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Last change on this file was 16564, checked in by westram, 7 years ago
reintegrates 'io' into 'trunk' implements #691 adds: log:branches/io@16436:16510,16513:16514,16517,16533:16535,16537:16563
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 78.1 KB

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1	# =============================================================== #
2	# #
3	# File : Makefile #
4	# #
5	# Institute of Microbiology (Technical University Munich) #
6	# http://www.arb-home.de/ #
7	# #
8	# =============================================================== #
9
10	# -----------------------------------------------------
11	# The ARB Makefile is aware of the following defines:
12	#
13	# CC C compiler (should be defined by OS)
14	# CXX C++ compiler (should be defined by OS)
15	#
16	# BUILDHOST_64=0/1 1=>compile on 64 bit platform (defaults to ARB_64)
17	# DEVELOPER=name special compilation (values: ANY,RELEASE,your name)
18	# OPENGL=0/1 whether OPENGL is available
19	#
20	# -----------------------------------------------------
21	# Paths for several libraries may be set from config.makefile by using:
22	#
23	# export XLIBS=$(shell pkg-config --libs xpm xerces-c)
24	# export XINCLUDES=$(shell pkg-config --cflags x11)
25	# export XAW_LIBS=$(shell pkg-config --libs xaw7)
26	# export XML_INCLUDES=$(shell pkg-config --cflags xerces-c)
27	#
28	# You make have to explicitely point pkg-config to the *.pc files needed.
29	# For example, Xquartz X11 libraries on macos can be located by adding
30	# the following line before those given above:
31	#
32	# export PKG_CONFIG_PATH=/usr/X11/lib/pkgconfig
33	#
34	# -----------------------------------------------------
35	# ARB Makefile and ARB source code are aware of the following defines:
36	#
37	# $(MACH) name of the machine (LINUX or DARWIN; see config.makefile)
38	# DEBUG compiles the DEBUG sections
39	# DEBUG_GRAPHICS all X-graphics are flushed immediately (for debugging)
40	# ARB_64=0/1 1=>compile 64 bit version
41	# UNIT_TESTS=0/1 1=>compile in unit tests and call them after build
42	# COVERAGE=0/1/2 compile in gcov support (useful together with UNIT_TESTS=1)
43	# 0=no, 1+2=compile in, 1=show
44	# STABS=0/1 force stabs format? (0 = "use default format")
45	# SANITIZE=0/#/all use Sanitizer? (defaults to 0,
46	# 1=AddressSanitizer+LeakSanitizer,
47	# 2=UndefinedBehaviorSanitizer,
48	# combine bit-values to activate multiple Sanitizers,
49	# specify 'all' to activate all)
50	# SHOWTODO=0/1 activate TODO-warnings? (defaults to 0, except for ralf)
51	#
52	# -----------------------------------------------------
53	# The ARB source code is aware of the following defines:
54	#
55	# NDEBUG doesn't compile the DEBUG sections
56	# DEVEL_$(DEVELOPER) developer-dependent flag (enables you to have private sections in code)
57	# DEVELOPER='ANY' (default setting) will be ignored
58	# configurable in config.makefile
59	#
60	# -----------------------------------------------------
61	# Read configuration
62	include config.makefile
63
64	# set defaults for variables commented out in config.makefile:
65	ifndef DARWIN
66	DARWIN:=0
67	endif
68	ifndef LINUX
69	LINUX:=0
70	endif
71	ifndef DEBIAN
72	DEBIAN:=0
73	endif
74	ifndef REDHAT
75	REDHAT:=0
76	endif
77	ifndef ARB_64
78	ARB_64=1#default to 64bit
79	endif
80
81	# compiler settings:
82	ifneq ($(CC),use__A_CC__instead_of__CC)
83	A_CC:=$(CC)# compile C
84	A_CXX:=$(CXX)# compile C++
85
86	# uncomment to ensure no submakefile uses CC and CXX directly
87	override CC:=use__A_CC__instead_of__CC
88	override CXX:=use__A_CXX__instead_of__CXX
89	endif
90
91	export CC CXX A_CC A_CXX
92
93	# unconditionally prepend $(ARBHOME)/lib to LD_LIBRARY_PATH if not found
94	ifeq ($(findstring $(ARBHOME)/lib,$(LD_LIBRARY_PATH)),)
95	LD_LIBRARY_PATH:=${ARBHOME}/lib:$(LD_LIBRARY_PATH)
96	endif
97
98	# store LD_LIBRARY_PATH to circumvent SIP restrictions:
99	ARBBUILD_LIBRARY_PATH:=$(LD_LIBRARY_PATH)
100
101	FORCEMASK = umask 002
102	NODIR=--no-print-directory
103
104	SED:=$(ARBHOME)/SH/arb_sed
105	READLINK:=$(ARBHOME)/SH/arb_readlink
106
107	# ---------------------- compiler version detection
108
109	# supported gcc versions:
110	ALLOWED_gcc_VERSIONS=\
111	4.3.1 4.3.2 4.3.3 4.3.4 \
112	4.4.1 4.4.3 4.4.5 4.4.6 4.4.7 \
113	4.5.2 \
114	4.6.1 4.6.2 4.6.3 4.6.4 \
115	4.7.1 4.7.2 4.7.3 4.7.4 \
116	4.8.0 4.8.1 4.8.2 4.8.3 4.8.4 4.8.5 \
117	4.9.0 4.9.1 4.9.2 4.9.3 4.9.4 \
118	5.1.0 5.2.0 5.3.0 5.3.1 5.4.0 5.5.0 \
119	6.1.0 6.2.0 6.3.0 6.4.0 \
120	7.1.0 7.2.0 \
121
122
123	# ----------------------
124
125	COMPILER_INFO:=$(shell SOURCE_TOOLS/arb_compiler_version.pl $(A_CXX))
126	COMPILER_NAME:=$(word 1,$(COMPILER_INFO))
127	COMPILER_VERSION:=$(word 2,$(COMPILER_INFO))
128
129	USE_CLANG:=0
130	ifneq ($(COMPILER_NAME),gcc)
131	ifeq ($(COMPILER_NAME),clang)
132	USE_CLANG:=1
133	else
134	$(error failed to detect COMPILER_NAME (got '$(COMPILER_NAME)', expected 'clang' or 'gcc'))
135	endif
136	endif
137
138	ifeq ($(USE_CLANG),1)
139	# accept all clang versions:
140	ALLOWED_COMPILER_VERSIONS=$(COMPILER_VERSION)
141	else
142	ALLOWED_COMPILER_VERSIONS=$(ALLOWED_gcc_VERSIONS)
143	endif
144
145	COMPILER_VERSION_ALLOWED=$(strip $(subst ___,,$(foreach version,$(ALLOWED_COMPILER_VERSIONS),$(findstring ___$(version)___,___$(COMPILER_VERSION)___))))
146
147	#---------------------- split gcc version
148
149	SPLITTED_VERSION:=$(subst ., ,$(COMPILER_VERSION))
150
151	USE_GCC_MAJOR:=$(word 1,$(SPLITTED_VERSION))
152	USE_GCC_MINOR:=$(word 2,$(SPLITTED_VERSION))
153	USE_GCC_PATCHLEVEL:=$(word 3,$(SPLITTED_VERSION))
154
155	USE_GCC_452_OR_HIGHER:=
156	USE_GCC_46_OR_HIGHER:=
157	USE_GCC_47_OR_HIGHER:=
158	USE_GCC_48_OR_HIGHER:=
159	USE_GCC_49_OR_HIGHER:=
160	USE_GCC_50_OR_HIGHER:=
161	USE_GCC_60_OR_HIGHER:=
162	USE_GCC_70_OR_HIGHER:=
163
164	ifeq ($(USE_CLANG),0)
165	ifeq ($(USE_GCC_MAJOR),4)
166	ifeq ($(USE_GCC_MINOR),5)
167	ifneq ('$(findstring $(USE_GCC_PATCHLEVEL),23456789)','')
168	USE_GCC_452_OR_HIGHER:=yes
169	endif
170	else
171	ifneq ('$(findstring $(USE_GCC_MINOR),6789)','')
172	USE_GCC_452_OR_HIGHER:=yes
173	USE_GCC_46_OR_HIGHER:=yes
174	ifneq ($(USE_GCC_MINOR),6)
175	USE_GCC_47_OR_HIGHER:=yes
176	ifneq ($(USE_GCC_MINOR),7)
177	USE_GCC_48_OR_HIGHER:=yes
178	ifneq ($(USE_GCC_MINOR),8)
179	USE_GCC_49_OR_HIGHER:=yes
180	endif
181	endif
182	endif
183	endif
184	endif
185	else
186	# gcc 5.x or higher
187	USE_GCC_452_OR_HIGHER:=yes
188	USE_GCC_46_OR_HIGHER:=yes
189	USE_GCC_47_OR_HIGHER:=yes
190	USE_GCC_48_OR_HIGHER:=yes
191	USE_GCC_49_OR_HIGHER:=yes
192	USE_GCC_50_OR_HIGHER:=yes
193	ifneq ($(USE_GCC_MAJOR),5)
194	# gcc 6.x or higher
195	USE_GCC_60_OR_HIGHER:=yes
196	ifneq ($(USE_GCC_MAJOR),6)
197	# gcc 7.x or higher
198	USE_GCC_70_OR_HIGHER:=yes
199	endif
200	endif
201	endif
202	endif
203
204	#---------------------- define special directories for non standard builds
205
206	ifeq ($(DARWIN),1)
207	OSX_FW:=/System/Library/Frameworks
208	OSX_FW_OPENGL:=$(OSX_FW)/OpenGL.framework/Versions/A/Libraries
209	OSX_FW_GLUT:=$(OSX_FW)/GLUT.framework/Versions/A/Libraries
210	OSX_FW_IMAGEIO:=$(OSX_FW)/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources
211	endif
212
213	#----------------------
214
215	ifeq ($(DARWIN),1)
216	LINK_STATIC=1# link static
217	else
218	LINK_STATIC=0# link dynamically
219	# LINK_STATIC=1# link static (testing only)
220	endif
221
222	shared_cflags :=# flags for shared lib compilation
223	clflags :=# linker flags (when passed through gcc)
224	extended_warnings :=# warning flags for C and C++-compiler
225	extended_cpp_warnings :=# warning flags for C++-compiler only
226
227	DISABLE_VECTORIZE_CHECK:=0
228
229	ifeq ($(DEBUG),0)
230	dflags := -DNDEBUG# defines
231	ifeq ($(USE_CLANG),1)
232	cflags := -O3# compiler flags (C and C++)
233	else
234	clflags += -Wl,-O2# passthrough linker flags
235	# ------- standard optimization:
236	cflags := -O3# compiler flags (C and C++)
237	# ------- test changed optimization (DISABLE_VECTORIZE_CHECK for -O2 or lower):
238	# cflags := -O2# do not commit uncommented!
239	# DISABLE_VECTORIZE_CHECK:=1
240	endif
241	endif
242
243	ifeq ($(DEBIAN),1)
244	clflags += -Wl,-rpath=/usr/lib/arb/lib -Wl,-z,relro
245	endif
246
247	ifeq ($(DEBUG),1)
248	dflags := -DDEBUG
249
250	gdb_common := -g -g3 -ggdb -ggdb3
251
252	DBGOPTI:=-O0
253	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
254	DBGOPTI:=-Og
255	endif
256
257	ifeq ($(STABS),1)
258	cflags := $(DBGOPTI) $(gdb_common) -gstabs+ # using stabs+ (enable this for bigger debug session: debugs inlines, quick var inspect, BUT valgrind stops working :/)
259	else
260	cflags := $(DBGOPTI) $(gdb_common) # (using dwarf - cant debug inlines here, incredible slow on showing variable content)
261	endif
262
263	# cflags := $(DBGOPTI) $(gdb_common) -gdwarf-3 # (specify explicit dwarf format)
264	# cflags := $(DBGOPTI) $(gdb_common) -gstabs # using stabs (same here IIRC)
265	# cflags := -O2 $(gdb_common) # use this for callgrind (force inlining)
266
267	ifeq ($(DARWIN),0)
268	clflags += -Wl,-g
269	# Note:
270	# Previously '-Wl,-noinhibit-exec' was added to 'clflags' here,
271	# to fix some issues with launchpad binutils (see [12972]).
272	# But that change also caused 'undefined symbols' NOT to be reported as errors
273	# at link time, producing executables that fail at runtime :/
274	endif
275
276	ifeq ($(DEBUG_GRAPHICS),1)
277	dflags += -DDEBUG_GRAPHICS
278	endif
279
280	endif # DEBUG only
281
282	# control how much you get spammed
283	# (please do not change default in SVN, use developer specific setting as below)
284	POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl
285	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --original# dont modify compiler output
286	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --loop-optimization-candi# show candidates for vectorization check
287	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --dump-loop-optimization# useful while optimizing code for vectorization
288	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --hide-Noncopyable-advices
289	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --show-useless-Weff++
290	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --no-warnings
291	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --only-first-error
292	# POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --no-warnings --only-first-error
293	ifeq ($(DEVELOPER),ELMAR)
294	POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl --only-first-error
295	endif
296
297	# Enable extra warnings
298	extended_warnings :=
299	extended_cpp_warnings :=
300
301	# C and C++
302	extended_warnings += -Wwrite-strings -Wunused -Wno-aggregate-return -Wshadow
303
304	# C++ only
305	extended_cpp_warnings += -Wnon-virtual-dtor -Wreorder -Wpointer-arith -Wdisabled-optimization -Wmissing-format-attribute
306	extended_cpp_warnings += -Wctor-dtor-privacy# < gcc 3
307	# extended_cpp_warnings += -Wfloat-equal# gcc 3.0
308
309	# ------- above only warnings available in 3.0
310
311	WEFFC_BROKEN:=0
312	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
313	ifneq ('$(USE_GCC_48_OR_HIGHER)','yes')
314	# -Weffc++ broken in 4.7.x series
315	# gcc 4.7.3 crashes on GenomeImport.cxx when -Weffc++ is active
316	# (bug reported https://gcc.gnu.org/bugzilla/show_bug.cgi?id=56923; apparently wont be fixed for 4.7-series)
317	# gcc 4.7.4 crashes on DBwriter.cxx when -Weffc++ is active
318	WEFFC_BROKEN:=1
319	endif
320	endif
321	ifeq ('$(WEFFC_BROKEN)','0')
322	extended_cpp_warnings += -Weffc++# gcc 3.0.1
323	endif
324
325	extended_cpp_warnings += -Wmissing-noreturn# gcc 3.0.2
326	# extended_cpp_warnings += -Wold-style-cast# gcc 3.0.4 (warn about 28405 old-style casts)
327	extended_cpp_warnings += -Winit-self# gcc 3.4.0
328	extended_cpp_warnings += -Wstrict-aliasing# gcc 3.4
329	extended_cpp_warnings += -Wextra# gcc 3.4.0
330
331	ifeq ($(DEBUG),1)
332	ifeq ($(USE_CLANG),0)
333	# turn off -Wmaybe-uninitialized in debug mode (gets activated with -Wextra). too many bogus warnings
334	extended_cpp_warnings += -Wno-maybe-uninitialized
335	endif
336	endif
337	ifeq ('$(USE_GCC_452_OR_HIGHER)','yes')
338	extended_cpp_warnings += -Wlogical-op# gcc 4.5.2
339	endif
340	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
341	# extended_cpp_warnings += -Wunused-local-typedefs# gcc 4.7 (fails for each STATIC_ASSERT, enable only for Cxx11)
342	# extended_cpp_warnings += -Wzero-as-null-pointer-constant# gcc 4.7 #@@@ activate
343	endif
344	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
345	extended_cpp_warnings += -Wunused-local-typedefs# available since gcc 4.7 (but fails for each STATIC_ASSERT, so enable only for Cxx11)
346	endif
347	ifeq ('$(USE_GCC_50_OR_HIGHER)','yes')
348	extended_cpp_warnings += -Wswitch-bool
349	extended_cpp_warnings += -Wlogical-not-parentheses
350	extended_cpp_warnings += -Wsizeof-array-argument
351	extended_cpp_warnings += -Wbool-compare
352
353	ifneq ($(DEVELOPER),RELEASE)
354	# suggest final:
355	extended_cpp_warnings += -Wsuggest-final-types
356	extended_cpp_warnings += -Wsuggest-final-methods
357	dflags += -DSUGGESTS_FINAL
358	endif
359	endif
360	ifeq ('$(USE_GCC_60_OR_HIGHER)','yes')
361	# extended_cpp_warnings += -Wshift-negative-value # done by -Wextra
362	extended_cpp_warnings += -Wduplicated-cond
363	endif
364
365	#---------------------- turn off clang bogus warnings
366
367	ifeq ($(USE_CLANG),1)
368	# -Wmismatched-tags warns about struct/class mismatch in forward declarations (which is explicitely allowed)
369	# -Wchar-subscripts reports too many bogus warnings for "array['x']" (when 'x' is known to be in range [0..128])
370	# -Wunused-private-field report too many false positives (currently ~ 2 of 3)
371	# -Wstring-plus-int warns about common ARB coding practice
372	# -Wgnu-static-float-init warns about accepted GNU extension
373	extended_cpp_warnings += -Wno-mismatched-tags -Wno-char-subscripts -Wno-unused-private-field -Wno-string-plus-int
374	ifeq ('$(COMPILER_VERSION)','4.2.1')
375	# jenkins build (doesn't know switch -Wno-gnu-static-float-init)
376	extended_cpp_warnings += -Wno-gnu
377	else
378	extended_cpp_warnings += -Wno-gnu-static-float-init
379	endif
380	endif
381
382	#---------------------- developer
383
384	ifneq ($(DEVELOPER),ANY) # ANY=default setting (skip all developer specific code)
385	dflags += -DDEVEL_$(DEVELOPER)# activate developer/release specific code
386	endif
387
388	#---------------------- activate TODO warnings?
389
390	ifndef SHOWTODO
391	ifeq ($(DEVELOPER),RALF)
392	SHOWTODO:=1
393	else
394	SHOWTODO:=0
395	endif
396	endif
397	ifeq ($(SHOWTODO),1)
398	dflags += -DWARN_TODO# activate "TODO" warnings
399	endif
400
401	#---------------------- activate Sanitizers?
402
403	ASAN_OPTIONS:=handle_segv=0:color=0
404	ASAN_OPTIONS+=:detect_leaks=1 # comment-out to disable leak-detection
405	ASAN_OPTIONS+=:check_initialization_order=1
406	# ASAN_OPTIONS+=:abort_on_error=1
407
408	# suppressions: SOURCE_TOOLS/arb.leaksan.supp
409	LSAN_OPTIONS:=max_leaks=3:suppressions=$(ARBHOME)/SOURCE_TOOLS/arb.leaksan.supp
410
411
412	ifndef SANITIZE
413	SANITIZE:=0
414	endif
415
416	SANITIZE_ADDRESS:=0
417	SANITIZE_UNDEFINED:=0
418
419	ifneq ($(SANITIZE),0)
420	ifeq ($(SANITIZE),all)
421	SANITIZE:=3
422	endif
423
424	ifeq ($(SANITIZE),1)
425	SANITIZE_ADDRESS:=1
426	else
427	ifeq ($(SANITIZE),2)
428	SANITIZE_UNDEFINED:=1
429	else
430	ifeq ($(SANITIZE),3)
431	SANITIZE_ADDRESS:=1
432	SANITIZE_UNDEFINED:=1
433	else
434	$(error Unknown value '$(SANITIZE)' specified for SANITIZE in config.makefile)
435	endif
436	endif
437	endif
438	endif
439
440	ifeq ($(SANITIZE_ADDRESS),1)
441	ifneq ('$(USE_GCC_48_OR_HIGHER)','yes')
442	$(info AddressSanitizer not usable with gcc $(COMPILER_VERSION) - disabled)
443	SANITIZE_ADDRESS:=0
444	else
445	ifneq ('$(USE_GCC_49_OR_HIGHER)','yes')
446	$(warning note that LeakSanitizer does not work with gcc $(COMPILER_VERSION))
447	endif
448	endif
449	endif
450
451	ifeq ($(SANITIZE_UNDEFINED),1)
452	ifneq ('$(USE_GCC_49_OR_HIGHER)','yes')
453	$(info UndefinedBehaviorSanitizer not usable with gcc $(COMPILER_VERSION) - disabled)
454	SANITIZE_UNDEFINED:=0
455	endif
456	endif
457
458	SANITIZE_ANY:=0
459	ifeq ($(SANITIZE_ADDRESS),1)
460	SANITIZE_ANY:=1
461	endif
462	ifeq ($(SANITIZE_UNDEFINED),1)
463	SANITIZE_ANY:=1
464	endif
465
466	ifeq ($(SANITIZE_ANY),1)
467	DISABLE_VECTORIZE_CHECK:=1
468	endif
469
470	#---------------------- 32 or 64 bit
471
472	ifndef BUILDHOST_64
473	BUILDHOST_64:=$(ARB_64)# assume build host is same as version (see config.makefile)
474	endif
475
476	cross_cflags:=
477	cross_lflags:=
478	cross_clflags:=
479
480	ifeq ($(ARB_64),1)
481	dflags += -DARB_64 #-fPIC
482	shared_cflags += -fPIC
483
484	ifeq ($(BUILDHOST_64),1)
485	# build 64-bit ARB version on 64-bit host
486	CROSS_LIB:=# empty = autodetect below
487	ifeq ($(DARWIN),1)
488	cross_cflags += -arch x86_64
489	cross_lflags += -arch x86_64
490	cross_clflags += -arch x86_64
491	endif
492	else
493	# build 64-bit ARB version on 32-bit host
494	CROSS_LIB:=/lib64
495	cross_cflags += -m64
496	cross_lflags += -m64 -m elf_x86_64
497	cross_clflags += -m64 -Wl,-m64,-m,elf_x86_64
498	endif
499	else
500	ifeq ($(BUILDHOST_64),1)
501	# build 32-bit ARB version on 64-bit host
502	CROSS_LIB:=# empty = autodetect below
503	cross_cflags += -m32
504	cross_lflags += -m32 -m elf_i386
505	cross_clflags += -m32 -Wl,-m32,-m,elf_i386
506	else
507	# build 32-bit ARB version on 32-bit host
508	CROSS_LIB:=/lib
509	endif
510	endif
511
512	cflags += $(cross_cflags)
513	clflags += $(cross_clflags)
514
515	ifeq ('$(CROSS_LIB)','')
516	# autodetect libdir
517	ifeq ($(ARB_64),1)
518	CROSS_LIB:=$(shell (test -d /lib64 && echo lib64) \|\| echo lib)
519	else
520	CROSS_LIB:=$(shell (test -d /lib32 && echo lib32) \|\| echo lib)
521	endif
522	endif
523
524	#---------------------- unit tests
525
526	ifndef UNIT_TESTS
527	UNIT_TESTS=0#default is "no tests"
528	endif
529	ifeq ($(UNIT_TESTS),1)
530	dflags += -DUNIT_TESTS
531	UNIT_TESTER_LIB=UNIT_TESTER/UNIT_TESTER.a
532	else
533	UNIT_TESTER_LIB=
534	endif
535
536	#---------------------- use gcov
537
538	ifndef COVERAGE
539	COVERAGE=0#default is "no"
540	endif
541	ifneq ($(COVERAGE),0)
542	GCOV_FLAGS=--coverage
543	else
544	GCOV_FLAGS=
545	endif
546
547	cflags += $(GCOV_FLAGS)
548	clflags += $(GCOV_FLAGS)
549	cross_lflags += $(GCOV_FLAGS)
550
551	#---------------------- other flags
552
553	dflags += -D$(MACH) # define machine
554
555	ifeq ($(DARWIN),1)
556	shared_cflags += -fno-common
557	else
558	dflags += $(shell getconf LFS_CFLAGS)
559	endif
560
561	cflags += -pipe
562	cflags += -fmessage-length=0# don't wrap compiler output
563	cflags += -fshow-column# show columns
564	cflags += -funit-at-a-time
565	cflags += -fPIC
566	cflags += -fno-common# link all global data into one namespace
567	cflags += -fstrict-aliasing# gcc 3.4
568	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
569	cflags += -fno-diagnostics-show-caret#gcc 4.8 (4.7.?)
570	endif
571	#cflags += -save-temps# uncomment to see preprocessor output
572
573	#---------------------- various sanitizers
574	# There are some disabled tests in CORE/arb_misc.cxx@sanitizers
575	# which trigger sanitizer reports.
576
577	ifeq ($(SANITIZE_ANY),1)
578	cflags += -ggdb3 -fno-omit-frame-pointer
579	endif
580
581	# activate AddressSanitizer+LeakSanitizer?
582	ifeq ($(SANITIZE_ADDRESS),1)
583	cflags += -fsanitize=address
584	clflags += -fsanitize=address
585	dflags += -DLEAKS_SANITIZED
586	endif
587
588	# activate UndefinedBehaviorSanitizer?
589	ifeq ($(SANITIZE_UNDEFINED),1)
590	cflags += -fsanitize=undefined
591	clflags += -fsanitize=undefined
592	dflags += -DUNDEF_SANITIZED
593	ifeq ('$(USE_GCC_50_OR_HIGHER)','yes')
594	# abort on runtime errors
595	cflags += -fno-sanitize-recover=all
596	endif
597	#
598	# Note: alignment-sanitizer is deactivated for ARBDB and PROBE!
599	ifeq ('$(DEBUG)','1')
600	ifeq ($(USE_GCC_MAJOR),4)
601	ifeq ($(USE_GCC_MINOR),9)
602	ifneq ('$(findstring $(USE_GCC_PATCHLEVEL),01)','')
603	# workaround https://gcc.gnu.org/bugzilla/show_bug.cgi?id=63531 for 4.9.0 + 4.9.1
604	# (problem is fixed in 4.9.2 release)
605	extended_cpp_warnings:=$(subst -Weffc++,,$(extended_cpp_warnings))
606	endif
607	endif
608	endif
609	endif
610	endif
611
612	#---------------------- X11 location
613
614	ifeq ($(DARWIN),1)
615	XHOME:=$(PREFIX)
616	else
617	ifeq ($(DEBIAN),1)
618	XHOME:=$(PREFIX)
619	else
620	XHOME:=/usr/X11R6
621	endif
622	endif
623
624	XINCLUDES ?= -I$(XHOME)/include
625	XLIBS ?= -L$(XHOME)/$(CROSS_LIB)
626	ifeq ($(DARWIN),1)
627	XINCLUDES += -I$(OSX_FW)/GLUT.framework/Headers -I$(OSX_FW)/OpenGL.framework/Headers -I$(OSX_SDK)/usr/include/krb5
628
629	XLIBS += -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
630	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGL.dylib:$(OSX_FW_OPENGL)/libGL.dylib
631	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGLU.dylib:$(OSX_FW_OPENGL)/libGLU.dylib
632	else
633	XLIBS += -lXm -lXpm -lXt -lXext -lX11
634	endif
635
636	dflags += -DARB_MOTIF
637
638	#---------------------- open GL
639
640	ifeq ($(OPENGL),1)
641	cflags += -DARB_OPENGL # activate OPENGL code
642	GL := gl # this is the name of the OPENGL base target
643	GL_LIB_SYS := -lGL -lGLU
644	GL_LIB_ARB := -L$(ARBHOME)/GL/glAW -lglAW
645
646	ifeq ($(DARWIN),1)
647	GL_LIB_SYS += -lpthread
648	endif
649
650	GL_PNGLIBS_ARB := -L$(ARBHOME)/GL/glpng -lglpng_arb
651	GL_PNGLIBS_SYS := -lpng
652
653	GLEWLIB := -lGLEW -lGLw
654	ifeq ($(DARWIN),1)
655	GLUTLIB := -glut
656	else
657	GLUTLIB := -lglut
658	endif
659
660	GL_LIBS_SYS := $(GL_LIB_SYS) $(GL_PNGLIBS_SYS) $(GLEWLIB) $(GLUTLIB)
661	GL_LIBS_ARB := $(GL_LIB_ARB) $(GL_PNGLIBS_ARB)
662
663	RNA3D_LIB := RNA3D/RNA3D.a
664	else
665	GL_LIBS_ARB:=# no opengl -> no libs
666	GL_LIBS_SYS:=# no opengl -> no libs
667	GL:=# don't build ARB openGL libs
668
669	RNA3D_LIB :=
670	endif
671
672	RNA3D_LIB_4_DEPENDS := RNA3D/RNA3D.a
673
674	GL_LIBS:=$(GL_LIBS_ARB) $(GL_LIBS_SYS)
675
676	#---------------------- tiff lib:
677
678	TIFFLIBS := -ltiff
679
680	#---------------------- XML lib:
681
682	XMLLIBS := -lxerces-c
683
684	#---------------------- glib:
685
686	ARB_NEEDED_GLIB=glib-2.0
687
688	ARB_GLIB_INCLUDE:=$(strip $(shell pkg-config --cflags $(ARB_NEEDED_GLIB)))
689	ARB_GLIB_LIBS:=$(strip $(shell pkg-config --libs $(ARB_NEEDED_GLIB)))
690
691	#---------------------- basic libs:
692
693	SYSLIBS:=
694	ifeq ($(DARWIN),1)
695	SYSLIBS += -lstdc++
696	else
697	SYSLIBS += -lm $(ARB_GLIB_LIBS)
698	endif
699
700	#---------------------- include symbols?
701
702	ifeq ($(TRACESYM),1)
703	ifeq ($(USE_CLANG),0)
704	cflags += -rdynamic
705	clflags += -rdynamic -Wl,--export-dynamic
706	endif
707	endif
708
709	#---------------------- system dependent commands
710
711	ifeq ($(DARWIN),1)
712	TIME:=gtime
713	else
714	TIME:=/usr/bin/time
715	endif
716
717	#---------------------- SSE vectorizer
718
719	ifeq ('$(USE_GCC_60_OR_HIGHER)','yes')
720	ifeq ('$(USE_GCC_MAJOR)','6')
721	ifneq ('$(findstring $(USE_GCC_MINOR),123)','')
722	# gcc 6.1.x .. 6.3.x
723	# see http://bugs.arb-home.de/ticket/700
724	cflags += -fno-tree-loop-vectorize
725	DISABLE_VECTORIZE_CHECK:=1
726	else
727	ifeq ($(DEBUG),0)
728	$(error vectorizing incompatible? check ticket 700 with this compiler version)
729	endif
730	endif
731	else
732	ifeq ($(DEBUG),0)
733	$(error vectorizing incompatible? check ticket 700 with this compiler version)
734	endif
735	endif
736	endif
737
738	ifeq ($(DEBUG),0)
739	ifeq ($(USE_GCC_49_OR_HIGHER),yes)
740	ifeq ($(DISABLE_VECTORIZE_CHECK),0)
741	# cflags += -fopt-info
742	cflags += -fopt-info-vec
743	# Shows reasons for unsuccessful vectorization:
744	# cflags += -fopt-info-vec-missed
745	POST_COMPILE += --check-loop-optimization
746	endif
747	else
748	ifeq ($(USE_GCC_48_OR_HIGHER),yes)
749	# no automatic vectorization-check for gcc<4.9.0
750	# -> uncomment the next 2 lines and grep the spam it will produce for 'vectorized.*loops'
751	# cflags += -fopt-info -fopt-info-vec-missed
752	# POST_COMPILE += --original
753	endif
754	endif
755	endif
756
757	#---------------------- stop early on broken flags/compiler combination
758
759	ifeq ($(DEBUG),0)
760	ifeq ($(SANITIZE_ANY),1)
761	ifeq ('$(COMPILER_VERSION)','4.9.1')
762	$(error compiling DEBUG=0 + SANITIZE!=0 crashes with gcc $(COMPILER_VERSION) (gcc 4.9.2 works))
763	endif
764	endif
765	endif
766
767	ifeq ('$(USE_GCC_70_OR_HIGHER)', 'yes')
768	$(error compiling with gcc $(COMPILER_VERSION) is considered unstable atm. see http://bugs.arb-home.de/ticket/752 for details)
769	endif
770
771	#---------------------- differences between linking executables and shared libs:
772
773	# executables:
774	ifeq ($(DARWIN),1)
775	blflags:=$(clflags)
776	else
777	blflags:=$(clflags) -Wl,--no-undefined
778	endif
779
780	# shared libraries
781	llflags:=$(clflags)
782
783	# dont use clflags below
784	clflags:=
785
786	# -------------------------------------------------------------------------
787	# Don't put any machine/version/etc conditionals below!
788	# (instead define variables above)
789	# -------------------------------------------------------------------------
790
791	cflags += -W -Wall $(dflags) $(extended_warnings)
792	cxxflags := $(extended_cpp_warnings)
793
794	# add CFLAGS + CPPFLAGS from environment for DEBIAN build
795	ifeq ($(DEBIAN),1)
796	cflags := $(CFLAGS) $(cflags)
797	cxxflags += $(CPPFLAGS)
798	endif
799
800	ifeq ('$(USE_CLANG)','1')
801	# none of the following standards works with clang3.3 (under linux) => dont use standard (as done before r15516)
802	# cxxflags += -std=gnu++11
803	# cxxflags += -std=gnu++0x
804	else
805	ifeq ('$(USE_GCC_60_OR_HIGHER)','yes')
806	cxxflags += -std=gnu++14# see also TEMPLATES/cxxforward.h@USE_Cxx14
807	else
808	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
809	cxxflags += -std=gnu++11# see also TEMPLATES/cxxforward.h@USE_Cxx11
810	else
811	# gcc versions between 4.3 (lowest supported) and <4.7
812	cxxflags += -std=gnu++0x
813	endif
814	endif
815	endif
816
817	LINK_STATIC_LIB := ar -csq# link static lib
818	LINK_EXECUTABLE := $(A_CXX) $(blflags) -o# link executable (c++)
819
820	ifeq ($(LINK_STATIC),1)
821	SHARED_LIB_SUFFIX = a# static lib suffix
822	LINK_SHARED_LIB := $(LINK_STATIC_LIB)
823	else
824	SHARED_LIB_SUFFIX = so# shared lib suffix
825	LINK_SHARED_LIB := $(A_CXX) $(llflags) -shared -o# link shared lib
826	endif
827
828	ifeq ($(DARWIN),1)
829	lflags4perl:=
830	else
831	lflags4perl:=$(cross_lflags) -shared
832	endif
833
834	# delete variables unused below
835	blflags:=
836	llflags:=
837
838	# other used tools
839	MAKEDEPEND_PLAIN = makedepend
840	MAKEDEPEND = $(FORCEMASK);$(MAKEDEPEND_PLAIN)
841
842	#SEP:=--------------------------------------------------------------------------------
843	SEP=[`date +%M:%S.%N`] ------------------------------------------------
844	# to analyse timings run
845	# make -j9 clean; make -j9 all \| grep '^\[' \| sort
846	# make -j9 "TIMED_TARGET=perl" clean_timed_target \| grep '^\[' \| sort
847
848	# ------------------------------------------------------------ DYNLIBDEFS
849	# various dynamic library definitions for linking executables:
850	#
851	# SYSLIBS: system libraries needed by database lib
852	# ARBDB_LIB: database lib
853	# DBSYS_LIBS: executable using database (but no GUI)
854	# GUI_LIBS: executable using database and GUI (arb gui uses database)
855	#
856	# Note: definitions exported to sub-makefiles are described in SOURCE_TOOLS/parent_make.txt
857
858	CORE_LIB=-lCORE
859	ARBDB_LIB=-lARBDB $(CORE_LIB)
860	DBSYS_LIBS = $(ARBDB_LIB) $(SYSLIBS)
861
862	GUI_LIBS_PREFIX:=
863	ifeq ($(DARWIN),1)
864	# this seem to be added at wrong place, since opengl is only needed to link EDIT4
865	GUI_LIBS_PREFIX:=-framework GLUT -framework OpenGL
866	endif
867
868	GUI_LIBS=$(GUI_LIBS_PREFIX) $(DBSYS_LIBS) -lAWT -lWINDOW $(XLIBS)
869
870	LIBPATH = -L$(ARBHOME)/lib
871
872	DEST_LIB = lib
873	DEST_BIN = bin
874
875	CC_INCLUDES := -I. -I$(ARBHOME)/INCLUDE $(XINCLUDES) $(ARB_GLIB_INCLUDE)
876	CXX_INCLUDES := $(CC_INCLUDES)
877	MAKEDEPENDFLAGS := -- -DARB_OPENGL -DUNIT_TESTS -D__cplusplus -I. -Y$(ARBHOME)/INCLUDE
878
879	# -------------------------------
880	# old PTSERVER or PTPAN?
881
882	ifeq ($(PTPAN),1)
883	# PTPAN only libs
884	ARCHS_PT_SERVER = \
885	ptpan/PROBE.a
886	else
887	ifeq ($(PTPAN),2)
888	# special mode to compile both servers (developers only!)
889	ARCHS_PT_SERVER = \
890	ptpan/PROBE.a \
891	PROBE/PROBE.a
892	ARCHS_PT_SERVER_LINK = PROBE/PROBE.a# default to old ptserver
893	else
894	# PT-server only libs
895	ARCHS_PT_SERVER = \
896	PROBE/PROBE.a
897	endif
898	endif
899
900	ifndef ARCHS_PT_SERVER_LINK
901	ARCHS_PT_SERVER_LINK = $(ARCHS_PT_SERVER)
902	endif
903
904	# ---------------------------------------
905	# wrap main()
906
907	use_ARB_main=$(ARBHOME)/SOURCE_TOOLS/arb_main_cpp.o
908	use_ARB_main_C=$(ARBHOME)/SOURCE_TOOLS/arb_main_c.o
909
910	# -----------------------------------------
911	# export variables to submakefiles
912
913	include SOURCE_TOOLS/export2sub
914
915	# do not define (exported) variables below this point
916
917	# -------------------------
918	# Main arb targets:
919	# -------------------------
920
921	first_target:
922	$(MAKE) checks
923	@echo $(SEP)
924	@echo 'Main targets:'
925	@echo ''
926	@echo ' all - Compile ARB + TOOLs + and copy shared libs + link foreign software'
927	@echo ' (That is most likely the target you want)'
928	@echo ''
929	@echo ' clean - remove generated files ("SUBDIR/SUBDIR.clean" to clean only SUBDIR)'
930	@echo ' rebuild - clean + all'
931	@echo ' cleanlinked - remove all binaries'
932	@echo ' relink - cleanlinked + all (=relink all from objects)'
933	@echo ''
934	@echo 'Some often used sub targets (make all makes them all):'
935	@echo ''
936	@echo ' arb - Just compile ARB (but none of the integrated tools)'
937	@echo ' menus - create lib/gde/arb.menu from GDEHELP/ARB_GDEmenus.source'
938	@echo ' perl - Compile the PERL XSUBS into lib/ARB.so and create links in lib to perl'
939	@echo ' binlink - Create all links in the bin directory'
940	@echo ''
941	@echo 'Development targets:'
942	@echo ''
943	@echo ' depends - create or update dependencies ("SUBDIR/SUBDIR.depends" to update only SUBDIR)'
944	@echo ' proto - create or update prototypes ("SUBDIR/SUBDIR.proto" to update only SUBDIR)'
945	@echo ' tags - create tags for xemacs'
946	@echo ' show - show available shortcuts (AKA subtargets)'
947	@echo ' up - shortcut for depends+proto+tags'
948	ifeq ($(UNIT_TESTS),1)
949	@echo ' ut - only run tests'
950	@echo ' "UNIT=..." oneunit - build one unit and run tests (see also UNIT_TESTER/Makefile.setup.local)'
951	endif
952	ifneq ($(SANITIZE),0)
953	@echo ' sanitize - all + run arb_ntree with sanitizer (test.arb + execute _logged)'
954	endif
955	@echo ' modified - rebuild files modified in svn checkout (does touch)'
956	@echo ' touch - touch files modified in svn checkout'
957	@echo ''
958	@echo 'Internal maintenance:'
959	@echo ''
960	@echo ' relinfo - show help on release targets'
961	@echo ' tarfile - make rebuild and create arb version tarfile ("tarfile_quick" to skip rebuild)'
962	@echo ' save - save all basic ARB sources into arbsrc_DATE ("savetest" to check filelist)'
963	@echo ' patch - save svn diff to patchfile'
964	@echo ' source_doc - create doxygen documentation'
965	@echo ' relocated - rebuild partly (use when you have relocated ARBHOME)'
966	@echo ' check_res - check resource usage'
967	@echo ' dep_graph - Build dependency graphs'
968	@echo ' clean_cov - Clean coverage results'
969	@echo ''
970	@echo ' clean_opengl_changed - clean after changing OPENGL setting in config.Makefile'
971	@echo ''
972	@echo ' post_commit_check - Checks whether'
973	@echo ' * main make targets work,'
974	@echo ' * dependencies and prototypes are up to date,'
975	@echo ' * SVN-controlled files remain unaffected by called targets and'
976	@echo ' * all generated files are ignored.'
977	@echo ' (has to be called in a clean SVN checkout)'
978	@echo $(SEP)
979	@echo ''
980
981	relinfo:
982	@echo ''
983	@echo $(SEP)
984	@echo 'Release targets:'
985	@echo ''
986	@echo ' inc_candi - increase RC candidate-number (only possible in "rc" branch, not needed for RC1)'
987	@echo ' inc_patch - increase release patchlevel (only possible in "stable" branch)'
988	@echo ' inc_minor - increase minor version number (only possible in "trunk")'
989	@echo ' inc_major - increase MAJOR version number (only possible in "trunk")'
990	@echo ''
991	@echo ' show_version - show version tag'
992	@echo ''
993	@echo $(SEP)
994	@echo ''
995
996	# auto-generate config.makefile:
997
998	CONFIG_MAKEFILE_FOUND=$(wildcard config.makefile)
999
1000	config.makefile : config.makefile.template
1001	@echo --------------------------------------------------------------------------------
1002	ifeq ($(strip $(CONFIG_MAKEFILE_FOUND)),)
1003	@cp $< $@
1004	@echo '$(ARBHOME)/$@:1: has been generated.'
1005	@echo 'Please edit $@ to configure your system!'
1006	@echo --------------------------------------------------------------------------------
1007	@false
1008	else
1009	@echo '$(ARBHOME)/$<:1: is more recent than'
1010	@echo '$(ARBHOME)/$@:1:'
1011	@ls -al config.makefile*
1012	@echo --------------------------------------------------------------------------------
1013	@echo "Updating $@ (if this fails, check manually)"
1014	SOURCE_TOOLS/update_config_makefile.pl
1015	@echo "Sucessfully updated $@"
1016	@echo --------------------------------------------------------------------------------
1017	@ls -al config.makefile*
1018	@echo --------------------------------------------------------------------------------
1019	@echo "Diff to your old config.makefile:"
1020	@echo --------------------------------------------------------------------------------
1021	-diff $@.bak $@
1022	@echo --------------------------------------------------------------------------------
1023	endif
1024
1025	# check if everything is configured correctly
1026
1027	check_DEVELOPER:
1028	ifndef DEVELOPER
1029	@echo 'config.makefile:1: DEVELOPER not defined'
1030	@false
1031	endif
1032
1033	check_DEBUG:
1034	ifndef dflags
1035	@echo 'config.makefile:1: DEBUG has to be defined. Valid values are 0 and 1'
1036	@false
1037	endif
1038
1039	check_ARB_64:
1040	ifndef ARB_64
1041	@echo 'config.makefile:1: ARB_64 has to be defined. Valid values are 0 and 1'
1042	@false
1043	endif
1044
1045	# ---------------------------------------- check gcc version
1046
1047	COMPILER_BROKEN:=0
1048
1049	# gcc 4.8.0 produces invalid code (see #617)
1050	ifeq ('$(COMPILER_VERSION_ALLOWED)', '4.8.0')
1051	COMPILER_BROKEN:=1
1052	endif
1053
1054	check_same_GCC_VERSION:
1055	$(ARBHOME)/SOURCE_TOOLS/check_same_compiler_version.pl $(COMPILER_NAME) $(COMPILER_VERSION_ALLOWED)
1056
1057	check_GCC_VERSION:
1058	@echo 'Compiler version check:'
1059	# see .@ALLOWED_gcc_VERSIONS
1060	ifeq ('$(COMPILER_VERSION_ALLOWED)', '')
1061	@echo " - Your compiler is '$(COMPILER_NAME)' version '$(COMPILER_VERSION)'"
1062	@echo ' This version is not in the list of supported $(COMPILER_NAME)-versions:'
1063	@$(foreach version,$(ALLOWED_COMPILER_VERSIONS),echo ' * $(version)';)
1064	@echo ' - You may either ..'
1065	@echo ' - add your version to ALLOWED_$(COMPILER_NAME)_VERSIONS in the Makefile and try it out or'
1066	@echo ' - switch to one of the allowed versions (see arb_README_gcc.txt for installing'
1067	@echo ' a different version of gcc)'
1068	$(error Unsupported compiler '$(COMPILER_NAME)' version '$(COMPILER_VERSION)')
1069	else
1070	ifeq ($(COMPILER_BROKEN),1)
1071	$(error $(COMPILER_NAME) version '$(COMPILER_VERSION_ALLOWED)' would build a broken ARB version. Compilation refused)
1072	else
1073	@echo " - Supported $(COMPILER_NAME) version '$(COMPILER_VERSION_ALLOWED)' detected - fine!"
1074	@echo ''
1075	ifeq ($(USE_CLANG),1)
1076	@echo "Dump clang version:"
1077	$(A_CXX) -v
1078	endif
1079	$(MAKE) check_same_GCC_VERSION
1080	endif
1081	endif
1082
1083	#---------------------- check ARBHOME
1084
1085	# use arb_INSTALL.txt to determine whether ARBHOME points to correct directory
1086	ARB_INSTALL_FOUND=$(wildcard $(ARBHOME)/arb_INSTALL.txt)
1087
1088	check_ARBHOME:
1089	ifeq ($(strip $(ARB_INSTALL_FOUND)),)
1090	@echo ------------------------------------------------------------
1091	@echo "ARBHOME is set to '$(ARBHOME)'"
1092	@echo "The environment variable ARBHOME has to point to the top arb source directory."
1093	@echo "If you use bash enter:"
1094	@echo " export ARBHOME='`pwd`'"
1095	@echo ------------------------------------------------------------
1096	@false
1097	endif
1098
1099	ARB_PATH_SET=$(findstring $(ARBHOME)/bin,$(PATH))
1100
1101	check_PATH: check_ARBHOME
1102	ifeq ($(strip $(ARB_PATH_SET)),)
1103	@echo ------------------------------------------------------------
1104	@echo "The environment variable PATH has to contain $(ARBHOME)/bin"
1105	@echo "If you use bash enter:"
1106	@echo ' export PATH=$$ARBHOME/bin:$$PATH'
1107	@echo ------------------------------------------------------------
1108	@false
1109	endif
1110
1111	check_TOOLS:
1112	@util/arb_check_build_env.pl \
1113	"$(A_CC)" \
1114	"$(A_CXX)" \
1115	"$(MAKEDEPEND_PLAIN)" \
1116	"$(LINK_SHARED_LIB)" \
1117	"$(LINK_SHARED_LIB)" \
1118
1119	check_ENVIRONMENT : check_PATH check_TOOLS
1120	@echo "-------------------- Environment [start]"
1121	@echo "ARBHOME='$(ARBHOME)'"
1122	@echo "PATH='$(PATH)'"
1123	@echo "LD_LIBRARY_PATH='$(LD_LIBRARY_PATH)'"
1124	@echo "-------------------- Environment [end]"
1125
1126	check_tabs: check_setup
1127	ifeq ($(DEBUG),1)
1128	@SOURCE_TOOLS/tabBrake.pl
1129	endif
1130
1131	force_tab_check:
1132	@touch -t 198001010000 SOURCE_TOOLS/stamp.tabBrake
1133	@$(MAKE) check_tabs
1134
1135
1136	# ---------------------
1137
1138	check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
1139	@echo Your setup seems to be ok.
1140
1141	checks: check_setup check_tabs
1142	@rm -f SOURCE_TOOLS/postcompile.sav
1143
1144
1145	# end test section ------------------------------
1146
1147	# ---------------------------------------
1148	# List of standard top level directories
1149	#
1150	# sub-makefiles have to define the targets
1151	# - 'depends' and
1152	# - 'clean'
1153	#
1154	# when adding new libs here, also add a dependency vs 'links' or 'links_non_perl' in .@DD_links_non_perl
1155
1156	ARCHS = \
1157	$(ARCHS_PT_SERVER) \
1158	AISC/AISC.a \
1159	AISC_MKPTPS/AISC_MKPTPS.a \
1160	ARBDB/libARBDB.a \
1161	CORE/libCORE.a \
1162	ARB_GDE/ARB_GDE.a \
1163	AWT/libAWT.a \
1164	AWTC/AWTC.a \
1165	AWTI/AWTI.a \
1166	CONSENSUS_TREE/CONSENSUS_TREE.a \
1167	CONVERTALN/CONVERTALN.a \
1168	DBSERVER/DBSERVER.a \
1169	DIST/DIST.a \
1170	EDIT4/EDIT4.a \
1171	EISPACK/EISPACK.a \
1172	GDE/GDE.a \
1173	GENOM/GENOM.a \
1174	GENOM_IMPORT/GENOM_IMPORT.a \
1175	GL/GL.a \
1176	ISLAND_HOPPING/ISLAND_HOPPING.a \
1177	MERGE/MERGE.a \
1178	MULTI_PROBE/MULTI_PROBE.a \
1179	NALIGNER/NALIGNER.a \
1180	NAMES/NAMES.a \
1181	NAMES_COM/server.a \
1182	NTREE/NTREE.a \
1183	PARSIMONY/PARSIMONY.a \
1184	PERLTOOLS/PERLTOOLS.a \
1185	PHYLO/PHYLO.a \
1186	PRIMER_DESIGN/PRIMER_DESIGN.a \
1187	PROBE_COM/server.a \
1188	PROBE_DESIGN/PROBE_DESIGN.a \
1189	PROBE_SET/PROBE_SET.a \
1190	READSEQ/READSEQ.a \
1191	RNA3D/RNA3D.a \
1192	RNACMA/RNACMA.a \
1193	SECEDIT/SECEDIT.a \
1194	SEQ_QUALITY/SEQ_QUALITY.a \
1195	SERVERCNTRL/SERVERCNTRL.a \
1196	SL/SL.a \
1197	STAT/STAT.a \
1198	TOOLS/TOOLS.a \
1199	TREEGEN/TREEGEN.a \
1200	UNIT_TESTER/UNIT_TESTER.a \
1201	WETC/WETC.a \
1202	WINDOW/libWINDOW.a \
1203	XML/XML.a \
1204
1205	# -----------------------
1206	# library packets
1207
1208	ARCHS_CLIENT_PROBE = PROBE_COM/client.a
1209	ARCHS_CLIENT_NAMES = NAMES_COM/client.a
1210
1211	ARCHS_MAKEBIN = AISC_MKPTPS/AISC_MKPTPS.a AISC/AISC.a
1212
1213	# communication libs need aisc and aisc_mkpts:
1214
1215	AISC/AISC.dummy: proto_tools
1216
1217	comtools: AISC/AISC.dummy
1218
1219	ARCHS_SEQUENCE = \
1220	SL/SEQUENCE/SEQUENCE.a \
1221	SL/ALIVIEW/ALIVIEW.a \
1222	SL/PRONUC/PRONUC.a \
1223
1224	ARCHS_TREE = \
1225	SL/ARB_TREE/ARB_TREE.a \
1226	SL/FILTER/FILTER.a \
1227	$(ARCHS_SEQUENCE) \
1228
1229	# parsimony tree (used by NTREE, PARSIMONY, STAT(->EDIT4), DIST(obsolete!))
1230	ARCHS_AP_TREE = \
1231	SL/AP_TREE/AP_TREE.a \
1232	$(ARCHS_TREE) \
1233
1234	# --------------------------------------------------------------------------------
1235	# dependencies for linking shared libs
1236
1237	link_core: core
1238	link_db: db link_core
1239	link_aw: aw link_db
1240	link_awt: awt link_aw
1241
1242	#***************************************************************************************
1243	# Individual_Programs_Section
1244	#***************************************************************************************
1245
1246	arbmainwrapper:
1247	$(MAKE) -C SOURCE_TOOLS -r mainwrapper
1248
1249
1250	#********************************* arb_ntree ************************************
1251	NTREE = bin/arb_ntree
1252	ARCHS_NTREE = \
1253	NTREE/NTREE.a \
1254	ARB_GDE/ARB_GDE.a \
1255	SL/GROUP_SEARCH/GROUP_SEARCH.a \
1256	SL/DB_UI/DB_UI.a \
1257	AWTC/AWTC.a \
1258	AWTI/AWTI.a \
1259	CONSENSUS_TREE/CONSENSUS_TREE.a \
1260	GENOM_IMPORT/GENOM_IMPORT.a \
1261	GENOM/GENOM.a \
1262	MERGE/MERGE.a \
1263	MULTI_PROBE/MULTI_PROBE.a \
1264	PRIMER_DESIGN/PRIMER_DESIGN.a \
1265	PROBE_DESIGN/PROBE_DESIGN.a \
1266	SEQ_QUALITY/SEQ_QUALITY.a \
1267	SERVERCNTRL/SERVERCNTRL.a \
1268	SL/ALILINK/ALILINK.a \
1269	SL/AW_NAME/AW_NAME.a \
1270	SL/CONSENSUS/CONSENSUS.a \
1271	SL/DB_SCANNER/DB_SCANNER.a \
1272	SL/DB_QUERY/DB_QUERY.a \
1273	SL/QUERY/QUERY.a \
1274	SL/SEQIO/SEQIO.a \
1275	STAT/STAT.a \
1276	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1277	SL/HELIX/HELIX.a \
1278	SL/REGEXPR/REGEXPR.a \
1279	SL/REFENTRIES/REFENTRIES.a \
1280	SL/NDS/NDS.a \
1281	SL/ITEM_SHADER/ITEM_SHADER.a \
1282	SL/ITEMS/ITEMS.a \
1283	SL/INSDEL/INSDEL.a \
1284	SL/LOCATION/LOCATION.a \
1285	SL/MACROS/MACROS.a \
1286	SL/TRANSLATE/TRANSLATE.a \
1287	SL/TREEDISP/TREEDISP.a \
1288	SL/TREE_ADMIN/TREE_ADMIN.a \
1289	SL/TREE_READ/TREE_READ.a \
1290	SL/TREE_WRITE/TREE_WRITE.a \
1291	XML/XML.a \
1292	$(ARCHS_AP_TREE) \
1293
1294	$(NTREE): $(ARCHS_NTREE:.a=.dummy) link_awt
1295	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NTREE) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1296	echo "$(SEP) Link $@"; \
1297	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(XMLLIBS)" ; \
1298	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(XMLLIBS) && \
1299	echo "$(SEP) Link $@ [done]"; \
1300	)
1301
1302	#********************************* arb_edit4 ************************************
1303	EDIT4 = bin/arb_edit4
1304
1305	ARCHS_EDIT4 := \
1306	EDIT4/EDIT4.a \
1307	ARB_GDE/ARB_GDE.a \
1308	SL/FAST_ALIGNER/FAST_ALIGNER.a \
1309	AWTC/AWTC.a \
1310	ISLAND_HOPPING/ISLAND_HOPPING.a \
1311	SECEDIT/SECEDIT.a \
1312	SERVERCNTRL/SERVERCNTRL.a \
1313	SL/AW_HELIX/AW_HELIX.a \
1314	SL/AW_NAME/AW_NAME.a \
1315	SL/CONSENSUS/CONSENSUS.a \
1316	SL/ITEMS/ITEMS.a \
1317	STAT/STAT.a \
1318	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1319	SL/HELIX/HELIX.a \
1320	SL/TRANSLATE/TRANSLATE.a \
1321	SL/MACROS/MACROS.a \
1322	SL/NDS/NDS.a \
1323	$(ARCHS_AP_TREE) \
1324	XML/XML.a \
1325
1326	ifeq ($(OPENGL),1)
1327	ARCHS_EDIT4 += RNA3D/RNA3D.a
1328	endif
1329
1330	LIBS_EDIT4 := $(GL_LIBS)
1331
1332	$(EDIT4): $(ARCHS_EDIT4:.a=.dummy) link_awt
1333	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_EDIT4) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1334	echo "$(SEP) Link $@"; \
1335	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4)" ; \
1336	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4) && \
1337	echo "$(SEP) Link $@ [done]"; \
1338	)
1339
1340	#********************************* arb_rnacma ************************************
1341	RNACMA = bin/arb_rnacma
1342	ARCHS_RNACMA = \
1343	RNACMA/RNACMA.a \
1344
1345	$(RNACMA) : $(ARCHS_RNACMA:.a=.dummy) link_db
1346	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_RNACMA) \|\| ( \
1347	echo "$(SEP) Link $@"; \
1348	echo "$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(DBSYS_LIBS)"; \
1349	$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(DBSYS_LIBS) && \
1350	echo "$(SEP) Link $@ [done]"; \
1351	)
1352
1353	#********************************* arb_wetc ************************************
1354	WETC = bin/arb_wetc
1355	ARCHS_WETC = \
1356	WETC/WETC.a \
1357	SL/HELIX/HELIX.a \
1358	SL/FILTER/FILTER.a \
1359	XML/XML.a \
1360
1361	$(WETC): $(ARCHS_WETC:.a=.dummy) link_awt
1362	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_WETC) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1363	echo "$(SEP) Link $@"; \
1364	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS)" ; \
1365	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS) && \
1366	echo "$(SEP) Link $@ [done]"; \
1367	)
1368
1369	#********************************* arb_dist ************************************
1370	DIST = bin/arb_dist
1371	ARCHS_DIST = \
1372	DIST/DIST.a \
1373	CONSENSUS_TREE/CONSENSUS_TREE.a \
1374	EISPACK/EISPACK.a \
1375	SERVERCNTRL/SERVERCNTRL.a \
1376	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1377	SL/HELIX/HELIX.a \
1378	SL/MATRIX/MATRIX.a \
1379	SL/MACROS/MACROS.a \
1380	SL/NDS/NDS.a \
1381	SL/ITEMS/ITEMS.a \
1382	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.a \
1383	XML/XML.a \
1384	$(ARCHS_AP_TREE) \
1385
1386	$(DIST): $(ARCHS_DIST:.a=.dummy) link_awt
1387	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DIST) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1388	echo "$(SEP) Link $@"; \
1389	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS)" ; \
1390	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) && \
1391	echo "$(SEP) Link $@ [done]"; \
1392	)
1393
1394	#********************************* arb_pars ************************************
1395	PARSIMONY = bin/arb_pars
1396	ARCHS_PARSIMONY = \
1397	PARSIMONY/PARSIMONY.a \
1398	SERVERCNTRL/SERVERCNTRL.a \
1399	SL/AW_NAME/AW_NAME.a \
1400	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1401	SL/HELIX/HELIX.a \
1402	SL/MACROS/MACROS.a \
1403	SL/NDS/NDS.a \
1404	SL/ITEMS/ITEMS.a \
1405	SL/TRANSLATE/TRANSLATE.a \
1406	SL/TREEDISP/TREEDISP.a \
1407	XML/XML.a \
1408	$(ARCHS_AP_TREE) \
1409
1410	$(PARSIMONY): $(ARCHS_PARSIMONY:.a=.dummy) link_awt
1411	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PARSIMONY) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1412	echo "$(SEP) Link $@"; \
1413	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS)" ; \
1414	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) && \
1415	echo "$(SEP) Link $@ [done]"; \
1416	)
1417
1418	#********************************* arb_convert_aln ************************************
1419	CONVERT_ALN = bin/arb_convert_aln
1420	ARCHS_CONVERT_ALN = \
1421	CONVERTALN/CONVERTALN.a \
1422
1423	$(CONVERT_ALN) : $(ARCHS_CONVERT_ALN:.a=.dummy) link_db
1424	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_CONVERT_ALN) $(use_ARB_main) \|\| ( \
1425	echo "$(SEP) Link $@"; \
1426	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(DBSYS_LIBS)"; \
1427	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(DBSYS_LIBS) && \
1428	echo "$(SEP) Link $@ [done]"; \
1429	)
1430
1431	#********************************* arb_treegen ************************************
1432
1433	TREEGEN = bin/arb_treegen
1434	ARCHS_TREEGEN = \
1435	TREEGEN/TREEGEN.a \
1436
1437	$(TREEGEN) : $(ARCHS_TREEGEN:.a=.dummy)
1438	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_TREEGEN) $(use_ARB_main_C) \|\| ( \
1439	echo "$(SEP) Link $@"; \
1440	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN)" ; \
1441	$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN) && \
1442	echo "$(SEP) Link $@ [done]"; \
1443	)
1444
1445	#********************************* arb_naligner ************************************
1446	NALIGNER = bin/arb_naligner
1447	ARCHS_NALIGNER = \
1448	NALIGNER/NALIGNER.a \
1449	SERVERCNTRL/SERVERCNTRL.a \
1450	SL/HELIX/HELIX.a \
1451
1452	$(NALIGNER): $(ARCHS_NALIGNER:.a=.dummy) link_db
1453	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NALIGNER) $(use_ARB_main) \|\| ( \
1454	echo "$(SEP) Link $@"; \
1455	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(DBSYS_LIBS)" ; \
1456	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(DBSYS_LIBS) && \
1457	echo "$(SEP) Link $@ [done]"; \
1458	)
1459
1460	#********************************* arb_phylo ************************************
1461	PHYLO = bin/arb_phylo
1462	ARCHS_PHYLO = \
1463	PHYLO/PHYLO.a \
1464	SL/HELIX/HELIX.a \
1465	SL/FILTER/FILTER.a \
1466	SL/MACROS/MACROS.a \
1467	XML/XML.a \
1468
1469	$(PHYLO): $(ARCHS_PHYLO:.a=.dummy) link_awt
1470	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PHYLO) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1471	echo "$(SEP) Link $@"; \
1472	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS)" ; \
1473	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS) && \
1474	echo "$(SEP) Link $@ [done]"; \
1475	)
1476
1477	#***************************************************************************************
1478	# SERVER SECTION
1479	#***************************************************************************************
1480
1481	#********************************* arb_db_server ************************************
1482	DBSERVER = bin/arb_db_server
1483	ARCHS_DBSERVER = \
1484	DBSERVER/DBSERVER.a \
1485	SERVERCNTRL/SERVERCNTRL.a \
1486
1487	$(DBSERVER): $(ARCHS_DBSERVER:.a=.dummy) link_db
1488	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DBSERVER) $(ARBDB_LIB) $(use_ARB_main) \|\| ( \
1489	echo "$(SEP) Link $@"; \
1490	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS)" ; \
1491	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS) && \
1492	echo "$(SEP) Link $@ [done]"; \
1493	)
1494
1495	#********************************* arb_pt_server ************************************
1496	PROBE = bin/arb_pt_server
1497	ARCHS_PROBE_COMMON = \
1498	SL/PTCLEAN/PTCLEAN.a \
1499	SERVERCNTRL/SERVERCNTRL.a \
1500	SL/HELIX/HELIX.a \
1501
1502	ARCHS_PROBE_LINK = \
1503	$(ARCHS_PT_SERVER_LINK) \
1504	$(ARCHS_PROBE_COMMON) \
1505
1506	ARCHS_PROBE_DEPEND = \
1507	$(ARCHS_PT_SERVER) \
1508	$(ARCHS_PROBE_COMMON) \
1509
1510	$(PROBE): $(ARCHS_PROBE_DEPEND:.a=.dummy) link_db
1511	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_SERVER_PROBE) config.makefile $(use_ARB_main) \|\| ( \
1512	echo "$(SEP) Link $@"; \
1513	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARCHS_CLIENT_PROBE) $(ARBDB_LIB) $(SYSLIBS)" ; \
1514	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARCHS_CLIENT_PROBE) $(ARBDB_LIB) $(SYSLIBS) && \
1515	echo "$(SEP) Link $@ [done]"; \
1516	)
1517
1518	#********************************* arb_name_server ************************************
1519	NAMES = bin/arb_name_server
1520	ARCHS_NAMES = \
1521	NAMES/NAMES.a \
1522	SERVERCNTRL/SERVERCNTRL.a \
1523
1524	$(NAMES): $(ARCHS_NAMES:.a=.dummy) link_db
1525	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) $(use_ARB_main) \|\| ( \
1526	echo "$(SEP) Link $@"; \
1527	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS)" ; \
1528	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS) && \
1529	echo "$(SEP) Link $@ [done]"; \
1530	)
1531
1532	#********************************* SHARED LIBRARIES SECTION ************************************
1533
1534	prepare_libdir: addlibs
1535
1536	addlibs:
1537	(perl $(ARBHOME)/SOURCE_TOOLS/provide_libs.pl \
1538	"arbhome=$(ARBHOME)" \
1539	"opengl=$(OPENGL)" \
1540	"link_static=$(LINK_STATIC)" \
1541	)
1542
1543	#***************************************************************************************
1544	# Recursive calls to sub-makefiles
1545	#***************************************************************************************
1546
1547	%.depends:
1548	@cp -p $(@D)/Makefile $(@D)/Makefile.old # save old Makefile
1549	@$(MAKE) -C $(@D) -r \
1550	"AUTODEPENDS=1" \
1551	"MAIN=nothing" \
1552	"cflags=noCflagsHere_use_MAKEDEPENDFLAGS" \
1553	"cxxflags=noCxxflagsHere_use_MAKEDEPENDFLAGS" \
1554	depends
1555	@grep "^# DO NOT DELETE" $(@D)/Makefile >/dev/null
1556	@cat $(@D)/Makefile \
1557	\| SOURCE_TOOLS/fix_depends.pl "(from main)" \
1558	>$(@D)/Makefile.2
1559	@mv $(@D)/Makefile.old $(@D)/Makefile # restore old Makefile
1560	@$(ARBHOME)/SOURCE_TOOLS/mv_if_diff $(@D)/Makefile.2 $(@D)/Makefile # update Makefile if changed
1561
1562	%.proto:
1563	@($(MAKE) -C $(@D) \
1564	"AUTODEPENDS=0" \
1565	"MAIN=nothing" \
1566	"cflags=noCflags" \
1567	"cxxflags=noCxxflags" \
1568	proto 2>&1 ) \| $(ARBHOME)/SOURCE_TOOLS/asan2msg.pl
1569
1570	%.clean:
1571	@$(MAKE) -C $(@D) \
1572	"AUTODEPENDS=0" \
1573	"MAIN=nothing" \
1574	"cflags=noCflags" \
1575	"cxxflags=noCxxflags" \
1576	clean
1577
1578
1579	# stop wrong targets
1580	target_is_missing_lib_prefix:
1581	@echo "Error: Denied to build shared library target with missing 'lib'-prefix"
1582	false
1583
1584	ARBDB/ARBDB.dummy: target_is_missing_lib_prefix
1585	CORE/CORE.dummy: target_is_missing_lib_prefix
1586	AWT/AWT.dummy: target_is_missing_lib_prefix
1587	WINDOW/WINDOW.dummy: target_is_missing_lib_prefix
1588
1589	# rule to generate main target (normally a library):
1590	# @@@ check effect of setting LANG=C below
1591	%.dummy:
1592	@( export ID=$$$$; LANG=C; \
1593	(( \
1594	echo "$(SEP) Make $(@D)"; \
1595	$(MAKE) -C $(@D) -r \
1596	"AUTODEPENDS=1" \
1597	"MAIN=$(@F:.dummy=.a)" \
1598	"cflags=$(cflags) -DIN_ARB_$(subst /,_,$(@D))" \
1599	&& \
1600	echo "$(SEP) Make $(@D) [done]"; \
1601	) >$(@D).$$ID.log 2>&1 && (cat $(@D).$$ID.log;rm $(@D).$$ID.log)) \|\| (cat $(@D).$$ID.log;rm $(@D).$$ID.log;false))
1602
1603	# Additional dependencies for subtargets:
1604
1605	PROBE_COM/PROBE_COM.dummy : comtools
1606	NAMES_COM/NAMES_COM.dummy : comtools
1607
1608	com: PROBE_COM/PROBE_COM.dummy NAMES_COM/NAMES_COM.dummy
1609
1610	PROBE_COM/server.dummy:
1611	@echo Unwanted request to make target $<
1612	false
1613
1614	PROBE_COM/client.dummy:
1615	@echo Unwanted request to make target $<
1616	false
1617
1618	NAMES_COM/server.dummy:
1619	@echo Unwanted request to make target $<
1620	false
1621
1622	NAMES_COM/client.dummy:
1623	@echo Unwanted request to make target $<
1624	false
1625
1626
1627	ARBDB/libARBDB.dummy: links
1628	CORE/libCORE.dummy: links
1629
1630	PERLTOOLS/PERLTOOLS.dummy: core db
1631
1632	# all subdirs perl not depends on go here (ADD_links_non_perl)
1633	AWT/libAWT.dummy: links_non_perl
1634	AWTI/AWTI.dummy: links_non_perl
1635	CONSENSUS_TREE/CONSENSUS_TREE.dummy: links_non_perl
1636	CONVERTALN/CONVERTALN.dummy: links_non_perl
1637	DBSERVER/DBSERVER.dummy: links_non_perl
1638	DIST/DIST.dummy: links_non_perl
1639	EDIT4/EDIT4.dummy: links_non_perl com
1640	EISPACK/EISPACK.dummy: links_non_perl
1641	GDE/GDE.dummy: links_non_perl
1642	GENOM/GENOM.dummy: links_non_perl
1643	GENOM_IMPORT/GENOM_IMPORT.dummy: links_non_perl
1644	ISLAND_HOPPING/ISLAND_HOPPING.dummy: links_non_perl
1645	MERGE/MERGE.dummy: links_non_perl
1646	NTREE/NTREE.dummy: links_non_perl
1647	PARSIMONY/PARSIMONY.dummy: links_non_perl
1648	PHYLO/PHYLO.dummy: links_non_perl
1649	PRIMER_DESIGN/PRIMER_DESIGN.dummy: links_non_perl
1650	PROBE_SET/PROBE_SET.dummy: links_non_perl link_db
1651	READSEQ/READSEQ.dummy: links_non_perl
1652	RNACMA/RNACMA.dummy: links_non_perl header_libs
1653	SECEDIT/SECEDIT.dummy: links_non_perl
1654	SEQ_QUALITY/SEQ_QUALITY.dummy: links_non_perl
1655	SERVERCNTRL/SERVERCNTRL.dummy: links_non_perl com
1656	SL/ALILINK/ALILINK.dummy: links_non_perl
1657	SL/ALIVIEW/ALIVIEW.dummy: links_non_perl
1658	SL/AP_TREE/AP_TREE.dummy: links_non_perl
1659	SL/ARB_TREE/ARB_TREE.dummy: links_non_perl
1660	SL/AW_HELIX/AW_HELIX.dummy: links_non_perl
1661	SL/CONSENSUS/CONSENSUS.dummy: links_non_perl
1662	SL/DB_QUERY/DB_QUERY.dummy: links_non_perl
1663	SL/DB_SCANNER/DB_SCANNER.dummy: links_non_perl
1664	SL/DB_UI/DB_UI.dummy: links_non_perl
1665	SL/FAST_ALIGNER/FAST_ALIGNER.dummy: links_non_perl
1666	SL/FILTER/FILTER.dummy: links_non_perl
1667	SL/FILTSEQEXP/FILTSEQEXP.dummy: links_non_perl
1668	SL/GROUP_SEARCH/GROUP_SEARCH.dummy: links_non_perl
1669	SL/GUI_ALIVIEW/GUI_ALIVIEW.dummy: links_non_perl
1670	SL/HELIX/HELIX.dummy: links_non_perl
1671	SL/INSDEL/INSDEL.dummy: links_non_perl
1672	SL/ITEM_SHADER/ITEM_SHADER.dummy: links_non_perl
1673	SL/ITEMS/ITEMS.dummy: links_non_perl
1674	SL/LOCATION/LOCATION.dummy: links_non_perl
1675	SL/MACROS/MACROS.dummy: links_non_perl
1676	SL/MATRIX/MATRIX.dummy: links_non_perl
1677	SL/NDS/NDS.dummy: links_non_perl
1678	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.dummy: links_non_perl
1679	SL/PRONUC/PRONUC.dummy: links_non_perl
1680	SL/PTCLEAN/PTCLEAN.dummy: links_non_perl link_db
1681	SL/QUERY/QUERY.dummy: links_non_perl link_db
1682	SL/REFENTRIES/REFENTRIES.dummy: links_non_perl
1683	SL/REGEXPR/REGEXPR.dummy: links_non_perl
1684	SL/SEQIO/SEQIO.dummy: links_non_perl
1685	SL/SEQUENCE/SEQUENCE.dummy: links_non_perl
1686	SL/TRANSLATE/TRANSLATE.dummy: links_non_perl
1687	SL/TREE_ADMIN/TREE_ADMIN.dummy: links_non_perl
1688	SL/TREE_READ/TREE_READ.dummy: links_non_perl
1689	SL/TREE_WRITE/TREE_WRITE.dummy: links_non_perl
1690	SL/TREEDISP/TREEDISP.dummy: links_non_perl
1691	STAT/STAT.dummy: links_non_perl
1692	TREEGEN/TREEGEN.dummy: links_non_perl
1693	WETC/WETC.dummy: links_non_perl
1694	WINDOW/libWINDOW.dummy: links_non_perl
1695	XML/XML.dummy: links_non_perl
1696
1697	ifeq ($(OPENGL),1)
1698	GL/glAW/glAW.dummy: links_non_perl
1699	GL/glpng/glpng.dummy: links_non_perl
1700	GL/GL.dummy: GL/glAW/glAW.dummy GL/glpng/glpng.dummy
1701	RNA3D/RNA3D.dummy: links_non_perl gl
1702	endif
1703
1704	UNIT_TESTER/UNIT_TESTER.dummy: link_db \
1705	SERVERCNTRL/SERVERCNTRL.dummy \
1706
1707	# see also TOOLS/Makefile@TOOLSLIBDEPENDS
1708	TOOLS/TOOLS.dummy : links_non_perl link_db \
1709	CONSENSUS_TREE/CONSENSUS_TREE.dummy \
1710	SERVERCNTRL/SERVERCNTRL.dummy \
1711	SL/FILTER/FILTER.dummy \
1712	SL/FILTSEQEXP/FILTSEQEXP.dummy \
1713	SL/INSDEL/INSDEL.dummy \
1714	SL/REGEXPR/REGEXPR.dummy \
1715	SL/SEQIO/SEQIO.dummy \
1716	SL/TREE_READ/TREE_READ.dummy \
1717	SL/TREE_WRITE/TREE_WRITE.dummy \
1718	XML/XML.dummy \
1719
1720	AWTC/AWTC.dummy : com
1721
1722	NAMES/NAMES.dummy : com
1723	SL/AW_NAME/AW_NAME.dummy : com
1724
1725	PROBE/PROBE.dummy : com
1726	ptpan/PROBE.dummy : com
1727	MULTI_PROBE/MULTI_PROBE.dummy : com
1728	PROBE_DESIGN/PROBE_DESIGN.dummy : com
1729	NALIGNER/NALIGNER.dummy : com
1730
1731	ARB_GDE/ARB_GDE.dummy : proto_tools
1732
1733	compile_compatibility: SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.dummy
1734
1735	#***************************************************************************************
1736	# Short aliases to make targets
1737	#***************************************************************************************
1738
1739	show:
1740	@echo $(SEP)
1741	@echo 'Aliases for often needed targets:'
1742	@echo ''
1743	@echo ' executables:'
1744	@echo ''
1745	@echo ' nt arb_ntree'
1746	@echo ' e4 arb_edit4 (includes secedit)'
1747	@echo ' di arb_dist'
1748	@echo ' ph arb_phylo'
1749	@echo ' pa arb_parsimony'
1750	@echo ' tg arb_treegen'
1751	@echo ' ds arb_dbserver'
1752	@echo ' pt arb_pt_server'
1753	@echo ' na arb_name_server'
1754	@echo ''
1755	@echo ' libraries:'
1756	@echo ''
1757	@echo ' com communication libraries'
1758	@echo ' db ARB database'
1759	@echo ' aw GUI lib'
1760	@echo ' awt GUI toolkit'
1761	@echo ' awtc general purpose library'
1762	@echo ' awti import/export library'
1763	@echo ' mp multi probe library'
1764	@echo ' ge genome library'
1765	@echo ' pd probe design lib'
1766	@echo ' prd primer design lib'
1767	@echo ''
1768	@echo ' other targets:'
1769	@echo ''
1770	@echo ' help recompile help files'
1771	@echo ' tools make small tools used by arb'
1772	@echo ''
1773	@echo ' foreign targets:'
1774	@echo ''
1775	@echo ' gde GDE'
1776	@echo ' agde ARB_GDE'
1777	@echo ''
1778	@echo 'for other targets inspect $(ARBHOME)/Makefile'
1779	@echo ''
1780	@echo $(SEP)
1781
1782	source_doc:
1783	@echo "Remove some links (doxygen crashes otherwise):"
1784	find . \( -name "AISC" -o -name "C" -o -name "GDEHELP" \) -type l -exec rm {} \;
1785	doxygen 2>&1 1>/dev/null
1786	$(MAKE) forcelinks
1787
1788	dep_graph:
1789	@echo "Building some dependency graphs"
1790	SOURCE_TOOLS/dependency_graphs.pl
1791
1792	help: HELP_SOURCE/HELP_SOURCE.dummy
1793
1794	HELP_SOURCE/HELP_SOURCE.dummy: link_core xml menus
1795
1796	db: ARBDB/libARBDB.dummy
1797	core: CORE/libCORE.dummy
1798	aw: WINDOW/libWINDOW.dummy
1799	awt: AWT/libAWT.dummy
1800	awtc: AWTC/AWTC.dummy
1801	awti: AWTI/AWTI.dummy
1802
1803	mp: MULTI_PROBE/MULTI_PROBE.dummy
1804	mg: MERGE/MERGE.dummy
1805	ge: GENOM/GENOM.dummy
1806	prd: PRIMER_DESIGN/PRIMER_DESIGN.dummy
1807
1808	nt: menus $(NTREE)
1809
1810	nal: $(NALIGNER)
1811
1812	di: $(DIST)
1813	ph: $(PHYLO)
1814	pa: $(PARSIMONY)
1815	tg: $(TREEGEN)
1816
1817	ifeq ($(OPENGL),1)
1818	3d: RNA3D/RNA3D.dummy
1819	gl: GL/GL.dummy
1820	else
1821	noopengl:
1822	@echo "invalid target for OPENGL=0"
1823	3d: noopengl
1824	gl: noopengl
1825	endif
1826
1827	SL/SL.dummy: com
1828
1829	ds: $(DBSERVER)
1830	pt: $(PROBE)
1831	pst: PROBE_SET/PROBE_SET.dummy
1832	pd: PROBE_DESIGN/PROBE_DESIGN.dummy
1833	na: $(NAMES)
1834	sq: SEQ_QUALITY/SEQ_QUALITY.dummy
1835	cma: $(RNACMA)
1836
1837	sec: SECEDIT/SECEDIT.dummy
1838
1839	e4: $(EDIT4) readseq menus
1840
1841	gi: GENOM_IMPORT/GENOM_IMPORT.dummy
1842	wetc: $(WETC)
1843
1844	xml: XML/XML.dummy
1845	xmlin: XML_IMPORT/XML_IMPORT.dummy# broken
1846	stat: STAT/STAT.dummy $(NTREE) $(EDIT4)
1847	fa: SL/FAST_ALIGNER/FAST_ALIGNER.dummy
1848
1849	#********************************************************************************
1850
1851	up_by_remake: depends proto vectorize_checks
1852
1853	up: up_by_remake tags valgrind_update
1854
1855	#********************************************************************************
1856
1857	touch:
1858	SOURCE_TOOLS/touch_modified.pl
1859
1860	modified: touch
1861	$(MAKE) all
1862
1863	#********************************************************************************
1864
1865	libdepends:
1866	$(MAKE) -C "SOURCE_TOOLS" \
1867	"RNA3D_LIB=$(RNA3D_LIB_4_DEPENDS)" \
1868	libdepends
1869
1870	#********************************************************************************
1871
1872	# create generated headers:
1873	genheaders: TEMPLATES/TEMPLATES.dummy
1874
1875	clrdotdepends:
1876	rm PROBE_COM/.depends \|\| true
1877	rm NAMES_COM/.depends \|\| true
1878	rm PERL2ARB/.depends \|\| true
1879
1880	comdepends: comtools clrdotdepends
1881	@echo "$(SEP) Partially build com interface"
1882	$(MAKE) PROBE_COM/PROBE_COM.depends NAMES_COM/NAMES_COM.depends
1883	$(MAKE) PROBE_COM/server.depends NAMES_COM/server.depends
1884
1885	depends: genheaders comdepends vectorize_checks
1886	@echo "$(SEP) Updating other dependencies"
1887	$(MAKE) $(subst NAMES_COM/server.depends,,$(subst PROBE_COM/server.depends,,$(ARCHS:.a=.depends))) \
1888	HELP_SOURCE/HELP_SOURCE.depends \
1889	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.depends \
1890
1891	$(MAKE) libdepends
1892
1893	depend: depends
1894
1895	# ------------------------------------------------------------
1896	# dependency generation tests for AISC code
1897	#(all should work w/o creating wrong dependencies;
1898	# neither in XXX_COM/Makefile nor in code using AISC interface)
1899	dependstest1: silent_clean
1900	$(MAKE) depends
1901	dependstest2: silent_clean
1902	$(MAKE) com
1903	dependstest3: silent_clean
1904	$(MAKE) aw
1905	dependstest4: silent_clean
1906	$(MAKE) pt
1907	dependstest5: silent_clean
1908	$(MAKE) na
1909	dependstest6: silent_clean
1910	$(MAKE) nt
1911	dependstest7: silent_clean
1912	$(MAKE) all
1913	# ------------------------------------------------------------
1914
1915	vectorize_checks:
1916	$(MAKE) -C SOURCE_TOOLS -r vectorize_checks
1917
1918	# ------------------------------------------------------------
1919
1920	AISC_MKPTPS/AISC_MKPTPS.dummy: links
1921
1922	proto_tools: AISC_MKPTPS/AISC_MKPTPS.dummy
1923
1924	proto: proto_tools
1925	@echo $(SEP) Updating prototypes
1926	$(MAKE) \
1927	ARBDB/ARBDB.proto \
1928	AISC_COM/AISC_COM.proto \
1929	ARB_GDE/ARB_GDE.proto \
1930	CORE/CORE.proto \
1931	CONVERTALN/CONVERTALN.proto \
1932	NTREE/NTREE.proto \
1933	MERGE/MERGE.proto \
1934	$(ARCHS_PT_SERVER:.a=.proto) \
1935	SERVERCNTRL/SERVERCNTRL.proto \
1936	SL/SL.proto \
1937
1938	#********************************************************************************
1939
1940	valgrind_update: links
1941	@echo $(SEP) Updating for valgrind
1942	$(MAKE) -C SOURCE_TOOLS valgrind_update
1943
1944	#********************************************************************************
1945
1946	TAGFILE=TAGS
1947	TAGFILE_TMP=TAGS.tmp
1948
1949	TAG_SOURCE_HEADERS=TAGS.headers
1950	TAG_SOURCE_CODE=TAGS.codefiles
1951	TAG_SOURCE_LISTS=$(TAG_SOURCE_HEADERS) $(TAG_SOURCE_CODE)
1952
1953	ETAGS_IGNORE_LIST=SOURCE_TOOLS/etags_ignore.lst
1954
1955	ETAGS=ctags -e -I @$(ETAGS_IGNORE_LIST) --sort=no --if0=no --extra=q
1956	ETAGS_TYPES=--C-kinds=cgnsut --C++-kinds=cgnsut
1957	ETAGS_FUN =--C-kinds=fm --C++-kinds=fm
1958	ETAGS_REST =--C-kinds=dev --C++-kinds=dev
1959
1960	FILTER_TAGS_SOURCES= \
1961	$(SED) -e 's/^.\///g' \| \
1962	grep -vi '^HEADERLIBS\\|^GDE/\\|/GEN[CH]/'
1963
1964	$(TAG_SOURCE_HEADERS): links
1965	find . \( -name '.hxx' -o -name ".h" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1966
1967	$(TAG_SOURCE_CODE): links
1968	find . \( -name '.cxx' -o -name ".c" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1969
1970	TAGS.1.tmp: $(TAG_SOURCE_HEADERS)
1971	$(ETAGS) -f $@ $(ETAGS_TYPES) -L $<
1972	TAGS.2.tmp: $(TAG_SOURCE_HEADERS)
1973	$(ETAGS) -f $@ $(ETAGS_FUN) -L $<
1974	TAGS.3.tmp: $(TAG_SOURCE_HEADERS)
1975	$(ETAGS) -f $@ $(ETAGS_REST) -L $<
1976	TAGS.4.tmp: $(TAG_SOURCE_CODE)
1977	$(ETAGS) -f $@ $(ETAGS_TYPES) -L $<
1978	TAGS.5.tmp: $(TAG_SOURCE_CODE)
1979	$(ETAGS) -f $@ $(ETAGS_FUN) -L $<
1980	TAGS.6.tmp: $(TAG_SOURCE_CODE)
1981	$(ETAGS) -f $@ $(ETAGS_REST) -L $<
1982
1983	TAGS_ALL_PARTS=TAGS.1.tmp TAGS.2.tmp TAGS.3.tmp TAGS.4.tmp TAGS.5.tmp TAGS.6.tmp
1984
1985	$(TAGFILE_TMP) : $(TAGS_ALL_PARTS)
1986	cat $(TAGS_ALL_PARTS) > $@
1987	rm $(TAGS_ALL_PARTS) $(TAG_SOURCE_LISTS)
1988
1989	tags: $(TAGFILE_TMP)
1990	mv_if_diff $(TAGFILE_TMP) $(TAGFILE)
1991
1992	#********************************************************************************
1993
1994	LINKSTAMP=SOURCE_TOOLS/stamp.generate_all_links
1995
1996	links: checks $(LINKSTAMP) arbmainwrapper
1997	links_no_checks: $(LINKSTAMP) arbmainwrapper
1998
1999	forcelinks:
2000	-rm $(LINKSTAMP)
2001	$(MAKE) links
2002
2003	$(LINKSTAMP): SOURCE_TOOLS/generate_all_links.sh genheaders
2004	+SOURCE_TOOLS/generate_all_links.sh
2005	touch $(LINKSTAMP)
2006
2007	clean_links:
2008	# avoid to delete linked pts, nas or arb_tcp.dat:
2009	find . -path './lib' -prune -o -type l -exec rm {} \;
2010	# removed obsolete file - refuses to disappear due to 'prune' above
2011	@rm -f lib/help/GDEHELP
2012	@rm -f $(LINKSTAMP) lib/inputMasks/format.readme
2013
2014	redo_links: clean_links
2015	$(MAKE) links_no_checks
2016
2017	#********************************************************************************
2018
2019	header_libs:
2020	@(( \
2021	echo "$(SEP) Make HEADERLIBS"; \
2022	$(MAKE) -C HEADERLIBS all && \
2023	echo "$(SEP) Make HEADERLIBS [done]"; \
2024	) > HEADERLIBS.log 2>&1 && (cat HEADERLIBS.log;rm HEADERLIBS.log)) \|\| (cat HEADERLIBS.log;rm HEADERLIBS.log;false)
2025
2026	#********************************************************************************
2027
2028	gde: GDE/GDE.dummy
2029	GDE: gde
2030	agde: ARB_GDE/ARB_GDE.dummy
2031	tools: TOOLS/TOOLS.dummy
2032	convert: $(CONVERT_ALN)
2033	readseq: READSEQ/READSEQ.dummy
2034
2035	#***************************************************************************************
2036	# Some user commands
2037	#***************************************************************************************
2038
2039	menus: binlink links
2040	@(( \
2041	echo "$(SEP) Make GDEHELP"; \
2042	$(MAKE) -C GDEHELP -r all && \
2043	echo "$(SEP) Make GDEHELP [done]"; \
2044	) > GDEHELP.log 2>&1 && (cat GDEHELP.log;rm GDEHELP.log)) \|\| (cat GDEHELP.log;rm GDEHELP.log;false)
2045
2046	ifeq ($(DEBUG),1)
2047	BIN_TARGET=develall
2048	else
2049	BIN_TARGET=all
2050	endif
2051
2052
2053	binlink:
2054	$(MAKE) -C bin $(BIN_TARGET)
2055
2056	check_bin_dep: binlink
2057	SOURCE_TOOLS/check_bin_dependencies.pl
2058
2059	preplib:
2060	(cd lib;$(MAKE) all)
2061
2062	# --------------------------------------------------------------------------------
2063	# This section is quite tricky:
2064	#
2065	# make 'perl' is a BIG target, so when it has to be made, it has to be started
2066	# as early as possible to reduce overall compile time. Since 'make' does not
2067	# provide any priotities, i force it to build all 'perl'-prerequisites early, by
2068	# adding artificial dependencies to these prerequisites
2069	#
2070	# That behavior is likely to be system-dependent.
2071	# My goal was only to make it work on my current development system,
2072	# where this saves about 20% of overall build time.
2073
2074	ifeq ($(WITHPERL),1)
2075	links_non_perl: PERLTOOLS/PERLTOOLS.dummy
2076	perltools: links_non_perl
2077	perl: realperl
2078	else
2079	links_non_perl: links
2080	perl:
2081	$(MAKE) "WITHPERL=1" perl
2082	endif
2083
2084	# ---------------------------------------- perl
2085
2086	ifeq ($(ARB_64),$(BUILDHOST_64))
2087	TEST_PERL_SCRIPTS=$(MAKE) -C PERL_SCRIPTS/test test
2088	else
2089	TEST_PERL_SCRIPTS=echo "skipping perl script compilation (when cross-compiling)"
2090	endif
2091
2092	realperl: perltools
2093	(( \
2094	echo "$(SEP) Make PERL2ARB" ; \
2095	$(TIME) $(MAKE) -C PERL2ARB -r -f Makefile.main \
2096	"AUTODEPENDS=1" \
2097	"dflags=$(dflags)" \
2098	"cflags4perl=$(cflags) $(cxxflags) $(dflags)" \
2099	"lflags4perl=$(lflags4perl)" \
2100	"COMPILER_VERSION=$(COMPILER_VERSION)" \
2101	all && \
2102	$(TEST_PERL_SCRIPTS) && \
2103	echo "$(SEP) Make PERL2ARB [done]" ; \
2104	) > PERL2ARB.log 2>&1 && (cat PERL2ARB.log;rm PERL2ARB.log)) \|\| (cat PERL2ARB.log;rm PERL2ARB.log;false)
2105
2106	perl_clean:
2107	@$(MAKE) -C PERL2ARB -r -f Makefile.main \
2108	"AUTODEPENDS=0" \
2109	clean
2110
2111	PERL2ARB/PERL2ARB.clean:
2112	$(MAKE) perl_clean
2113	$(MAKE) -C PERL_SCRIPTS/test clean
2114
2115	# ---------------------------------------- bindings to script languages
2116
2117	bindings: lib/libCORE.so lib/libARBDB.so
2118	$(MAKE) -C BINDINGS all ARBDEPENDS="$(^:%=../%)" DFLAGS="$(dflags)"
2119
2120	bindings_clean:
2121	$(MAKE) -C BINDINGS clean
2122
2123	# ----------------------------------------
2124
2125	CLOC=cloc-1.08.pl
2126	CLOCFLAGS=--no3 --quiet --progress-rate=0
2127	CLOCARB=--exclude-dir=GDE .
2128	CLOCEXT=GDE
2129	CLOCCODE=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.code.def
2130	CLOCREST=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.rest.def
2131	CLOCFILT=tail --lines=+4
2132
2133	cloc:
2134	@echo 'Arb code:'
2135	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCARB) \| $(CLOCFILT)
2136	@echo 'Arb rest:'
2137	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCARB) \| $(CLOCFILT)
2138	@echo 'External code:'
2139	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCEXT) \| $(CLOCFILT)
2140	@echo 'External rest:'
2141	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCEXT) \| $(CLOCFILT)
2142
2143	# ---------------------------------------- check resources
2144
2145	check_res:
2146	$(ARBHOME)/SOURCE_TOOLS/check_resources.pl
2147
2148	# ---------------------------------------- cleaning
2149
2150	rmbak:
2151	@echo "[cleanup backup/core files]"
2152	@find . \( -name '*%' \
2153	-o -name '*.bak' \
2154	-o -name '*~' \) \
2155	-o \( -name 'core' -a \! -type d \) \
2156	-exec rm -v {} \; \|\| \
2157	echo "Warning: target 'rmbak' reported problems when removing misc. backup files (ignored)"
2158	@echo "[cleanup done]"
2159
2160	bin_reinit:
2161	$(MAKE) bin/bin.clean
2162	$(MAKE) -C "bin" all
2163
2164	clean_directories:
2165	-rm -rf \
2166	$(ARBHOME)/PROBE_SET/bin \
2167	$(ARBHOME)/INCLUDE \
2168
2169	libclean:
2170	-find $(ARBHOME) -type f \( -name '*.a' ! -type l \) -exec rm -f {} \;
2171
2172	objclean:
2173	-find $(ARBHOME) -type f \( -name '*.o' ! -type l \) -exec rm -f {} \;
2174
2175	# bin.clean and HELP_SOURCE.clean interfere
2176	clean3:
2177	$(MAKE) bin/bin.clean
2178	$(MAKE) HELP_SOURCE/HELP_SOURCE.clean
2179
2180	clean2: $(ARCHS:.a=.clean) \
2181	clean3 \
2182	rmbak \
2183	libclean \
2184	objclean \
2185	lib/lib.clean \
2186	GDEHELP/GDEHELP.clean \
2187	HEADERLIBS/HEADERLIBS.clean \
2188	SOURCE_TOOLS/SOURCE_TOOLS.clean \
2189	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.clean \
2190	UNIT_TESTER/UNIT_TESTER.clean \
2191	TEMPLATES/TEMPLATES.clean \
2192	perl_clean \
2193	clean_directories \
2194
2195	rm -f .last_gcc .last_compiler config.makefile.bak
2196
2197	# links are needed for cleanup
2198	clean: redo_links motif_xpm_hack_clean
2199	$(MAKE) clean2
2200	$(MAKE) clean_cov_all clean_links
2201
2202	silent_clean:
2203	$(MAKE) clean >/dev/null
2204
2205	# 'relocated' is about 50% faster than 'rebuild'
2206	reloc_clean: links
2207	@echo "---------------------------------------- Relocation cleanup"
2208	$(MAKE) \
2209	perl_clean \
2210	GDEHELP/GDEHELP.clean \
2211	HELP_SOURCE/genhelp/genhelp.clean \
2212	bin/bin.clean \
2213	libclean \
2214	objclean
2215
2216	relocated: links
2217	$(MAKE) reloc_clean
2218	@echo "---------------------------------------- and remake"
2219	$(MAKE) build
2220
2221	# -----------------------------------
2222	# some stress tests
2223	# (helpful to reveal race conditions with -j)
2224
2225	rebuild4ever: rebuild
2226	$(MAKE) rebuild4ever
2227
2228	build4ever: build
2229	$(MAKE) build4ever
2230
2231	clean4ever: clean
2232	$(MAKE) clean4ever
2233
2234	test4ever: ut
2235	$(MAKE) test4ever
2236
2237	perl4ever: clean
2238	$(MAKE) links
2239	$(MAKE) perl
2240	$(MAKE) perl4ever
2241
2242	help4ever: clean
2243	$(MAKE) help
2244	$(MAKE) help4ever
2245
2246	# -----------------------------------
2247
2248	rebuild: clean
2249	$(MAKE) all
2250
2251	cleanlinked: bin/bin.clean libclean
2252
2253	relink: cleanlinked
2254	$(MAKE) all
2255
2256	tarfile: rebuild
2257	$(MAKE) prepare_libdir
2258	util/arb_compress
2259
2260	tarfile_quick: build
2261	$(MAKE) prepare_libdir
2262	util/arb_compress
2263
2264	save: sourcetarfile
2265
2266	patch:
2267	SOURCE_TOOLS/arb_create_patch.sh arbPatch
2268
2269	# test early whether save will work
2270	savetest:
2271	@util/arb_srclst.pl >/dev/null
2272
2273	testsave: savetest
2274
2275	sourcetarfile: rmbak
2276	util/arb_save
2277
2278	save2: rmbak
2279	util/arb_save ignore
2280
2281	save_test: rmbak
2282	@echo "Testing source list.."
2283	@util/arb_srclst.pl > /dev/null
2284
2285	save_test_no_error:
2286	@-$(MAKE) save_test
2287
2288	inc_candi:
2289	touch SOURCE_TOOLS/inc_candi.stamp
2290	$(MAKE) do_version_update
2291
2292	inc_patch:
2293	touch SOURCE_TOOLS/inc_patch.stamp
2294	$(MAKE) do_version_update
2295
2296	inc_minor:
2297	touch SOURCE_TOOLS/inc_minor.stamp
2298	$(MAKE) do_version_update
2299
2300	inc_major:
2301	touch SOURCE_TOOLS/inc_major.stamp
2302	$(MAKE) do_version_update
2303
2304	do_version_update:
2305	@echo Incrementing version information
2306	$(MAKE) savetest
2307	$(MAKE) genheaders # auto upgrades version early
2308
2309	show_version:
2310	$(MAKE) genheaders # updates version info
2311	@echo "$(SEP) ARB version info"
2312	@grep ARB_VERSION TEMPLATES/arb_build.h
2313	@echo "$(SEP)"
2314
2315	release_quick:
2316	-rm arb.tgz arbsrc.tgz
2317	$(MAKE) tarfile_quick
2318	$(MAKE) sourcetarfile
2319
2320	# --------------------------------------------------------------------------------
2321	# special cleanups
2322
2323	clean_opengl_changed: RNA3D/RNA3D.clean EDIT4/EDIT4.clean WINDOW/WINDOW.clean GL/GL.clean
2324
2325	# --------------------------------------------------------------------------------
2326
2327	MAKE_IF_COMMITTED=$(MAKE) -C SOURCE_TOOLS -f Makefile.commitbuild
2328
2329	build_CTARGET:
2330	+$(MAKE_IF_COMMITTED) "CTARGET=$(CTARGET)" build_CTARGET
2331
2332	reset_committed_build:
2333	+$(MAKE_IF_COMMITTED) reset
2334
2335	# --------------------------------------------------------------------------------
2336
2337	arbapplications: nt pa e4 wetc pt na nal di ph ds wetc cma
2338
2339	arb_external: convert tools gde readseq tg pst xmlin
2340
2341	arb_no_perl: arbapplications help arb_external
2342
2343	arb: motif_xpm_hack
2344	$(MAKE) "WITHPERL=1" perl arb_no_perl
2345
2346	motif_xpm_hack:
2347	$(MAKE) -r -C "lib/motifHack" all
2348
2349	motif_xpm_hack_clean:
2350	$(MAKE) -r -C "lib/motifHack" clean
2351
2352	# --------------------------------------------------------------------------------
2353	# special targets for SOURCE_TOOLS/remake_after_change.pl
2354
2355	rac_arb_dist: di
2356	rac_arb_edit4: e4
2357	rac_arb_ntree: nt
2358	rac_arb_pars: pa
2359	rac_arb_phylo: ph
2360	rac_arb_wetc: wetc
2361	rac_arb_naligner: nal
2362	rac_arb_pt_server: pt
2363	rac_arb_db_server: ds
2364	rac_arb_name_server: na
2365	rac_arb_convert_aln: convert
2366	rac_arb_treegen: tg
2367	rac_arb_rnacma: cma
2368	rac_arb_help2xml: help
2369
2370	rac_arb_a2ps: tools
2371	rac_arb_consensus_tree: tools
2372	rac_arb_dnarates: tools
2373	rac_arb_export_rates: tools
2374	rac_arb_export_tree: tools
2375	rac_arb_gene_probe: tools
2376	rac_arb_message: tools
2377	rac_arb_primer: tools
2378	rac_arb_probe: tools
2379	rac_arb_read_tree: tools
2380
2381	# --------------------------------------------------------------------------------
2382	# unit testing
2383	# @@@ work in progress
2384	#
2385	# goal is to automatically test all libraries/executables using TESTED_UNITS_AUTO
2386	#
2387	# currently not all test executables link w/o error
2388	# (see UNITS_WORKING, UNITS_UNTESTABLE_ATM and UNITS_NEED_FIX)
2389
2390	# define RNA3D/RNA3D.test
2391	RNA3D_TEST := $(subst .a,.test,$(RNA3D_LIB))
2392
2393	TESTED_UNITS_AUTO = $(ARCHS:.a=.test)
2394
2395	UNITS_WORKING = \
2396	$(RNA3D_TEST) \
2397	EISPACK/EISPACK.test \
2398	GENOM/GENOM.test \
2399	GL/glAW/libglAW.test \
2400	GL/glpng/libglpng_arb.test \
2401	ISLAND_HOPPING/ISLAND_HOPPING.test \
2402	NALIGNER/NALIGNER.test \
2403	NAMES/NAMES.test \
2404	PHYLO/PHYLO.test \
2405	PRIMER_DESIGN/PRIMER_DESIGN.test \
2406	PROBE_DESIGN/PROBE_DESIGN.test \
2407	SECEDIT/SECEDIT.test \
2408	SEQ_QUALITY/SEQ_QUALITY.test \
2409	SERVERCNTRL/SERVERCNTRL.test \
2410	SL/ALIVIEW/ALIVIEW.test \
2411	SL/AP_TREE/AP_TREE.test \
2412	SL/ARB_TREE/ARB_TREE.test \
2413	SL/AW_HELIX/AW_HELIX.test \
2414	SL/AW_NAME/AW_NAME.test \
2415	SL/DB_SCANNER/DB_SCANNER.test \
2416	SL/GUI_ALIVIEW/GUI_ALIVIEW.test \
2417	SL/HELIX/HELIX.test \
2418	SL/LOCATION/LOCATION.test \
2419	SL/MATRIX/MATRIX.test \
2420	SL/QUERY/QUERY.test \
2421	SL/REFENTRIES/REFENTRIES.test \
2422	SL/SEQUENCE/SEQUENCE.test \
2423	SL/TRANSLATE/TRANSLATE.test \
2424	SL/TREE_ADMIN/TREE_ADMIN.test \
2425	SL/TREE_WRITE/TREE_WRITE.test \
2426	STAT/STAT.test \
2427	TREEGEN/TREEGEN.test \
2428	WETC/WETC.test \
2429	XML/XML.test \
2430
2431	# untestable units
2432
2433	UNITS_NEED_FIX = \
2434	ptpan/PROBE.test \
2435
2436	UNITS_UNTESTABLE_ATM = \
2437	XML_IMPORT/XML_IMPORT.test \
2438
2439	# for the moment, put all units containing tests into the following 4 sections (see also TESTED_UNITS below)
2440
2441	# recent development
2442	UNITS_TESTED_FIRST = \
2443	AWTI/AWTI.test \
2444	SL/FILTSEQEXP/FILTSEQEXP.test \
2445	SL/GROUP_SEARCH/GROUP_SEARCH.test \
2446
2447	# start units with long duration early
2448	UNITS_RUNNING_LONG = \
2449	ARBDB/libARBDB.test \
2450	AWTC/AWTC.test \
2451	TOOLS/arb_test.test \
2452
2453	# plain test-libaries that are not linked anywhere
2454	TEST_SANDBOXES = \
2455	SL/CB/CB.test \
2456
2457	UNITS_TESTED = \
2458	AISC_MKPTPS/mkptypes.test \
2459	ARB_GDE/ARB_GDE.test \
2460	AWT/libAWT.test \
2461	CONSENSUS_TREE/CONSENSUS_TREE.test \
2462	CONVERTALN/CONVERTALN.test \
2463	CORE/libCORE.test \
2464	DBSERVER/DBSERVER.test \
2465	DIST/DIST.test \
2466	EDIT4/EDIT4.test \
2467	GENOM_IMPORT/GENOM_IMPORT.test \
2468	HELP_SOURCE/arb_help2xml.test \
2469	MERGE/MERGE.test \
2470	MULTI_PROBE/MULTI_PROBE.test \
2471	NTREE/NTREE.test \
2472	PARSIMONY/PARSIMONY.test \
2473	PERLTOOLS/arb_proto_2_xsub.test \
2474	PROBE/PROBE.test \
2475	PROBE_SET/fb_test.test \
2476	SERVERCNTRL/SERVERCNTRL.test \
2477	SL/ALILINK/ALILINK.test \
2478	SL/CONSENSUS/CONSENSUS.test \
2479	SL/DB_QUERY/DB_QUERY.test \
2480	SL/FAST_ALIGNER/FAST_ALIGNER.test \
2481	SL/FILTER/FILTER.test \
2482	SL/INSDEL/INSDEL.test \
2483	SL/ITEM_SHADER/ITEM_SHADER.test \
2484	SL/ITEMS/ITEMS.test \
2485	SL/MACROS/MACROS.test \
2486	SL/NDS/NDS.test \
2487	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.test \
2488	SL/PRONUC/PRONUC.test \
2489	SL/PTCLEAN/PTCLEAN.test \
2490	SL/REGEXPR/REGEXPR.test \
2491	SL/SEQIO/SEQIO.test \
2492	SL/TREE_READ/TREE_READ.test \
2493	SL/TREEDISP/TREEDISP.test \
2494	TOOLS/arb_consensus_tree.test \
2495	TOOLS/arb_probe.test \
2496	WINDOW/libWINDOW.test \
2497
2498	TESTED_UNITS = \
2499	$(UNITS_TESTED_FIRST) \
2500	$(UNITS_RUNNING_LONG) \
2501	$(TEST_SANDBOXES) \
2502	$(UNITS_TESTED) \
2503
2504	# see UNIT_TESTER/sym2testcode.pl@disableErrorOnUnitsWithoutTests
2505
2506	# ----------------------------------------
2507
2508	TEST_LOG_DIR = UNIT_TESTER/logs
2509	TEST_RUN_SUITE=$(MAKE) $(NODIR) -C UNIT_TESTER -f Makefile.suite -r
2510	TEST_MAKE_FLAGS=
2511	TEST_POST_CLEAN=
2512	ifeq ($(COVERAGE),1)
2513	TEST_POST_CLEAN=$(MAKE) clean_cov
2514	TEST_MAKE_FLAGS+=-j1
2515	endif
2516
2517
2518	%.test:
2519	-@( export ID=$$$$; mkdir -p $(TEST_LOG_DIR); \
2520	( \
2521	echo "fake[1]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"; \
2522	$(MAKE) -C UNIT_TESTER -f Makefile.test -r \
2523	"UNITDIR=$(@D)" \
2524	"UNITLIBNAME=$(@F:.test=)" \
2525	"COVERAGE=$(COVERAGE)" \
2526	"ARB_PID=$(ARB_PID)_$(@F)" \
2527	runtest; \
2528	echo "fake[1]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"; \
2529	$(TEST_POST_CLEAN) \
2530	) >$(TEST_LOG_DIR)/$(@F).log 2>&1; \
2531	UNIT_TESTER/log_result.pl $(TEST_LOG_DIR)/$(@F).log )
2532
2533
2534	test_base: $(UNIT_TESTER_LIB:.a=.dummy) $(subst .test,.dummy,$(TEST_SANDBOXES))
2535
2536	clean_cov:
2537	find . \( -name ".gcda" -o -name ".gcov" -o -name "*.cov" \) -exec rm {} \;
2538
2539	clean_cov_all: clean_cov
2540	find . \( -name "*.gcno" \) -exec rm {} \;
2541
2542	run_tests: test_base clean_cov
2543	$(MAKE) "ARB_PID=UT_$$$$" run_tests_faked_arbpid
2544
2545	cleanup_faked_arbpids:
2546	@rm ~/.arb_tmp/tmp/arb_pids_${USER}_${ARB_PID}_* \|\| true
2547
2548	cleanup_faked_arbpids_and_fail: cleanup_faked_arbpids
2549	@false
2550
2551	run_tests_faked_arbpid:
2552	+@$(TEST_RUN_SUITE) init
2553	@echo "fake[2]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"
2554	$(MAKE) $(TEST_MAKE_FLAGS) $(NODIR) $(TESTED_UNITS) \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2555	@echo "fake[2]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"
2556	+@$(TEST_RUN_SUITE) cleanup \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2557	@$(MAKE) clean_cov >/dev/null
2558	@$(MAKE) cleanup_faked_arbpids
2559
2560	ut:
2561	ifeq ($(UNIT_TESTS),1)
2562	@echo $(MAKE) run_tests
2563	@$(MAKE) run_tests
2564	else
2565	@echo "Not compiled with unit tests"
2566	endif
2567
2568
2569	aut:
2570	+@$(TEST_RUN_SUITE) unskip
2571	$(MAKE) ut
2572
2573	# --------------------------------------------------------------------------------
2574
2575	TIMELOG=$(ARBHOME)/arb_time.log
2576	TIMEARGS=--append --output=$(TIMELOG) --format=" %E(%S+%U) %P [%C]"
2577	TIMECMD=$(TIME) $(TIMEARGS)
2578
2579	time_one:
2580	ifeq ($(ONE_TIMED_TARGET),)
2581	@echo "Error: You have to pass ONE_TIMED_TARGET to $@"
2582	false
2583	else
2584	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET)"
2585	@$(TIMECMD) $(MAKE) $(ONE_TIMED_TARGET)
2586	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET) [done]"
2587	endif
2588
2589	timed_target:
2590	ifeq ($(TIMED_TARGET),)
2591	@echo "Error: You have to pass TIMED_TARGET to $@"
2592	false
2593	else
2594	@echo "Build time:" > $(TIMELOG)
2595	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2596	@cat $(TIMELOG)
2597	@rm $(TIMELOG)
2598	endif
2599
2600	timed_target_tested:
2601	ifeq ($(TIMED_TARGET),)
2602	@echo "Error: You have to pass TIMED_TARGET to $@"
2603	false
2604	else
2605	@echo "Build time:" > $(TIMELOG)
2606	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2607	$(MAKE) "ONE_TIMED_TARGET=ut" time_one
2608	@cat $(TIMELOG)
2609	@rm $(TIMELOG)
2610	endif
2611
2612	clean_timed_target:
2613	ifeq ($(TIMED_TARGET),)
2614	@echo "Error: You have to pass TIMED_TARGET to $@"
2615	false
2616	else
2617	@echo "Build time:" > $(TIMELOG)
2618	$(MAKE) "ONE_TIMED_TARGET=clean" time_one
2619	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2620	@cat $(TIMELOG)
2621	@rm $(TIMELOG)
2622	endif
2623
2624	# --------------------------------------------------------------------------------
2625
2626	CHECKOUT_MODIFIED=0# set to 1 to temporarily skip test for modifications (do not check in if set to 1)
2627
2628	check_svn_does_not_contain_generated:
2629	ifeq ($(CHECKOUT_MODIFIED),0)
2630	@echo "Testing that build does not modify files in SVN"
2631	@test 0 = `svn status \| wc -l` \|\| ( \
2632	echo "The checkout is not/no longer clean:"; \
2633	svn status; \
2634	echo "- if this fails instantly, your checkout is not clean"; \
2635	echo "- if this fails after other targets, these targets modify checked in data"; \
2636	echo " (a common cause may be that depends are not up to date)"; \
2637	false)
2638	else
2639	grep -Hn 'CHECKOUT_MODIFIED' Makefile
2640	endif
2641
2642	check_svn_ignores_generated:
2643	@test 0 = `svn status \| grep '^\?' \| wc -l` \|\| ( \
2644	echo "There are svn-unignored files:"; \
2645	svn status \| grep '^\?'; \
2646	echo "(all generated files should be svn-ignored)"; \
2647	false)
2648
2649	check_svn_state: check_svn_does_not_contain_generated
2650	$(MAKE) check_svn_ignores_generated
2651	$(MAKE) savetest
2652
2653	things_that_always_should_work: depends proto
2654
2655	post_commit_check:
2656	@echo "---------------------------------------- [Initial]"
2657	$(MAKE) check_svn_state
2658
2659	$(MAKE) clean
2660	@echo "---------------------------------------- [After 'make clean']"
2661	$(MAKE) check_svn_state
2662
2663	$(MAKE) things_that_always_should_work
2664	@echo "---------------------------------------- [After 'make things_that_always_should_work']"
2665	$(MAKE) check_svn_state
2666
2667	$(MAKE) all
2668	@echo "---------------------------------------- [After 'make all']"
2669	$(MAKE) check_svn_state
2670
2671	$(MAKE) things_that_always_should_work
2672	@echo "---------------------------------------- [Final]"
2673	$(MAKE) check_svn_state
2674
2675	# --------------------------------------------------------------------------------
2676	# sanitize arb_ntree; also works for clients (arb_edit4, ...) started from there.
2677
2678	sanitize: all
2679	( \
2680	export "LSAN_OPTIONS=max_leaks=30:suppressions=$(ARBHOME)/SOURCE_TOOLS/arb.leaksan.supp"; \
2681	echo "sake[1]: Entering directory \`$(ARBHOME)'"; \
2682	$(ARBHOME)/bin/arb_ntree --execute _logged ~/data/test.arb 2>&1 ; \
2683	echo "sake[1]: Leaving directory \`$(ARBHOME)'" \
2684	) \| $(ARBHOME)/SOURCE_TOOLS/asan2msg.pl
2685
2686	# --------------------------------------------------------------------------------
2687	# build and test one unit:
2688
2689	make_oneunit:
2690	$(MAKE) "WITHPERL=1" $(UNIT).dummy
2691
2692	oneunit:
2693	ifndef UNIT
2694	@echo "Please define UNIT, e.g. using"
2695	@echo " make \"UNIT=ARBDB/libARBDB\" oneunit"
2696	@echo " make \"UNIT=SL/TREEDISP/TREEDISP\" oneunit"
2697	@echo "(Note: 1st is a shared library, 2nd isn't)"
2698	false
2699	else
2700	@echo "Build time" > $(TIMELOG)
2701	@echo "$(SEP) $(MAKE) make_oneunit"
2702	@$(TIMECMD) $(MAKE) make_oneunit
2703	ifeq ($(UNIT_TESTS),1)
2704	@echo $(MAKE) run_tests
2705	@$(TIMECMD) $(MAKE) run_tests
2706	endif
2707	@cat $(TIMELOG)
2708	@rm $(TIMELOG)
2709	endif
2710
2711	# --------------------------------------------------------------------------------
2712
2713	build: arb
2714	$(MAKE) check_bin_dep preplib compile_compatibility
2715
2716	all:
2717	@echo "Build time" > $(TIMELOG)
2718	@echo "$(SEP) $(MAKE) build"
2719	@$(TIMECMD) $(MAKE) build
2720	@echo $(SEP)
2721	@echo "made 'all' with success."
2722	@echo "to start arb enter 'arb'"
2723	ifeq ($(UNIT_TESTS),1)
2724	@echo $(MAKE) run_tests
2725	@$(TIMECMD) $(MAKE) run_tests
2726	endif
2727	@echo "$(SEP) $(MAKE) build [done]"
2728	ifeq ($(DEBUG),1)
2729	@$(MAKE) save_test_no_error >/dev/null # just show hints
2730	endif
2731	@cat $(TIMELOG)
2732	@rm $(TIMELOG)
2733

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