|
Last change
on this file was
11080,
checked in by westram, 11 years ago
|
- merge (10844 10845) from 'aci' into 'trunk':
- adds:
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.3 KB
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| Line | |
|---|
| 1 | ID , |
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| 2 | T=U ! Replace all T's by U's, :T=U:t=u |
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| 3 | A. BBB ! Replace first word by its first letter plus '.', :?* *=?1. *2 |
|---|
| 4 | AA. BBB ! Replace first word by its first two letters plus '.', :??* *=?1?2. *2 |
|---|
| 5 | SHOW a-b ! Show position 125 - 150, |mid(125,150) |
|---|
| 6 | HEAD 20 ! Show position 0 - 20, |head(20) |
|---|
| 7 | TAIL 20 ! Show 20 last positions, |tail(20) |
|---|
| 8 | CNT(A) ! Count all 'A's, |count(aA) |
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| 9 | CNT(ACGT) ! Count all 'ACGTU', |count("ACGTU") |
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| 10 | CNT ambi ! Count all small letters + ambiguous codes + '.', |len("-ACGTU") |
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| 11 | CNT ambi2 ! Count ambiguous c. + 'acgtu.' in range [100..len-100], |mid(100,-99)|len("-ACGTU") |
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| 12 | G+C ! G+C content, |count("gcGC");count("agctuAGCTU")|per_cent |
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| 13 | CHECKALL ! Overall Checksum, |checksum |
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| 14 | CHECKBAS ! Checksum (no gaps), |checksum(exclude=.-n;touppper) |
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| 15 | DIFFECOLI ! Difference to ecoli sequence, |diff(SAI=ECOLI) |
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| 16 | TAXONOMY ! Taxonomy of species, |taxonomy(1) |
|---|
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