source: tags/ms_r17q3/UNIT_TESTER/run/tools/dnarates.inp

Last change on this file was 7156, checked in by westram, 13 years ago
  • added unit tests for mosts tools in TOOLS. Tests do not try to test complete functionality - they only check that one or a few calls to the tools do not fail.
File size: 3.8 KB
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1       8      406  M T U L F
2M 5
3T 2.0
4PseAerug   UCAACGAU-G A-GGGAGCUC UCCU--GAUU CCCCAAUCGC UGAUAUUGUC
5PseFlave   ??CACGUU-G A-GGGAGCUC UCCC--UAUU CCCCAAUCGC UAUUAUCGUU
6HlmHalod   ??CCCGGAAC G-GGAAGCUC UUCCA-GGUC GCCAAAUCAC CGGUAUUCUG
7VibFurni   ??NACGGCGC GUGAACCUCG GGGAUUGGGC GCCCGAAUGC CUGAUUUCAU
8VibVulni   ??NACGGCGC AAAGAAACUU UUCUCGGGGC GCCCGAAUGC CUGAUUUCAU
9VibChole   ??NACGGCGC AAAGGAACUU UCCUUGGGGC GCCCGAAUGC CGGUAAUCAU
10AcnPleur   AUAAUAGUAC GAGGGAGCUC UUUCUUCGAC GUCUGAUCGG UUAUGAUUAC
11PrtVulga   AUAACGGUAC AGGAAAGCUC UUUCUUCGAC GCUAGGUCGC CGAUAAUUAC
12
13CGCGGGCAAC GUCCUGAGGA GGGAUCCAUC ACUAUCNGAG UGGUCCUGGA CUAGGACGAC
14UCGGAACAAC GUUUUACGGA GAGACCUGUU GCUAAUAGAG UGGUCUUGGA UCAGGACGAU
15GGCUCAGAAC GUCCUACGGA GAGAUCUAUU GCUAUCGGAG UUGCCUUGAC UCAACGCGGU
16UGCGAUGAGA UAGCUUCGCU CGGACCUGUC UCGUCAGAUG CGGUGCUGAG UCAGGACCGU
17UGCGAUGAGA UAGCUUCGCU CGGACCUGUC UCGUCAGAUG CGGUGCUGAG UCAGGACCGU
18UGCGAUGAAA CCUCGCAAAG CAGACCUGUU GCUACCGAUG CGGUGCUGAG UCAGGACCGU
19GGCUGUAGAA UAUCUAUGAU UGUACUUGAC CUCAUAAGAG CAGUGGUUAA UGACGAUCGU
20UGCGGUGAGA CGUCUACGAC CAGCUCUAUU GCUAUCGGAA CUAUGCAGAU UCUGAAUCGU
21
22UUUAUAGCAG CUGUCCACAA AUGGGGGCGU AAGUUCCUUG CUGUUUUGUC AUUCGAGUCG
23UUUAUAGCAG CUGUCCACAA AUGGGGGCGU AAGCGCCUUG CUGUUUUGUC AUCUAGAUCG
24UCCGCGGCAG CUGCUCGCAC AUGAAUCCCG GGGCCCCUCC GAGGGAGACC AGCNGGAUCG
25UCUAUACCCG GUACCCGUAC ACUGGGGGUA UCGUUGCGGU AUUCUUUGUG GGCCGGGUCA
26UCUAUACCCG GUGCCCGCAC AUUGGGUGUA GUGUUGCACU AUCAUUUGUG AGCCGGGUCA
27UCUAUACCCG GUACCCGUAC AUGGGGUGUU AAGUUCCUUA AUCAUUUGUC AGCCGGAUCA
28CCUAUACGGC GAACCCGUUC GUCGGGUACA AAUUUGAUUU GGUAAUUGUA AGCCGGGAGA
29UCUGCACCCG GUACCAGUAC ACGGGGUGUA AAGUUCCUUU AUCAAUUGUC GGCCGGAUCA
30
31CUUUUCAGCA UUGAUCGCCG CUCCNAAACU GAGACGGUAG GUGUCUUAGA CAGUGAACCA
32CUUUUUGUUA UUGAGCGCCG CUCCAAAGGC AAGACGGUAG GUGUCUUAGA CAGUGAACCA
33CUCCGUGAUC CCAUGCGCCG CACCGGAGUC ACGGCAGGAG AAACCGUAGA UAGUGGUUCA
34UCUUUUGUUA UCAAGGGCCC UUUUGAAGGC AGGACUGUAG GGAUAGGCUA UGGUGGCCCA
35UCUUUUGUUA UCAAGGGCCC CUUUGAAGGC AGAACUGUAG GGAUAGGCUA UGGUGGCCCA
36UCUUUUGUUA UCAAGUGCCA UCUUGAAGAC AAGACUGUAG GGAUAGGCUA UGGUGGCCCA
37CCCUUGAUUA UGAAGCGUCG UUUUCAUGGU CAAACUUUGA GGACACGGUG UGAAAGCCUG
38CCCUCAAUUA UCAAGCAUUG UUCUGAAGGU UGGCUUGUAG GGACACGGUG UGGUGGCCCA
39
40CUGAUAGGGG CAGCAGCCUG GAUCUGAGAU CUAGUGGCCC CGAGCCGAGG CGCUGACUUU
41CUGAUAGGGG CAACAGCCUG AAUCUGAGAU UUAGUGGCCC CAUGUCGAGG CGCUGACUUU
42CUGACGGGGU CAGCAGCCUG GGUCUGUGAC CUUGUGGCAU CGAGCCGUAC UCGUGCCUUG
43CAGAUACGAG CAUCUGGAGU UGGCUGAGCC GGGCUUUCGC CGUGAUAUAC UCCAGACUUA
44CAGAUACGAG UAUCUGGAGU UGGCUGAGCC GGGCUUUCGC CGUGAUAUAC UCCAGAUCUA
45CAGAUACGAG CAUCUGGAGU UGCCAGAGGC GGGCUUUCGC CGUGAUAUAC UCCAGAUCUA
46AAUGUGCUGG UCGUUGGGAU GGCUUA-AGU CGGUGCCCAC UGAACCGUAC UCCAUGUCUU
47CAAAGGCGGG UAGUUAGAGU UGGUUGAACU GGGCUUCUGC CGUACCGUAC UCCAGCUCCU
48
49CCAUGGAUUG AUCAGCUCGU UGUAGAACCU CGGGUCUACU AUGCNUCGGA GUUGCCGGUG
50CCAUGGAUUG AUCAGCUCGU UGUAGAACGU UAUGUAUACU AUGCCUCGGA GUUGCCGGUG
51UGAUCACUUG AGCACGCUAU CACAUGGAUU CGGUCAUGCU GAAGUCCGGA GUUAUCGAUG
52GCAUGCUUUG AUCUGGUUAC UAUGUGGAGU AAUUCACGUC AUAGUCGCAG GCACUUAAGU
53GCGCGCUGGA AUCUGGUUAC UAUGUGGAGU AAUUCACGUC AUAGUCGCAG GCGCUUAAGU
54GCGCGCUGGA GUCUGGUUAC UAUGUGACGU AAUGUACGUC AUAGUCGUAG GCAACCGGUG
55AUAUACGAGA ACAUGGUUAC UAUUGGGAUU AGGUCAAAUU AUAGUCGUAG GAAAUGCAUG
56UUAUAGAGGA AGCUGGUUAC UAUUGGGCUA AUGGCAAAUU AUAGUCAGAA AAACUCGAGC
57
58GUAUCAACCG AGUCCGGUGA UCAGUCUCCU ACUCGCAAGA GUAGGAGAA? ??????
59GUAUCAACCG AGUCCGGUGA UCAGUCACCU ACUCUUCGGA GUAGGUGAAG CGCGC?
60UUAUCGGCCG GUCCGCGUAG CUAACCACCU GUCCUUCGAG ACAGGUGGAG CGCGC?
61GGAUCAGUGC GGUUGCAUGG CCAGCCAAAC AGUUUUCGAA CUGUUUGGAG GCGCCU
62GGAUCAGUGC GGUUGCAUGG CCAGCCAAAU GGUUUUCGAA CCAUUUGGAG GCGCCU
63GGAUUAGUAC GGUUGCACAA UUGGCCAAAC AGUUUUCGAA CUGUUUGGAG GCGCCU
64GAAUUAGUAC GUAUGCACAA UUGGUUACCU AACUGAAAGG UUAGGUAAGA CGCGUA
65AGGAUAGUCU GGUUGCAUAG CUAGUCAAAU AGCUUUCGAG CUAUUUGAAA CGCGUA
661
67(((( 'VibFurni' :0.02952, 'VibVulni' :0.01880):0.04015, 'VibChole' :0.03760):0.04610,( 'AcnPleur' :0.12011, 'PrtVulga' :0.06756):0.01732):1.00000, 'HlmHalod' :1.00000,( 'PseAerug' :0.04692, 'PseFlave' :0.03498):1.00000);
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