source: tags/ms_r17q3/UNIT_TESTER/run/distance/matrix.rna.tabbed.expected

Last change on this file was 12957, checked in by westram, 10 years ago
  • adds test for distance matrix
    • calculates matrices for
      • all sequence types
      • using 3 different transformations
        • autodetected for dna and pro
        • DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
    • save matrices in all available formats
    • covers all DIST-code-locations marked in [12942] (calculation using user-defined transformation-matrix remains untested)
  • few minor fixes
    • param constness
    • free/delete mismatch
    • useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
File size: 675 bytes
Line 
1        CorAquat, CORYNEBACTERIUM AQUATICUM, 4  CorGluta, CORYNEBACTERIUM GLUTAMICUM, 3 CurCitre, CURTOBACTERIUM CITREUM, 5     CloButyr, CLOSTRIDIUM BUTYRICUM, 1      CloButy2, CLOSTRIDIUM BUTYRICUM, 2      CytAquat, CYTOPHAGA AQUATILIS, 6
2CorAquat, CORYNEBACTERIUM AQUATICUM, 4    -0    46,7     7,4    40,0    40,0    51,0
3CorGluta, CORYNEBACTERIUM GLUTAMICUM, 3 46,7      -0    48,1    30,2    30,2    32,6
4CurCitre, CURTOBACTERIUM CITREUM, 5      7,4    48,1      -0    34,9    34,9    46,7
5CloButyr, CLOSTRIDIUM BUTYRICUM, 1      40,0    30,2    34,9      -0    -0,0    24,7
6CloButy2, CLOSTRIDIUM BUTYRICUM, 2      40,0    30,2    34,9    -0,0      -0    24,7
7CytAquat, CYTOPHAGA AQUATILIS, 6        51,0    32,6    46,7    24,7    24,7      -0
8
9Minimum:        -0.000000
10Maximum:        51.045558
11Average:        27.345362
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