source: tags/ms_r17q3/UNIT_TESTER/run/distance/matrix.pro.phylipComp.expected

Last change on this file was 12957, checked in by westram, 10 years ago
  • adds test for distance matrix
    • calculates matrices for
      • all sequence types
      • using 3 different transformations
        • autodetected for dna and pro
        • DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
    • save matrices in all available formats
    • covers all DIST-code-locations marked in [12942] (calculation using user-defined transformation-matrix remains untested)
  • few minor fixes
    • param constness
    • free/delete mismatch
    • useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
File size: 546 bytes
Line 
1    10
2CytLyti6   
3TaxOcell   13.039183
4BctFra12   13.722404 13.891241
5StrRamo3   9.494329 13.501276 11.684754
6StrCoel9   7.679027 14.456464 11.100773 0.001980
7MucRacem   8.905186 15.567069 9.294234 3.037525 4.651091
8MucRace2   5.396298 12.723294 13.160208 7.260428 7.787954 6.807329
9MucRace3   12.311868 15.382844 8.729351 2.689118 3.427921 0.267170 5.928221
10AbdGlauc   9.829233 5.513000 9.107596 1.841539 2.670608 0.132865 4.738637 0.126518
11CddAlbic   9.833849 14.580181 10.509287 2.235643 3.033804 0.113207 6.343831 0.107114 0.000000
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