| Line | |
|---|
| 1 | /*ARBDB ASCII*/ |
|---|
| 2 | species_data %% (% |
|---|
| 3 | species :5000 %$ (% |
|---|
| 4 | name :7600 "LcbReu40" |
|---|
| 5 | ali_16s %% (% |
|---|
| 6 | data :7000 "---------AGAGTTTGATNNTGGCTCAGGATGAACGCCGGCGGTGTGCCTAATACATGCAAGTCGTACGCAC---TGGCCCAACTGATTGATGGTGCTT----GCACCTGATTGACGATGGAT--CACCAGTGAGTGGCGGACGGGTGAGTAACACGTAGGTAACCTGCCCCGGAGCGGGGGATAACATTTGGAAACAGATGCTAATACCGCATA--ACAACAAAAGCCGCATGGCTTTTGTTTGAAAGATGGC----TTTG---GCTATCACTCTGGGATGGACCTGCGGTGCATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGATGATGCATAGCCGAGTTGAGAGACTGATCGGCCACAATGGAACTGAGACACGGTCCATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGCAAGCCTGATGGAGCAACGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAGCTCTGTTGTTGGAGAAGAACGTGCGTGAGAGTAAC-TGTTCNCGCAGTGACGGTATCCAACCAGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTGCTTAGGTCTGATGTGAAAGCCTTCGGCTTAACCGAAGAAGTG-CATCGGAAACCGGGCGACTTGAGTGCAGAAGAGGACAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTGTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGT--TTCC--GCCCTTCAGTGCCGGAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCTACGCG-AAGAACCTTACCAGGTCTTGACATC-TTGCGCTAACCTTAGAGATAAGGCGTTN-CCTTCGGG-GACGCAATGACAGGTGGTGCATGGTCGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCTGCAACGAGCGCAACCCTTGTTACTAGTTGCCAGCAT-TAAG--TTGGGCACTCTAGTGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAGATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAACGAGTCGCAAGCTCGCGAGAGTAAGCTAATCTCTTAAAGCCGTTCTCAGTTCGGACTGTAGGCTGCAACTCGCCTACACGAAGTCGGAATCGCTAGTAATCGCGGATCAGC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTTGTAACGCCCAAAGTCGGTGGCCTAACCT---TTA--TGGAGGGAGCCGCCTAAGGCGGGACAGATGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAGCCTGCGGCTGGATCACCTCCTTTNT..." |
|---|
| 7 | %) /*ali_16s*/ |
|---|
| 8 | |
|---|
| 9 | acc "X76328" |
|---|
| 10 | full_name :4400 "Lactobacillus reuteri" |
|---|
| 11 | ARB_color %i 1 |
|---|
| 12 | %) /*species*/ |
|---|
| 13 | |
|---|
| 14 | species :5000 %$ (% |
|---|
| 15 | name :7600 "LcbFruct" |
|---|
| 16 | ali_16s %% (% |
|---|
| 17 | data :7000 "---------AGAGTTTGATNNTGGCTCAGGACGAACGCTGGCGGCATGCCTAATACATGCAAGTCGAACGAGC--TGCGCCTAAT-GATAGTTGATGCTT----GCATTAGCTTGACTTAAGT---TAGCAGCGAGTGGCGAACTGGTGAGTAACACGTGGATAACCTGCCCAGAAGAAGGGGATAACACCTGGAAACAGATGCTAATACCGTATA--ACAACGAAAACCACATGGTTTTCGTTTGAAAGATGGC--C-TTT--GTGCTATCGCTTTTGGATGGATCCGCGGCGCATTAGCTAGTTGGTGAGATAAAGGCTCACCAAGGCAATGATGCGTAGCCGACCTGAGAGGGTAATCGGCCACATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGAAAGTCTGATGGAGCAATGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAACTCTGTTGTTAGAGAAGAACGGGCGTGAGAGTAAC-TGCTCACGTCGCGACGGTATCTAACCAGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAACGCTTCGGCTTAACCGGAGAAGTG-CATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGGCTGTCTAGTCTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGT--TTCC--GCCCTTCAGTGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCTACGCG-AAGAACCTTACCAGGACTTGACATC-TTCTGCCAATCTAAGAGATTAGACGTTC--CTTCGGG-GACAGAATGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTGCCAGCAT-TAAG--TTGGGCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAACGAGTTGCGAAACCGCGAGGTCAAGCTAATCTCTTAAAGCCGTTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGC-ATGCCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTTGTAACACCCAAAGTCGGTTAGGTAACC----TTTT--GGAGCCTGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTNT..." |
|---|
| 18 | %) /*ali_16s*/ |
|---|
| 19 | |
|---|
| 20 | acc "X76330" |
|---|
| 21 | full_name :4400 "Lactobacillus fructivorans" |
|---|
| 22 | ARB_color %i 1 |
|---|
| 23 | %) /*species*/ |
|---|
| 24 | |
|---|
| 25 | %) /*species_data*/ |
|---|
| 26 | |
|---|
| 27 | presets %% (% |
|---|
| 28 | alignment %% (% |
|---|
| 29 | alignment_name "ali_16s" |
|---|
| 30 | alignment_len %i 1620 |
|---|
| 31 | aligned %i 1 |
|---|
| 32 | alignment_write_security %i 5 |
|---|
| 33 | alignment_type "rna" |
|---|
| 34 | alignment_rem "" |
|---|
| 35 | auto_format %i 0 |
|---|
| 36 | %) /*alignment*/ |
|---|
| 37 | |
|---|
| 38 | use "ali_16s" |
|---|
| 39 | %) /*presets*/ |
|---|
| 40 | |
|---|
| 41 | tree_data %% (% |
|---|
| 42 | tree_nuc %% (% |
|---|
| 43 | tree "N0.0852719,0.227623;N0.367857,0.313293;N0.029517,0.0188004;LVibFurni\ALVibVulni\AN0.0510114,0.0544815;LChlPneum\ALChlTrach\AN0.107012,0.113298;N0.00980829,0.016696;N0.00709849,0.00886525;LStaHaemo\ALStaHomin\ALStaAureu\AN0.0191693,0.0139991;N0.0318443,0.0503311;LLcbFruct\ALLcbSanfr\AN0.0918728,0.0379919;LLcbA1923\AN0.0318443,0.0300752;LLcbPont2\ALLcbReu40\A" |
|---|
| 44 | nnodes %i 11 |
|---|
| 45 | |
|---|
| 46 | security %i 0 |
|---|
| 47 | remark "Complete sequences. Tree extracted from \ntree_1\n[created as copy of 'tree_demo']\n[created as copy of 'tree_demo2']" |
|---|
| 48 | node %% (% |
|---|
| 49 | id %i 7 |
|---|
| 50 | group_name "group1" |
|---|
| 51 | %) /*node*/ |
|---|
| 52 | |
|---|
| 53 | node %% (% |
|---|
| 54 | id %i 2 |
|---|
| 55 | group_name "inner" |
|---|
| 56 | %) /*node*/ |
|---|
| 57 | |
|---|
| 58 | node %% (% |
|---|
| 59 | id %i 1 |
|---|
| 60 | group_name "big" |
|---|
| 61 | %) /*node*/ |
|---|
| 62 | |
|---|
| 63 | node %% (% |
|---|
| 64 | id %i 0 |
|---|
| 65 | group_name "top" |
|---|
| 66 | %) /*node*/ |
|---|
| 67 | |
|---|
| 68 | node %% (% |
|---|
| 69 | id %i 4 |
|---|
| 70 | group_name "lower-red" |
|---|
| 71 | %) /*node*/ |
|---|
| 72 | |
|---|
| 73 | %) /*tree_nuc*/ |
|---|
| 74 | |
|---|
| 75 | %) /*tree_data*/ |
|---|
| 76 | |
|---|
| 77 | description "User text" |
|---|
| 78 | focus %% (% |
|---|
| 79 | tree_name "tree_nuc" |
|---|
| 80 | configuration "err" |
|---|
| 81 | %) /*focus*/ |
|---|
| 82 | |
|---|
| 83 | |
|---|
| 84 | genom_db %i 0 |
|---|
| 85 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
