: |
|---|
| 19 | |
|---|
| 20 | * the database entries of the selected species get displayed in the LINK{sp_info.hlp} window, |
|---|
| 21 | * the name of the selected species will be displayed on the species info button |
|---|
| 22 | in the upper right area of the ARB_NT main window, |
|---|
| 23 | * the tree display of ARB_NT draws a box as indicator next to the selected species, |
|---|
| 24 | * ARB_EDIT4 will jump to the selected species (see LINK{e4_get_species.hlp} for details), |
|---|
| 25 | - this allows you e.g. to align the selected species (see LINK{faligner.hlp}) |
|---|
| 26 | * ARB_SECEDIT will display the selected species (see LINK{arb_secedit.hlp}) |
|---|
| 27 | * ARB_PARS can insert the selected species into an existing tree (see LINK{pa_quick.hlp}) |
|---|
| 28 | * it can be used for filter generation (see LINK{sel_fil.hlp}) |
|---|
| 29 | * LINK{input_mask.hlp} will normally display information from the selected species |
|---|
| 30 | |
|---|
| 31 | There are several ways to select a species: |
|---|
| 32 | |
|---|
| 33 | * in ARB_NT / ARB_PARSIMONY: |
|---|
| 34 | * click on a species in the tree display (while in LINK{mode_select.hlp}) |
|---|
| 35 | * search for species and select a species from the result list (see LINK{sp_search.hlp}) |
|---|
| 36 | * select a LINK{probematch.hlp} |
|---|
| 37 | |
|---|
| 38 | * in ARB_EDIT4: |
|---|
| 39 | * place the cursor into a species by clicking into the displayed sequence data |
|---|
| 40 | |
|---|
| 41 | * in ARB_DIST: |
|---|
| 42 | * click on a species name in matrix display |
|---|
| 43 | * select a detected cluster (see LINK{di_clusters.hlp}) while 'Select representative' is checked |
|---|
| 44 | |
|---|
| 45 | Selecting a species in ARB_EDIT4 by clicking into the sequence data, will also select a |
|---|
| 46 | global cursor position. This cursor position is displayed in the ARB_EDIT4 |
|---|
| 47 | top area (see LINK{e4.hlp}) and will be used |
|---|
| 48 | |
|---|
| 49 | * as insert/delete position by LINK{insdel.hlp} amd |
|---|
| 50 | * as start of ORF by LINK{translate_dna_2_pro.hlp}. |
|---|
| 51 | |
|---|
| 52 | |
|---|
