|
Last change
on this file was
12957,
checked in by westram, 10 years ago
|
- adds test for distance matrix
- calculates matrices for
- all sequence types
- using 3 different transformations
- autodetected for dna and pro
- DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
- save matrices in all available formats
- covers all DIST-code-locations marked in [12942] (calculation using
 -defined transformation-matrix remains untested)
- few minor fixes
- param constness
- free/delete mismatch
- useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
|
|
File size:
3.3 KB
|
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| 1 | C C C C C C |
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| 2 | o o u l l y |
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| 3 | r r r o o t |
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| 4 | A G C B B A |
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| 5 | q l i u u q |
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| 6 | u u t t t u |
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| 7 | a t r y y a |
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| 8 | t a e r 2 t |
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| 9 | , , , , , , |
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| 10 | |
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| 11 | C C C C C C |
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| 12 | O O U L L Y |
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| 13 | R R R O O T |
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| 14 | Y Y T S S O |
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| 15 | N N O T T P |
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| 16 | E E B R R H |
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| 17 | B B A I I A |
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| 18 | A A C D D G |
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| 19 | C C T I I A |
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| 20 | T T E U U |
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| 21 | E E R M M A |
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| 22 | R R I Q |
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| 23 | I I U B B U |
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| 24 | U U M U U A |
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| 25 | M M T T T |
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| 26 | C Y Y I |
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| 27 | A G I R R L |
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| 28 | Q L T I I I |
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| 29 | U U R C C S |
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| 30 | A T E U U , |
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| 31 | T A U M M |
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| 32 | I M M , , 6 |
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| 33 | C I , |
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| 34 | U C 1 2 |
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| 35 | M U 5 |
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| 36 | , M |
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| 37 | , |
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| 38 | 4 |
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| 39 | 3 |
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| 40 | |
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| 41 | CorAquat, CORYNEBACTERIUM AQUATICUM, 4 -0 46.7 7.4 40.0 40.0 51.0 |
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| 42 | CorGluta, CORYNEBACTERIUM GLUTAMICUM, 3 46.7 -0 48.1 30.2 30.2 32.6 |
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| 43 | CurCitre, CURTOBACTERIUM CITREUM, 5 7.4 48.1 -0 34.9 34.9 46.7 |
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| 44 | CloButyr, CLOSTRIDIUM BUTYRICUM, 1 40.0 30.2 34.9 -0 -0.0 24.7 |
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| 45 | |
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| 46 | CloButy2, CLOSTRIDIUM BUTYRICUM, 2 40.0 30.2 34.9 -0.0 -0 24.7 |
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| 47 | CytAquat, CYTOPHAGA AQUATILIS, 6 51.0 32.6 46.7 24.7 24.7 -0 |
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| 48 | |
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| 49 | Minimum: -0.000000 |
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| 50 | Maximum: 51.045558 |
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| 51 | Average: 27.345362 |
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