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Last change on this file was 17342, checked in by westram, 6 years ago
reintegrates 'group' into 'trunk' implements #780 adds: log:branches/group@17162:17190,17261:17341
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 78.7 KB

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1	# =============================================================== #
2	# #
3	# File : Makefile #
4	# #
5	# Institute of Microbiology (Technical University Munich) #
6	# http://www.arb-home.de/ #
7	# #
8	# =============================================================== #
9
10	# -----------------------------------------------------
11	# The ARB Makefile is aware of the following defines:
12	#
13	# CC C compiler (should be defined by OS)
14	# CXX C++ compiler (should be defined by OS)
15	#
16	# BUILDHOST_64=0/1 1=>compile on 64 bit platform (defaults to ARB_64)
17	# DEVELOPER=name special compilation (values: ANY,RELEASE,your name)
18	# OPENGL=0/1 whether OPENGL is available
19	#
20	# -----------------------------------------------------
21	# Paths for several libraries may be set from config.makefile by using:
22	#
23	# export XLIBS=$(shell pkg-config --libs xpm xerces-c)
24	# export XINCLUDES=$(shell pkg-config --cflags x11)
25	# export XAW_LIBS=$(shell pkg-config --libs xaw7)
26	# export XML_INCLUDES=$(shell pkg-config --cflags xerces-c)
27	#
28	# You make have to explicitely point pkg-config to the *.pc files needed.
29	# For example, Xquartz X11 libraries on macos can be located by adding
30	# the following line before those given above:
31	#
32	# export PKG_CONFIG_PATH=/usr/X11/lib/pkgconfig
33	#
34	# -----------------------------------------------------
35	# ARB Makefile and ARB source code are aware of the following defines:
36	#
37	# $(MACH) name of the machine (LINUX or DARWIN; see config.makefile)
38	# DEBUG compiles the DEBUG sections
39	# DEBUG_GRAPHICS all X-graphics are flushed immediately (for debugging)
40	# ARB_64=0/1 1=>compile 64 bit version
41	# UNIT_TESTS=0/1 1=>compile in unit tests and call them after build
42	# COVERAGE=0/1/2 compile in gcov support (useful together with UNIT_TESTS=1)
43	# 0=no, 1+2=compile in, 1=show
44	# STABS=0/1 force stabs format? (0 = "use default format")
45	# SANITIZE=0/#/all use Sanitizer? (defaults to 0,
46	# 1=AddressSanitizer+LeakSanitizer,
47	# 2=UndefinedBehaviorSanitizer,
48	# combine bit-values to activate multiple Sanitizers,
49	# specify 'all' to activate all)
50	# SHOWTODO=0/1 activate TODO-warnings? (defaults to 0, except for ralf)
51	#
52	# -----------------------------------------------------
53	# The ARB source code is aware of the following defines:
54	#
55	# NDEBUG doesn't compile the DEBUG sections
56	# DEVEL_$(DEVELOPER) developer-dependent flag (enables you to have private sections in code)
57	# DEVELOPER='ANY' (default setting) will be ignored
58	# configurable in config.makefile
59	#
60	# -----------------------------------------------------
61	# Read configuration
62	include config.makefile
63
64	# set defaults for variables commented out in config.makefile:
65	ifndef DARWIN
66	DARWIN:=0
67	endif
68	ifndef LINUX
69	LINUX:=0
70	endif
71	ifndef DEBIAN
72	DEBIAN:=0
73	endif
74	ifndef REDHAT
75	REDHAT:=0
76	endif
77	ifndef ARB_64
78	ARB_64=1#default to 64bit
79	endif
80
81	# compiler settings:
82	ifneq ($(CC),use__A_CC__instead_of__CC)
83	A_CC:=$(CC)# compile C
84	A_CXX:=$(CXX)# compile C++
85
86	# uncomment to ensure no submakefile uses CC and CXX directly
87	override CC:=use__A_CC__instead_of__CC
88	override CXX:=use__A_CXX__instead_of__CXX
89	endif
90
91	export CC CXX A_CC A_CXX
92
93	# unconditionally prepend $(ARBHOME)/lib to LD_LIBRARY_PATH if not found
94	ifeq ($(findstring $(ARBHOME)/lib,$(LD_LIBRARY_PATH)),)
95	LD_LIBRARY_PATH:=${ARBHOME}/lib:$(LD_LIBRARY_PATH)
96	endif
97
98	# store LD_LIBRARY_PATH to circumvent SIP restrictions:
99	ARBBUILD_LIBRARY_PATH:=$(LD_LIBRARY_PATH)
100
101	FORCEMASK = umask 002
102	NODIR=--no-print-directory
103
104	SED:=$(ARBHOME)/SH/arb_sed
105	READLINK:=$(ARBHOME)/SH/arb_readlink
106
107	# ---------------------- compiler version detection
108
109	# supported gcc versions:
110	ALLOWED_gcc_VERSIONS=\
111	4.4.3 4.4.5 4.4.6 4.4.7 \
112	4.5.2 \
113	4.6.1 4.6.2 4.6.3 4.6.4 \
114	4.7.1 4.7.2 4.7.3 4.7.4 \
115	4.8.0 4.8.1 4.8.2 4.8.3 4.8.4 4.8.5 \
116	4.9.0 4.9.1 4.9.2 4.9.3 4.9.4 \
117	5.1.0 5.2.0 5.3.0 5.3.1 5.4.0 5.5.0 \
118	6.1.0 6.2.0 6.3.0 6.4.0 \
119	7.1.0 7.2.0 7.3.0 \
120	8.1.0 8.2.0 \
121
122	# ----------------------
123
124	COMPILER_INFO:=$(shell SOURCE_TOOLS/arb_compiler_version.pl $(A_CXX))
125	COMPILER_NAME:=$(word 1,$(COMPILER_INFO))
126	COMPILER_VERSION:=$(word 2,$(COMPILER_INFO))
127
128	USE_CLANG:=0
129	ifneq ($(COMPILER_NAME),gcc)
130	ifeq ($(COMPILER_NAME),clang)
131	USE_CLANG:=1
132	else
133	ifeq ($(COMPILER_VERSION),4.6.4)
134	# gcc version 4.6.4 segfaults when dumping symbols for detection (silently accept as gcc)
135	COMPILER_NAME:=gcc
136	else
137	$(error failed to detect COMPILER_NAME (got '$(COMPILER_NAME)', expected 'clang' or 'gcc'))
138	endif
139	endif
140	endif
141
142	ifeq ($(USE_CLANG),1)
143	# accept all clang versions:
144	ALLOWED_COMPILER_VERSIONS=$(COMPILER_VERSION)
145	else
146	ALLOWED_COMPILER_VERSIONS=$(ALLOWED_gcc_VERSIONS)
147	endif
148
149	COMPILER_VERSION_ALLOWED=$(strip $(subst ___,,$(foreach version,$(ALLOWED_COMPILER_VERSIONS),$(findstring ___$(version)___,___$(COMPILER_VERSION)___))))
150
151	#---------------------- split gcc version
152
153	SPLITTED_VERSION:=$(subst ., ,$(COMPILER_VERSION))
154
155	USE_GCC_MAJOR:=$(word 1,$(SPLITTED_VERSION))
156	USE_GCC_MINOR:=$(word 2,$(SPLITTED_VERSION))
157	USE_GCC_PATCHLEVEL:=$(word 3,$(SPLITTED_VERSION))
158
159	USE_GCC_452_OR_HIGHER:=
160	USE_GCC_46_OR_HIGHER:=
161	USE_GCC_47_OR_HIGHER:=
162	USE_GCC_48_OR_HIGHER:=
163	USE_GCC_49_OR_HIGHER:=
164	USE_GCC_50_OR_HIGHER:=
165	USE_GCC_60_OR_HIGHER:=
166	USE_GCC_70_OR_HIGHER:=
167	USE_GCC_80_OR_HIGHER:=
168
169	ifeq ($(USE_CLANG),0)
170	ifeq ($(USE_GCC_MAJOR),4)
171	ifeq ($(USE_GCC_MINOR),5)
172	ifneq ('$(findstring $(USE_GCC_PATCHLEVEL),23456789)','')
173	USE_GCC_452_OR_HIGHER:=yes
174	endif
175	else
176	ifneq ('$(findstring $(USE_GCC_MINOR),6789)','')
177	USE_GCC_452_OR_HIGHER:=yes
178	USE_GCC_46_OR_HIGHER:=yes
179	ifneq ($(USE_GCC_MINOR),6)
180	USE_GCC_47_OR_HIGHER:=yes
181	ifneq ($(USE_GCC_MINOR),7)
182	USE_GCC_48_OR_HIGHER:=yes
183	ifneq ($(USE_GCC_MINOR),8)
184	USE_GCC_49_OR_HIGHER:=yes
185	endif
186	endif
187	endif
188	endif
189	endif
190	else
191	# gcc 5.x or higher
192	USE_GCC_452_OR_HIGHER:=yes
193	USE_GCC_46_OR_HIGHER:=yes
194	USE_GCC_47_OR_HIGHER:=yes
195	USE_GCC_48_OR_HIGHER:=yes
196	USE_GCC_49_OR_HIGHER:=yes
197	USE_GCC_50_OR_HIGHER:=yes
198	ifneq ($(USE_GCC_MAJOR),5)
199	# gcc 6.x or higher
200	USE_GCC_60_OR_HIGHER:=yes
201	ifneq ($(USE_GCC_MAJOR),6)
202	# gcc 7.x or higher
203	USE_GCC_70_OR_HIGHER:=yes
204	ifneq ($(USE_GCC_MAJOR),7)
205	# gcc 8.x or higher
206	USE_GCC_80_OR_HIGHER:=yes
207	endif
208	endif
209	endif
210	endif
211	endif
212
213	#---------------------- define special directories for non standard builds
214
215	ifeq ($(DARWIN),1)
216	OSX_FW:=/System/Library/Frameworks
217	OSX_FW_OPENGL:=$(OSX_FW)/OpenGL.framework/Versions/A/Libraries
218	OSX_FW_GLUT:=$(OSX_FW)/GLUT.framework/Versions/A/Libraries
219	OSX_FW_IMAGEIO:=$(OSX_FW)/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources
220	endif
221
222	#---------------------- SSE vectorization
223	# for details about vectorization checks see SOURCE_TOOLS/vectorize.README
224
225	DISABLE_VECTORIZE_CHECK:=0# set to 1 to completely disable vectorization checks
226	TRACE_MISSED_VECTORIZATIONS:=0# set to 1 to activate detailed output about failed vectorizations
227	# (does also show details about successful vectorized loops, which are not optimal)
228
229	#----------------------
230
231	ifeq ($(DARWIN),1)
232	LINK_STATIC=1# link static
233	else
234	LINK_STATIC=0# link dynamically
235	# LINK_STATIC=1# link static (testing only)
236	endif
237
238	shared_cflags :=# flags for shared lib compilation
239	clflags :=# linker flags (when passed through gcc)
240	extended_warnings :=# warning flags for C and C++-compiler
241	extended_cpp_warnings :=# warning flags for C++-compiler only
242
243	ifeq ($(DEBUG),0)
244	dflags := -DNDEBUG# defines
245	ifeq ($(USE_CLANG),1)
246	cflags := -O3# compiler flags (C and C++)
247	else
248	clflags += -Wl,-O2# passthrough linker flags
249	# ------- standard optimization:
250	cflags := -O3# compiler flags (C and C++)
251	# ------- test changed optimization (DISABLE_VECTORIZE_CHECK for -O2 or lower):
252	# cflags := -O2# do not commit uncommented!
253	# DISABLE_VECTORIZE_CHECK:=1
254	endif
255	endif
256
257	ifeq ($(DEBIAN),1)
258	clflags += -Wl,-rpath=/usr/lib/arb/lib -Wl,-z,relro
259	endif
260
261	ifeq ($(DEBUG),1)
262	dflags := -DDEBUG
263
264	gdb_common := -g -g3 -ggdb -ggdb3
265
266	DBGOPTI:=-O0
267	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
268	DBGOPTI:=-Og
269	endif
270
271	ifeq ($(STABS),1)
272	cflags := $(DBGOPTI) $(gdb_common) -gstabs+ # using stabs+ (enable this for bigger debug session: debugs inlines, quick var inspect, BUT valgrind stops working :/)
273	else
274	cflags := $(DBGOPTI) $(gdb_common) # (using dwarf - cant debug inlines here, incredible slow on showing variable content)
275	endif
276
277	# cflags := $(DBGOPTI) $(gdb_common) -gdwarf-3 # (specify explicit dwarf format)
278	# cflags := $(DBGOPTI) $(gdb_common) -gstabs # using stabs (same here IIRC)
279	# cflags := -O2 $(gdb_common) # use this for callgrind (force inlining)
280
281	ifeq ($(DARWIN),0)
282	clflags += -Wl,-g
283	# Note:
284	# Previously '-Wl,-noinhibit-exec' was added to 'clflags' here,
285	# to fix some issues with launchpad binutils (see [12972]).
286	# But that change also caused 'undefined symbols' NOT to be reported as errors
287	# at link time, producing executables that fail at runtime :/
288	endif
289
290	ifeq ($(DEBUG_GRAPHICS),1)
291	dflags += -DDEBUG_GRAPHICS
292	endif
293
294	endif # DEBUG only
295
296	# ------------------------------ POST_COMPILE - control how much you get spammed
297	# (please do not change default in SVN)
298	POST_COMPILE := 2>&1 \| $(ARBHOME)/SOURCE_TOOLS/postcompile.pl
299
300	# POST_COMPILE += --original # dont modify compiler output
301	# POST_COMPILE += --hide-Noncopyable-advices
302	# POST_COMPILE += --show-useless-Weff++
303	# POST_COMPILE += --no-warnings
304	# POST_COMPILE += --only-first-error
305	# POST_COMPILE += --no-warnings --only-first-error
306
307	# POST_COMPILE += --loop-optimization-candi #@@@ seems broken
308	#
309	# always pass used compiler version to postcompile:
310	POST_COMPILE += --compiler=$(COMPILER_VERSION)
311
312	# ------------------------------
313
314	# Enable extra warnings
315	extended_warnings :=
316	extended_cpp_warnings :=
317
318	# C and C++
319	extended_warnings += -Wwrite-strings -Wunused -Wno-aggregate-return -Wshadow
320
321	# C++ only
322	extended_cpp_warnings += -Wnon-virtual-dtor -Wreorder -Wpointer-arith -Wdisabled-optimization -Wmissing-format-attribute
323	extended_cpp_warnings += -Wctor-dtor-privacy
324	# extended_cpp_warnings += -Wfloat-equal
325
326	extended_cpp_warnings += -Wmissing-noreturn
327	# extended_cpp_warnings += -Wold-style-cast# (warns about 28405 old-style casts)
328	extended_cpp_warnings += -Winit-self
329	extended_cpp_warnings += -Wstrict-aliasing
330	extended_cpp_warnings += -Wextra
331
332	# ------- above only warning-options already available in gcc 4.4.3
333
334	# -Weffc++ broken in 4.7.x series
335	# gcc 4.7.3 crashes on GenomeImport.cxx when -Weffc++ is active
336	# (bug reported https://gcc.gnu.org/bugzilla/show_bug.cgi?id=56923; apparently wont be fixed for 4.7-series)
337	# gcc 4.7.4 crashes on DBwriter.cxx when -Weffc++ is active
338	WEFFC_BROKEN:=0
339	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
340	ifneq ('$(USE_GCC_48_OR_HIGHER)','yes')
341	WEFFC_BROKEN:=1
342	endif
343	endif
344	ifeq ('$(WEFFC_BROKEN)','0')
345	extended_cpp_warnings += -Weffc++
346	endif
347
348	# turn off -Wmaybe-uninitialized in debug mode (gets activated with -Wextra). too many bogus warnings
349	ifeq ($(DEBUG),1)
350	ifeq ($(USE_CLANG),0)
351	extended_cpp_warnings += -Wno-maybe-uninitialized
352	endif
353	endif
354
355	ifeq ('$(USE_GCC_452_OR_HIGHER)','yes')
356	extended_cpp_warnings += -Wlogical-op# gcc 4.5.2
357	endif
358	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
359	extended_cpp_warnings += -Wzero-as-null-pointer-constant# gcc 4.7
360	endif
361	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
362	extended_cpp_warnings += -Wunused-local-typedefs# available since gcc 4.7 (but fails for each STATIC_ASSERT, so enable only for Cxx11)
363	endif
364	ifeq ('$(USE_GCC_50_OR_HIGHER)','yes')
365	extended_cpp_warnings += -Wswitch-bool
366	extended_cpp_warnings += -Wlogical-not-parentheses
367	extended_cpp_warnings += -Wsizeof-array-argument
368	extended_cpp_warnings += -Wbool-compare
369
370	ifneq ($(DEVELOPER),RELEASE)
371	# suggest final:
372	extended_cpp_warnings += -Wsuggest-final-types
373	extended_cpp_warnings += -Wsuggest-final-methods
374	dflags += -DSUGGESTS_FINAL
375	endif
376	endif
377	ifeq ('$(USE_GCC_60_OR_HIGHER)','yes')
378	extended_cpp_warnings += -Wduplicated-cond
379	endif
380	ifeq ('$(USE_GCC_80_OR_HIGHER)','yes')
381	extended_cpp_warnings += -Wmultistatement-macros
382	endif
383
384	#---------------------- turn off clang bogus warnings
385
386	ifeq ($(USE_CLANG),1)
387	# -Wmismatched-tags warns about struct/class mismatch in forward declarations (which is explicitely allowed)
388	# -Wchar-subscripts reports too many bogus warnings for "array['x']" (when 'x' is known to be in range [0..128])
389	# -Wunused-private-field report too many false positives (currently ~ 2 of 3)
390	# -Wstring-plus-int warns about common ARB coding practice
391	# -Wgnu-static-float-init warns about accepted GNU extension
392	extended_cpp_warnings += -Wno-mismatched-tags -Wno-char-subscripts -Wno-unused-private-field -Wno-string-plus-int
393	ifeq ('$(COMPILER_VERSION)','4.2.1')
394	# jenkins build (doesn't know switch -Wno-gnu-static-float-init)
395	extended_cpp_warnings += -Wno-gnu
396	else
397	extended_cpp_warnings += -Wno-gnu-static-float-init
398	endif
399	endif
400
401	#---------------------- developer
402
403	ifneq ($(DEVELOPER),ANY) # ANY=default setting (skip all developer specific code)
404	dflags += -DDEVEL_$(DEVELOPER)# activate developer/release specific code
405	endif
406
407	#---------------------- activate TODO warnings?
408
409	ifndef SHOWTODO
410	ifeq ($(DEVELOPER),RALF)
411	SHOWTODO:=1
412	else
413	SHOWTODO:=0
414	endif
415	endif
416	ifeq ($(SHOWTODO),1)
417	dflags += -DWARN_TODO# activate "TODO" warnings
418	endif
419
420	#---------------------- activate threads?
421	# only useful if compiler is able to compile Cxx11 or better
422
423	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
424	# see also ./TEMPLATES/cxxforward.h@USE_Cxx11
425	cflags += -pthread
426	clflags += -pthread
427	endif
428
429	#---------------------- activate Sanitizers?
430
431	ASAN_OPTIONS:=handle_segv=0:color=0
432	ASAN_OPTIONS+=:detect_leaks=1 # comment-out to disable leak-detection
433	ASAN_OPTIONS+=:check_initialization_order=1
434	# ASAN_OPTIONS+=:abort_on_error=1
435
436	# suppressions: SOURCE_TOOLS/arb.leaksan.supp
437	LSAN_OPTIONS:=max_leaks=3:suppressions=$(ARBHOME)/SOURCE_TOOLS/arb.leaksan.supp
438
439
440	ifndef SANITIZE
441	SANITIZE:=0
442	endif
443
444	SANITIZE_ADDRESS:=0
445	SANITIZE_UNDEFINED:=0
446
447	ifneq ($(SANITIZE),0)
448	ifeq ($(SANITIZE),all)
449	SANITIZE:=3
450	endif
451
452	ifeq ($(SANITIZE),1)
453	SANITIZE_ADDRESS:=1
454	else
455	ifeq ($(SANITIZE),2)
456	SANITIZE_UNDEFINED:=1
457	else
458	ifeq ($(SANITIZE),3)
459	SANITIZE_ADDRESS:=1
460	SANITIZE_UNDEFINED:=1
461	else
462	$(error Unknown value '$(SANITIZE)' specified for SANITIZE in config.makefile)
463	endif
464	endif
465	endif
466	endif
467
468	ifeq ($(SANITIZE_ADDRESS),1)
469	ifneq ('$(USE_GCC_48_OR_HIGHER)','yes')
470	$(info AddressSanitizer not usable with gcc $(COMPILER_VERSION) - disabled)
471	SANITIZE_ADDRESS:=0
472	else
473	ifneq ('$(USE_GCC_49_OR_HIGHER)','yes')
474	$(warning note that LeakSanitizer does not work with gcc $(COMPILER_VERSION))
475	endif
476	endif
477	endif
478
479	ifeq ($(SANITIZE_UNDEFINED),1)
480	ifneq ('$(USE_GCC_49_OR_HIGHER)','yes')
481	$(info UndefinedBehaviorSanitizer not usable with gcc $(COMPILER_VERSION) - disabled)
482	SANITIZE_UNDEFINED:=0
483	endif
484	endif
485
486	SANITIZE_ANY:=0
487	ifeq ($(SANITIZE_ADDRESS),1)
488	SANITIZE_ANY:=1
489	endif
490	ifeq ($(SANITIZE_UNDEFINED),1)
491	SANITIZE_ANY:=1
492	endif
493
494	# vectorization fails if sanitizer active where it normally succeeds -> disable check
495	ifeq ($(SANITIZE_ANY),1)
496	DISABLE_VECTORIZE_CHECK:=1
497	endif
498
499	# deactivate some bogus warnings occurring when sanitizing NDEBUG version
500	# (do not disable for future gcc-version >= 8.x -> test again when available)
501	ifeq ($(SANITIZE_ANY),1)
502	ifeq ($(DEBUG),0)
503	ifneq ('$(USE_GCC_80_OR_HIGHER)','yes')
504	extended_cpp_warnings += -Wno-format-overflow
505	extended_cpp_warnings += -Wno-maybe-uninitialized
506	endif
507	endif
508	endif
509
510	#---------------------- 32 or 64 bit
511
512	ifndef BUILDHOST_64
513	BUILDHOST_64:=$(ARB_64)# assume build host is same as version (see config.makefile)
514	endif
515
516	cross_cflags:=
517	cross_lflags:=
518	cross_clflags:=
519
520	ifeq ($(ARB_64),1)
521	dflags += -DARB_64 #-fPIC
522	shared_cflags += -fPIC
523
524	ifeq ($(BUILDHOST_64),1)
525	# build 64-bit ARB version on 64-bit host
526	CROSS_LIB:=# empty = autodetect below
527	ifeq ($(DARWIN),1)
528	cross_cflags += -arch x86_64
529	cross_lflags += -arch x86_64
530	cross_clflags += -arch x86_64
531	endif
532	else
533	# build 64-bit ARB version on 32-bit host
534	CROSS_LIB:=/lib64
535	cross_cflags += -m64
536	cross_lflags += -m64 -m elf_x86_64
537	cross_clflags += -m64 -Wl,-m64,-m,elf_x86_64
538	endif
539	else
540	ifeq ($(BUILDHOST_64),1)
541	# build 32-bit ARB version on 64-bit host
542	CROSS_LIB:=# empty = autodetect below
543	cross_cflags += -m32
544	cross_lflags += -m32 -m elf_i386
545	cross_clflags += -m32 -Wl,-m32,-m,elf_i386
546	else
547	# build 32-bit ARB version on 32-bit host
548	CROSS_LIB:=/lib
549	endif
550	endif
551
552	cflags += $(cross_cflags)
553	clflags += $(cross_clflags)
554
555	ifeq ('$(CROSS_LIB)','')
556	# autodetect libdir
557	ifeq ($(ARB_64),1)
558	CROSS_LIB:=$(shell (test -d /lib64 && echo lib64) \|\| echo lib)
559	else
560	CROSS_LIB:=$(shell (test -d /lib32 && echo lib32) \|\| echo lib)
561	endif
562	endif
563
564	#---------------------- unit tests
565
566	ifndef UNIT_TESTS
567	UNIT_TESTS=0#default is "no tests"
568	endif
569	ifeq ($(UNIT_TESTS),1)
570	dflags += -DUNIT_TESTS
571	UNIT_TESTER_LIB=UNIT_TESTER/UNIT_TESTER.a
572	else
573	UNIT_TESTER_LIB=
574	endif
575
576	#---------------------- use gcov
577
578	ifndef COVERAGE
579	COVERAGE=0#default is "no"
580	endif
581	ifneq ($(COVERAGE),0)
582	GCOV_FLAGS=--coverage
583	else
584	GCOV_FLAGS=
585	endif
586
587	cflags += $(GCOV_FLAGS)
588	clflags += $(GCOV_FLAGS)
589	cross_lflags += $(GCOV_FLAGS)
590
591	#---------------------- other flags
592
593	dflags += -D$(MACH) # define machine
594
595	ifeq ($(DARWIN),1)
596	shared_cflags += -fno-common
597	else
598	dflags += $(shell getconf LFS_CFLAGS)
599	endif
600
601	cflags += -pipe
602	cflags += -fmessage-length=0# don't wrap compiler output
603	cflags += -fshow-column# show columns
604	cflags += -funit-at-a-time
605	cflags += -fPIC
606	cflags += -fno-common# link all global data into one namespace
607	cflags += -fstrict-aliasing# gcc 3.4
608
609
610	ifeq ('$(USE_GCC_48_OR_HIGHER)','yes')
611	cflags += -fno-diagnostics-show-caret#gcc 4.8 (4.7.?)
612	endif
613	#cflags += -save-temps# uncomment to see preprocessor output
614
615	#---------------------- various sanitizers
616	# There are some disabled tests in CORE/arb_misc.cxx@sanitizers
617	# which trigger sanitizer reports.
618
619	ifeq ($(SANITIZE_ANY),1)
620	cflags += -ggdb3 -fno-omit-frame-pointer
621	endif
622
623	# activate AddressSanitizer+LeakSanitizer?
624	ifeq ($(SANITIZE_ADDRESS),1)
625	cflags += -fsanitize=address
626	clflags += -fsanitize=address
627	dflags += -DLEAKS_SANITIZED
628	endif
629
630	# activate UndefinedBehaviorSanitizer?
631	ifeq ($(SANITIZE_UNDEFINED),1)
632	cflags += -fsanitize=undefined
633	clflags += -fsanitize=undefined
634	dflags += -DUNDEF_SANITIZED
635	ifeq ('$(USE_GCC_50_OR_HIGHER)','yes')
636	# abort on runtime errors
637	cflags += -fno-sanitize-recover=all
638	endif
639	#
640	# Note: alignment-sanitizer is deactivated for ARBDB and PROBE!
641	ifeq ('$(DEBUG)','1')
642	ifeq ($(USE_GCC_MAJOR),4)
643	ifeq ($(USE_GCC_MINOR),9)
644	ifneq ('$(findstring $(USE_GCC_PATCHLEVEL),01)','')
645	# workaround https://gcc.gnu.org/bugzilla/show_bug.cgi?id=63531 for 4.9.0 + 4.9.1
646	# (problem is fixed in 4.9.2 release)
647	extended_cpp_warnings:=$(subst -Weffc++,,$(extended_cpp_warnings))
648	endif
649	endif
650	endif
651	endif
652	endif
653
654	#---------------------- X11 location
655
656	ifeq ($(DARWIN),1)
657	XHOME:=$(PREFIX)
658	else
659	ifeq ($(DEBIAN),1)
660	XHOME:=$(PREFIX)
661	else
662	XHOME:=/usr/X11R6
663	endif
664	endif
665
666	XINCLUDES ?= -I$(XHOME)/include
667	XLIBS ?= -L$(XHOME)/$(CROSS_LIB)
668	ifeq ($(DARWIN),1)
669	XINCLUDES += -I$(OSX_FW)/GLUT.framework/Headers -I$(OSX_FW)/OpenGL.framework/Headers -I$(OSX_SDK)/usr/include/krb5
670
671	XLIBS += -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
672	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGL.dylib:$(OSX_FW_OPENGL)/libGL.dylib
673	XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGLU.dylib:$(OSX_FW_OPENGL)/libGLU.dylib
674	else
675	XLIBS += -lXm -lXpm -lXt -lXext -lX11
676	endif
677
678	#---------------------- open GL
679
680	ifeq ($(OPENGL),1)
681	cflags += -DARB_OPENGL # activate OPENGL code
682	GL := gl # this is the name of the OPENGL base target
683	GL_LIB_SYS := -lGL -lGLU
684	GL_LIB_ARB := -L$(ARBHOME)/GL/glAW -lglAW
685
686	ifeq ($(DARWIN),1)
687	GL_LIB_SYS += -lpthread
688	endif
689
690	GL_PNGLIBS_ARB := -L$(ARBHOME)/GL/glpng -lglpng_arb
691	GL_PNGLIBS_SYS := -lpng
692
693	GLEWLIB := -lGLEW -lGLw
694	ifeq ($(DARWIN),1)
695	GLUTLIB := -glut
696	else
697	GLUTLIB := -lglut
698	endif
699
700	GL_LIBS_SYS := $(GL_LIB_SYS) $(GL_PNGLIBS_SYS) $(GLEWLIB) $(GLUTLIB)
701	GL_LIBS_ARB := $(GL_LIB_ARB) $(GL_PNGLIBS_ARB)
702
703	RNA3D_LIB := RNA3D/RNA3D.a
704	else
705	GL_LIBS_ARB:=# no opengl -> no libs
706	GL_LIBS_SYS:=# no opengl -> no libs
707	GL:=# don't build ARB openGL libs
708
709	RNA3D_LIB :=
710	endif
711
712	RNA3D_LIB_4_DEPENDS := RNA3D/RNA3D.a
713
714	GL_LIBS:=$(GL_LIBS_ARB) $(GL_LIBS_SYS)
715
716	#---------------------- tiff lib:
717
718	TIFFLIBS := -ltiff
719
720	#---------------------- XML lib:
721
722	XMLLIBS := -lxerces-c
723
724	#---------------------- glib:
725
726	ARB_NEEDED_GLIB=glib-2.0
727
728	ARB_GLIB_INCLUDE:=$(strip $(shell pkg-config --cflags $(ARB_NEEDED_GLIB)))
729	ARB_GLIB_LIBS:=$(strip $(shell pkg-config --libs $(ARB_NEEDED_GLIB)))
730
731	#---------------------- basic libs:
732
733	SYSLIBS:=
734	ifeq ($(DARWIN),1)
735	SYSLIBS += -lstdc++
736	else
737	SYSLIBS += -lm $(ARB_GLIB_LIBS)
738	endif
739
740	#---------------------- include symbols?
741
742	ifeq ($(TRACESYM),1)
743	ifeq ($(USE_CLANG),0)
744	cflags += -rdynamic
745	clflags += -rdynamic -Wl,--export-dynamic
746	endif
747	endif
748
749	#---------------------- system dependent commands
750
751	ifeq ($(DARWIN),1)
752	TIME:=gtime
753	else
754	TIME:=/usr/bin/time
755	endif
756
757	#---------------------- SSE vectorizer
758	# for details see SOURCE_TOOLS/vectorize.README
759
760	ifeq ($(DEBUG),0)
761	ifeq ($(USE_GCC_49_OR_HIGHER),yes)
762	ifeq ($(DISABLE_VECTORIZE_CHECK),0)
763	# cflags += -fopt-info
764	cflags += -fopt-info-vec
765	ifeq ($(TRACE_MISSED_VECTORIZATIONS),1)
766	# Shows reasons for unsuccessful vectorization:
767	cflags += -fopt-info-vec-missed
768	cflags += -ftree-vectorizer-verbose=10
769	POST_COMPILE += --dump-loop-optimization
770	endif
771	POST_COMPILE += --check-loop-optimization
772	endif
773	else
774	ifeq ($(USE_GCC_48_OR_HIGHER),yes)
775	# no automatic vectorization-check for gcc<4.9.0
776	# -> uncomment the next 2 lines and grep the spam it will produce for 'vectorized.*loops'
777	# cflags += -fopt-info -fopt-info-vec-missed
778	# POST_COMPILE += --original
779	endif
780	endif
781	endif
782
783	#---------------------- stop early on broken flags/compiler combination
784
785	ifeq ($(DEBUG),0)
786	ifeq ($(SANITIZE_ANY),1)
787	ifeq ('$(COMPILER_VERSION)','4.9.1')
788	$(error compiling DEBUG=0 + SANITIZE!=0 crashes with gcc $(COMPILER_VERSION) (gcc 4.9.2 works))
789	endif
790	endif
791	endif
792
793	#---------------------- differences between linking executables and shared libs:
794
795	# executables:
796	ifeq ($(DARWIN),1)
797	blflags:=$(clflags)
798	else
799	blflags:=$(clflags) -Wl,--no-undefined
800	endif
801
802	# shared libraries
803	llflags:=$(clflags)
804
805	# dont use clflags below
806	clflags:=
807
808	# -------------------------------------------------------------------------
809	# Don't put any machine/version/etc conditionals below!
810	# (instead define variables above)
811	# -------------------------------------------------------------------------
812
813	cflags += -W -Wall $(dflags) $(extended_warnings)
814	cxxflags := $(extended_cpp_warnings)
815
816	# add CFLAGS + CPPFLAGS from environment for DEBIAN build
817	ifeq ($(DEBIAN),1)
818	cflags := $(CFLAGS) $(cflags)
819	cxxflags += $(CPPFLAGS)
820	endif
821
822	ifeq ('$(USE_CLANG)','1')
823	# none of the following standards works with clang3.3 (under linux) => dont use standard (as done before r15516)
824	# cxxflags += -std=gnu++11
825	# cxxflags += -std=gnu++0x
826	else
827	ifeq ('$(USE_GCC_60_OR_HIGHER)','yes')
828	cxxflags += -std=gnu++14# see also TEMPLATES/cxxforward.h@USE_Cxx14
829	else
830	ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')
831	cxxflags += -std=gnu++11# see also TEMPLATES/cxxforward.h@USE_Cxx11
832	else
833	# gcc versions between 4.3 (lowest supported) and <4.7
834	cxxflags += -std=gnu++0x
835	endif
836	endif
837	endif
838
839	LINK_STATIC_LIB := ar -csq# link static lib
840	LINK_EXECUTABLE := $(A_CXX) $(blflags) -o# link executable (c++)
841
842	ifeq ($(LINK_STATIC),1)
843	SHARED_LIB_SUFFIX = a# static lib suffix
844	LINK_SHARED_LIB := $(LINK_STATIC_LIB)
845	else
846	SHARED_LIB_SUFFIX = so# shared lib suffix
847	LINK_SHARED_LIB := $(A_CXX) $(llflags) -shared -o# link shared lib
848	endif
849
850	ifeq ($(DARWIN),1)
851	lflags4perl:=
852	else
853	lflags4perl:=$(cross_lflags) -shared
854	endif
855
856	# delete variables unused below
857	blflags:=
858	llflags:=
859
860	# other used tools
861	MAKEDEPEND_PLAIN = makedepend
862	MAKEDEPEND = $(FORCEMASK);$(MAKEDEPEND_PLAIN)
863
864	#SEP:=--------------------------------------------------------------------------------
865	SEP=[`date +%M:%S.%N`] ------------------------------------------------
866	# to analyse timings run
867	# make -j9 clean; make -j9 all \| grep '^\[' \| sort
868	# make -j9 "TIMED_TARGET=perl" clean_timed_target \| grep '^\[' \| sort
869
870	# ------------------------------------------------------------ DYNLIBDEFS
871	# various dynamic library definitions for linking executables:
872	#
873	# SYSLIBS: system libraries needed by database lib
874	# ARBDB_LIB: database lib
875	# DBSYS_LIBS: executable using database (but no GUI)
876	# GUI_LIBS: executable using database and GUI (arb gui uses database)
877	#
878	# Note: definitions exported to sub-makefiles are described in SOURCE_TOOLS/parent_make.txt
879
880	CORE_LIB=-lCORE
881	ARBDB_LIB=-lARBDB $(CORE_LIB)
882	DBSYS_LIBS = $(ARBDB_LIB) $(SYSLIBS)
883
884	GUI_LIBS_PREFIX:=
885	ifeq ($(DARWIN),1)
886	# this seem to be added at wrong place, since opengl is only needed to link EDIT4
887	GUI_LIBS_PREFIX:=-framework GLUT -framework OpenGL
888	endif
889
890	GUI_LIBS=$(GUI_LIBS_PREFIX) $(DBSYS_LIBS) -lAWT -lWINDOW $(XLIBS)
891
892	LIBPATH = -L$(ARBHOME)/lib
893
894	DEST_LIB = lib
895	DEST_BIN = bin
896
897	CC_INCLUDES := -I. -I$(ARBHOME)/INCLUDE $(XINCLUDES) $(ARB_GLIB_INCLUDE)
898	CXX_INCLUDES := $(CC_INCLUDES)
899	MAKEDEPENDFLAGS := -- -DARB_OPENGL -DUNIT_TESTS -D__cplusplus -I. -Y$(ARBHOME)/INCLUDE
900
901	# -------------------------------
902	# old PTSERVER or PTPAN?
903
904	ifeq ($(PTPAN),1)
905	# PTPAN only libs
906	ARCHS_PT_SERVER = \
907	ptpan/PROBE.a
908	else
909	ifeq ($(PTPAN),2)
910	# special mode to compile both servers (developers only!)
911	ARCHS_PT_SERVER = \
912	ptpan/PROBE.a \
913	PROBE/PROBE.a
914	ARCHS_PT_SERVER_LINK = PROBE/PROBE.a# default to old ptserver
915	else
916	# PT-server only libs
917	ARCHS_PT_SERVER = \
918	PROBE/PROBE.a
919	endif
920	endif
921
922	ifndef ARCHS_PT_SERVER_LINK
923	ARCHS_PT_SERVER_LINK = $(ARCHS_PT_SERVER)
924	endif
925
926	# ---------------------------------------
927	# wrap main()
928
929	use_ARB_main=$(ARBHOME)/SOURCE_TOOLS/arb_main_cpp.o
930	use_ARB_main_C=$(ARBHOME)/SOURCE_TOOLS/arb_main_c.o
931
932	# -----------------------------------------
933	# export variables to submakefiles
934
935	include SOURCE_TOOLS/export2sub
936
937	# do not define (exported) variables below this point
938
939	# -------------------------
940	# Main arb targets:
941	# -------------------------
942
943	first_target:
944	$(MAKE) checks
945	@echo $(SEP)
946	@echo 'Main targets:'
947	@echo ''
948	@echo ' all - Compile ARB + TOOLs + and copy shared libs + link foreign software'
949	@echo ' (That is most likely the target you want)'
950	@echo ''
951	@echo ' clean - remove generated files ("SUBDIR/SUBDIR.clean" to clean only SUBDIR)'
952	@echo ' rebuild - clean + all'
953	@echo ' cleanlinked - remove all binaries'
954	@echo ' relink - cleanlinked + all (=relink all from objects)'
955	@echo ''
956	@echo 'Some often used sub targets (make all makes them all):'
957	@echo ''
958	@echo ' arb - Just compile ARB (but none of the integrated tools)'
959	@echo ' menus - create lib/gde/arb.menu from GDEHELP/ARB_GDEmenus.source'
960	@echo ' perl - Compile the PERL XSUBS into lib/ARB.so and create links in lib to perl'
961	@echo ' binlink - Create all links in the bin directory'
962	@echo ''
963	@echo 'Development targets:'
964	@echo ''
965	@echo ' depends - create or update dependencies ("SUBDIR/SUBDIR.depends" to update only SUBDIR)'
966	@echo ' proto - create or update prototypes ("SUBDIR/SUBDIR.proto" to update only SUBDIR)'
967	@echo ' tags - create tags for xemacs'
968	@echo ' show - show available shortcuts (AKA subtargets)'
969	@echo ' up - shortcut for depends+proto+tags'
970	ifeq ($(UNIT_TESTS),1)
971	@echo ' ut - only run tests'
972	@echo ' "UNIT=..." oneunit - build one unit and run tests (see also UNIT_TESTER/Makefile.setup.local)'
973	endif
974	ifneq ($(SANITIZE),0)
975	@echo ' sanitize - all + run arb_ntree with sanitizer (test.arb + execute _logged)'
976	endif
977	@echo ' modified - rebuild files modified in svn checkout (does touch)'
978	@echo ' touch - touch files modified in svn checkout'
979	@echo ''
980	@echo 'Internal maintenance:'
981	@echo ''
982	@echo ' relinfo - show help on release targets'
983	@echo ' tarfile - make rebuild and create arb version tarfile ("tarfile_quick" to skip rebuild)'
984	@echo ' save - save all basic ARB sources into arbsrc_DATE ("savetest" to check filelist)'
985	@echo ' patch - save svn diff to patchfile'
986	@echo ' source_doc - create doxygen documentation'
987	@echo ' relocated - rebuild partly (use when you have relocated ARBHOME)'
988	@echo ' check_res - check resource usage'
989	@echo ' dep_graph - Build dependency graphs'
990	@echo ' clean_cov - Clean coverage results'
991	@echo ''
992	@echo ' clean_opengl_changed - clean after changing OPENGL setting in config.Makefile'
993	@echo ' clean_checked_vect - clean units containing vectorization checks'
994	@echo ''
995	@echo ' post_commit_check - Checks whether'
996	@echo ' * main make targets work,'
997	@echo ' * dependencies and prototypes are up to date,'
998	@echo ' * SVN-controlled files remain unaffected by called targets and'
999	@echo ' * all generated files are ignored.'
1000	@echo ' (has to be called in a clean SVN checkout)'
1001	@echo $(SEP)
1002	@echo ''
1003
1004	relinfo:
1005	@echo ''
1006	@echo $(SEP)
1007	@echo 'Release targets:'
1008	@echo ''
1009	@echo ' inc_candi - increase RC candidate-number (only possible in "rc" branch, not needed for RC1)'
1010	@echo ' inc_patch - increase release patchlevel (only possible in "stable" branch)'
1011	@echo ' inc_minor - increase minor version number (only possible in "trunk")'
1012	@echo ' inc_major - increase MAJOR version number (only possible in "trunk")'
1013	@echo ''
1014	@echo ' show_version - show version tag'
1015	@echo ''
1016	@echo $(SEP)
1017	@echo ''
1018
1019	# auto-generate config.makefile:
1020
1021	CONFIG_MAKEFILE_FOUND=$(wildcard config.makefile)
1022
1023	config.makefile : config.makefile.template
1024	@echo --------------------------------------------------------------------------------
1025	ifeq ($(strip $(CONFIG_MAKEFILE_FOUND)),)
1026	@cp $< $@
1027	@echo '$(ARBHOME)/$@:1: has been generated.'
1028	@echo 'Please edit $@ to configure your system!'
1029	@echo --------------------------------------------------------------------------------
1030	@false
1031	else
1032	@echo '$(ARBHOME)/$<:1: is more recent than'
1033	@echo '$(ARBHOME)/$@:1:'
1034	@ls -al config.makefile*
1035	@echo --------------------------------------------------------------------------------
1036	@echo "Updating $@ (if this fails, check manually)"
1037	SOURCE_TOOLS/update_config_makefile.pl
1038	@echo "Sucessfully updated $@"
1039	@echo --------------------------------------------------------------------------------
1040	@ls -al config.makefile*
1041	@echo --------------------------------------------------------------------------------
1042	@echo "Diff to your old config.makefile:"
1043	@echo --------------------------------------------------------------------------------
1044	-diff $@.bak $@
1045	@echo --------------------------------------------------------------------------------
1046	endif
1047
1048	# check if everything is configured correctly
1049
1050	check_DEVELOPER:
1051	ifndef DEVELOPER
1052	@echo 'config.makefile:1: DEVELOPER not defined'
1053	@false
1054	endif
1055
1056	check_DEBUG:
1057	ifndef dflags
1058	@echo 'config.makefile:1: DEBUG has to be defined. Valid values are 0 and 1'
1059	@false
1060	endif
1061
1062	check_ARB_64:
1063	ifndef ARB_64
1064	@echo 'config.makefile:1: ARB_64 has to be defined. Valid values are 0 and 1'
1065	@false
1066	endif
1067
1068	# ---------------------------------------- check gcc version
1069
1070	COMPILER_BROKEN:=0
1071
1072	ifeq ('$(COMPILER_VERSION_ALLOWED)', '4.6.4')
1073	COMPILER_BROKEN:=1
1074	endif
1075	ifeq ('$(COMPILER_VERSION_ALLOWED)', '4.8.0')
1076	COMPILER_BROKEN:=1
1077	endif
1078
1079	check_same_GCC_VERSION:
1080	$(ARBHOME)/SOURCE_TOOLS/check_same_compiler_version.pl $(COMPILER_NAME) $(COMPILER_VERSION_ALLOWED)
1081
1082	check_GCC_VERSION:
1083	@echo 'Compiler version check:'
1084	# see .@ALLOWED_gcc_VERSIONS
1085	ifeq ('$(COMPILER_VERSION_ALLOWED)', '')
1086	@echo " - Your compiler is '$(COMPILER_NAME)' version '$(COMPILER_VERSION)'"
1087	@echo ' This version is not in the list of supported $(COMPILER_NAME)-versions:'
1088	@$(foreach version,$(ALLOWED_COMPILER_VERSIONS),echo ' * $(version)';)
1089	@echo ' - You may either ..'
1090	@echo ' - add your version to ALLOWED_$(COMPILER_NAME)_VERSIONS in the Makefile and try it out or'
1091	@echo ' - switch to one of the allowed versions (see arb_README_gcc.txt for installing'
1092	@echo ' a different version of gcc)'
1093	$(error Unsupported compiler '$(COMPILER_NAME)' version '$(COMPILER_VERSION)')
1094	else
1095	ifeq ($(COMPILER_BROKEN),1)
1096	$(error compilation refused for $(COMPILER_NAME) version '$(COMPILER_VERSION_ALLOWED)'. Refer to http://bugs.arb-home.de/wiki/GccVersionInfo for details.)
1097	else
1098	@echo " - Supported $(COMPILER_NAME) version '$(COMPILER_VERSION_ALLOWED)' detected - fine!"
1099	@echo ''
1100	ifeq ($(USE_CLANG),1)
1101	@echo "Dump clang version:"
1102	$(A_CXX) -v
1103	endif
1104	$(MAKE) check_same_GCC_VERSION
1105	endif
1106	endif
1107
1108	#---------------------- check ARBHOME
1109
1110	# use arb_INSTALL.txt to determine whether ARBHOME points to correct directory
1111	ARB_INSTALL_FOUND=$(wildcard $(ARBHOME)/arb_INSTALL.txt)
1112
1113	check_ARBHOME:
1114	ifeq ($(strip $(ARB_INSTALL_FOUND)),)
1115	@echo ------------------------------------------------------------
1116	@echo "ARBHOME is set to '$(ARBHOME)'"
1117	@echo "The environment variable ARBHOME has to point to the top arb source directory."
1118	@echo "If you use bash enter:"
1119	@echo " export ARBHOME='`pwd`'"
1120	@echo ------------------------------------------------------------
1121	@false
1122	endif
1123
1124	ARB_PATH_SET=$(findstring $(ARBHOME)/bin,$(PATH))
1125
1126	check_PATH: check_ARBHOME
1127	ifeq ($(strip $(ARB_PATH_SET)),)
1128	@echo ------------------------------------------------------------
1129	@echo "The environment variable PATH has to contain $(ARBHOME)/bin"
1130	@echo "If you use bash enter:"
1131	@echo ' export PATH=$$ARBHOME/bin:$$PATH'
1132	@echo ------------------------------------------------------------
1133	@false
1134	endif
1135
1136	check_TOOLS:
1137	@util/arb_check_build_env.pl \
1138	"$(A_CC)" \
1139	"$(A_CXX)" \
1140	"$(MAKEDEPEND_PLAIN)" \
1141	"$(LINK_SHARED_LIB)" \
1142	"$(LINK_SHARED_LIB)" \
1143
1144	check_ENVIRONMENT : check_PATH check_TOOLS
1145	@echo "-------------------- Environment [start]"
1146	@echo "ARBHOME='$(ARBHOME)'"
1147	@echo "PATH='$(PATH)'"
1148	@echo "LD_LIBRARY_PATH='$(LD_LIBRARY_PATH)'"
1149	@echo "-------------------- Environment [end]"
1150
1151	check_tabs: check_setup
1152	ifeq ($(DEBUG),1)
1153	@SOURCE_TOOLS/tabBrake.pl
1154	endif
1155
1156	force_tab_check:
1157	@touch -t 198001010000 SOURCE_TOOLS/stamp.tabBrake
1158	@$(MAKE) check_tabs
1159
1160
1161	# ---------------------
1162
1163	check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
1164	@echo Your setup seems to be ok.
1165
1166	checks: check_setup check_tabs
1167	@rm -f SOURCE_TOOLS/postcompile.sav
1168
1169
1170	# end test section ------------------------------
1171
1172	# ---------------------------------------
1173	# List of standard top level directories
1174	#
1175	# sub-makefiles have to define the targets
1176	# - 'depends' and
1177	# - 'clean'
1178	#
1179	# when adding new libs here, also add a dependency vs 'links' or 'links_non_perl' in .@DD_links_non_perl
1180
1181	ARCHS = \
1182	$(ARCHS_PT_SERVER) \
1183	AISC/AISC.a \
1184	AISC_MKPTPS/AISC_MKPTPS.a \
1185	ARBDB/libARBDB.a \
1186	CORE/libCORE.a \
1187	ARB_GDE/ARB_GDE.a \
1188	AWT/libAWT.a \
1189	AWTC/AWTC.a \
1190	AWTI/AWTI.a \
1191	CONSENSUS_TREE/CONSENSUS_TREE.a \
1192	CONVERTALN/CONVERTALN.a \
1193	DBSERVER/DBSERVER.a \
1194	DIST/DIST.a \
1195	EDIT4/EDIT4.a \
1196	EISPACK/EISPACK.a \
1197	GDE/GDE.a \
1198	GENOM/GENOM.a \
1199	GENOM_IMPORT/GENOM_IMPORT.a \
1200	GL/GL.a \
1201	ISLAND_HOPPING/ISLAND_HOPPING.a \
1202	MERGE/MERGE.a \
1203	MULTI_PROBE/MULTI_PROBE.a \
1204	NALIGNER/NALIGNER.a \
1205	NAMES/NAMES.a \
1206	NAMES_COM/server.a \
1207	NTREE/NTREE.a \
1208	PARSIMONY/PARSIMONY.a \
1209	PERLTOOLS/PERLTOOLS.a \
1210	PHYLO/PHYLO.a \
1211	PRIMER_DESIGN/PRIMER_DESIGN.a \
1212	PROBE_COM/server.a \
1213	PROBE_DESIGN/PROBE_DESIGN.a \
1214	PROBE_SET/PROBE_SET.a \
1215	READSEQ/READSEQ.a \
1216	RNA3D/RNA3D.a \
1217	RNACMA/RNACMA.a \
1218	SECEDIT/SECEDIT.a \
1219	SEQ_QUALITY/SEQ_QUALITY.a \
1220	SERVERCNTRL/SERVERCNTRL.a \
1221	SL/SL.a \
1222	STAT/STAT.a \
1223	TOOLS/TOOLS.a \
1224	TREEGEN/TREEGEN.a \
1225	UNIT_TESTER/UNIT_TESTER.a \
1226	WETC/WETC.a \
1227	WINDOW/libWINDOW.a \
1228	XML/XML.a \
1229
1230	# -----------------------
1231	# library packets
1232
1233	ARCHS_CLIENT_PROBE = PROBE_COM/client.a
1234	ARCHS_CLIENT_NAMES = NAMES_COM/client.a
1235
1236	ARCHS_MAKEBIN = AISC_MKPTPS/AISC_MKPTPS.a AISC/AISC.a
1237
1238	# communication libs need aisc and aisc_mkpts:
1239
1240	AISC/AISC.dummy: proto_tools
1241
1242	comtools: AISC/AISC.dummy
1243
1244	ARCHS_SEQUENCE = \
1245	SL/SEQUENCE/SEQUENCE.a \
1246	SL/ALIVIEW/ALIVIEW.a \
1247	SL/PRONUC/PRONUC.a \
1248
1249	ARCHS_TREE = \
1250	SL/ARB_TREE/ARB_TREE.a \
1251	SL/FILTER/FILTER.a \
1252	$(ARCHS_SEQUENCE) \
1253
1254	# parsimony tree (used by NTREE, PARSIMONY, STAT(->EDIT4), DIST(obsolete!))
1255	ARCHS_AP_TREE = \
1256	SL/AP_TREE/AP_TREE.a \
1257	$(ARCHS_TREE) \
1258
1259	# --------------------------------------------------------------------------------
1260	# dependencies for linking shared libs
1261
1262	link_core: core
1263	link_db: db link_core
1264	link_aw: aw link_db
1265	link_awt: awt link_aw
1266
1267	#***************************************************************************************
1268	# Individual_Programs_Section
1269	#***************************************************************************************
1270
1271	arbmainwrapper:
1272	$(MAKE) -C SOURCE_TOOLS -r mainwrapper
1273
1274
1275	#********************************* arb_ntree ************************************
1276	NTREE = bin/arb_ntree
1277	ARCHS_NTREE = \
1278	NTREE/NTREE.a \
1279	ARB_GDE/ARB_GDE.a \
1280	SL/GROUP_SEARCH/GROUP_SEARCH.a \
1281	SL/DB_UI/DB_UI.a \
1282	AWTC/AWTC.a \
1283	AWTI/AWTI.a \
1284	CONSENSUS_TREE/CONSENSUS_TREE.a \
1285	GENOM_IMPORT/GENOM_IMPORT.a \
1286	GENOM/GENOM.a \
1287	MERGE/MERGE.a \
1288	MULTI_PROBE/MULTI_PROBE.a \
1289	PRIMER_DESIGN/PRIMER_DESIGN.a \
1290	PROBE_DESIGN/PROBE_DESIGN.a \
1291	SEQ_QUALITY/SEQ_QUALITY.a \
1292	SERVERCNTRL/SERVERCNTRL.a \
1293	SL/ALILINK/ALILINK.a \
1294	SL/AW_NAME/AW_NAME.a \
1295	SL/CONSENSUS/CONSENSUS.a \
1296	SL/DB_SCANNER/DB_SCANNER.a \
1297	SL/DB_QUERY/DB_QUERY.a \
1298	SL/QUERY/QUERY.a \
1299	SL/SEQIO/SEQIO.a \
1300	STAT/STAT.a \
1301	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1302	SL/HELIX/HELIX.a \
1303	SL/REGEXPR/REGEXPR.a \
1304	SL/REFENTRIES/REFENTRIES.a \
1305	SL/NDS/NDS.a \
1306	SL/ITEM_SHADER/ITEM_SHADER.a \
1307	SL/ITEMS/ITEMS.a \
1308	SL/INSDEL/INSDEL.a \
1309	SL/LOCATION/LOCATION.a \
1310	SL/MACROS/MACROS.a \
1311	SL/PVP/PVP.a \
1312	SL/TRANSLATE/TRANSLATE.a \
1313	SL/TREEDISP/TREEDISP.a \
1314	SL/TREE_ADMIN/TREE_ADMIN.a \
1315	SL/TREE_READ/TREE_READ.a \
1316	SL/TREE_WRITE/TREE_WRITE.a \
1317	XML/XML.a \
1318	$(ARCHS_AP_TREE) \
1319
1320	$(NTREE): $(ARCHS_NTREE:.a=.dummy) link_awt
1321	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NTREE) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1322	echo "$(SEP) Link $@"; \
1323	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(XMLLIBS)" ; \
1324	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NTREE) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) $(XMLLIBS) && \
1325	echo "$(SEP) Link $@ [done]"; \
1326	)
1327
1328	#********************************* arb_edit4 ************************************
1329	EDIT4 = bin/arb_edit4
1330
1331	ARCHS_EDIT4 := \
1332	EDIT4/EDIT4.a \
1333	ARB_GDE/ARB_GDE.a \
1334	SL/FAST_ALIGNER/FAST_ALIGNER.a \
1335	AWTC/AWTC.a \
1336	ISLAND_HOPPING/ISLAND_HOPPING.a \
1337	SECEDIT/SECEDIT.a \
1338	SERVERCNTRL/SERVERCNTRL.a \
1339	SL/AW_HELIX/AW_HELIX.a \
1340	SL/AW_NAME/AW_NAME.a \
1341	SL/CONSENSUS/CONSENSUS.a \
1342	SL/ITEMS/ITEMS.a \
1343	STAT/STAT.a \
1344	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1345	SL/HELIX/HELIX.a \
1346	SL/TRANSLATE/TRANSLATE.a \
1347	SL/MACROS/MACROS.a \
1348	SL/NDS/NDS.a \
1349	$(ARCHS_AP_TREE) \
1350	XML/XML.a \
1351
1352	ifeq ($(OPENGL),1)
1353	ARCHS_EDIT4 += RNA3D/RNA3D.a
1354	endif
1355
1356	LIBS_EDIT4 := $(GL_LIBS)
1357
1358	$(EDIT4): $(ARCHS_EDIT4:.a=.dummy) link_awt
1359	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_EDIT4) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1360	echo "$(SEP) Link $@"; \
1361	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4)" ; \
1362	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_EDIT4) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) $(LIBS_EDIT4) && \
1363	echo "$(SEP) Link $@ [done]"; \
1364	)
1365
1366	#********************************* arb_rnacma ************************************
1367	RNACMA = bin/arb_rnacma
1368	ARCHS_RNACMA = \
1369	RNACMA/RNACMA.a \
1370
1371	$(RNACMA) : $(ARCHS_RNACMA:.a=.dummy) link_db
1372	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_RNACMA) \|\| ( \
1373	echo "$(SEP) Link $@"; \
1374	echo "$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(DBSYS_LIBS)"; \
1375	$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_RNACMA) $(DBSYS_LIBS) && \
1376	echo "$(SEP) Link $@ [done]"; \
1377	)
1378
1379	#********************************* arb_wetc ************************************
1380	WETC = bin/arb_wetc
1381	ARCHS_WETC = \
1382	WETC/WETC.a \
1383	SL/HELIX/HELIX.a \
1384	SL/FILTER/FILTER.a \
1385	XML/XML.a \
1386
1387	$(WETC): $(ARCHS_WETC:.a=.dummy) link_awt
1388	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_WETC) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1389	echo "$(SEP) Link $@"; \
1390	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS)" ; \
1391	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_WETC) $(GUI_LIBS) && \
1392	echo "$(SEP) Link $@ [done]"; \
1393	)
1394
1395	#********************************* arb_dist ************************************
1396	DIST = bin/arb_dist
1397	ARCHS_DIST = \
1398	DIST/DIST.a \
1399	CONSENSUS_TREE/CONSENSUS_TREE.a \
1400	EISPACK/EISPACK.a \
1401	SERVERCNTRL/SERVERCNTRL.a \
1402	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1403	SL/HELIX/HELIX.a \
1404	SL/MATRIX/MATRIX.a \
1405	SL/MACROS/MACROS.a \
1406	SL/NDS/NDS.a \
1407	SL/ITEMS/ITEMS.a \
1408	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.a \
1409	XML/XML.a \
1410	$(ARCHS_AP_TREE) \
1411
1412	$(DIST): $(ARCHS_DIST:.a=.dummy) link_awt
1413	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DIST) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1414	echo "$(SEP) Link $@"; \
1415	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS)" ; \
1416	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DIST) $(ARCHS_CLIENT_PROBE) $(GUI_LIBS) && \
1417	echo "$(SEP) Link $@ [done]"; \
1418	)
1419
1420	#********************************* arb_pars ************************************
1421	PARSIMONY = bin/arb_pars
1422	ARCHS_PARSIMONY = \
1423	PARSIMONY/PARSIMONY.a \
1424	SERVERCNTRL/SERVERCNTRL.a \
1425	SL/AW_NAME/AW_NAME.a \
1426	SL/GUI_ALIVIEW/GUI_ALIVIEW.a \
1427	SL/HELIX/HELIX.a \
1428	SL/MACROS/MACROS.a \
1429	SL/NDS/NDS.a \
1430	SL/ITEMS/ITEMS.a \
1431	SL/TRANSLATE/TRANSLATE.a \
1432	SL/TREEDISP/TREEDISP.a \
1433	XML/XML.a \
1434	$(ARCHS_AP_TREE) \
1435
1436	$(PARSIMONY): $(ARCHS_PARSIMONY:.a=.dummy) link_awt
1437	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PARSIMONY) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1438	echo "$(SEP) Link $@"; \
1439	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS)" ; \
1440	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PARSIMONY) $(ARCHS_CLIENT_NAMES) $(GUI_LIBS) && \
1441	echo "$(SEP) Link $@ [done]"; \
1442	)
1443
1444	#********************************* arb_convert_aln ************************************
1445	CONVERT_ALN = bin/arb_convert_aln
1446	ARCHS_CONVERT_ALN = \
1447	CONVERTALN/CONVERTALN.a \
1448
1449	$(CONVERT_ALN) : $(ARCHS_CONVERT_ALN:.a=.dummy) link_db
1450	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_CONVERT_ALN) $(use_ARB_main) \|\| ( \
1451	echo "$(SEP) Link $@"; \
1452	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(DBSYS_LIBS)"; \
1453	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_CONVERT_ALN) $(DBSYS_LIBS) && \
1454	echo "$(SEP) Link $@ [done]"; \
1455	)
1456
1457	#********************************* arb_treegen ************************************
1458
1459	TREEGEN = bin/arb_treegen
1460	ARCHS_TREEGEN = \
1461	TREEGEN/TREEGEN.a \
1462
1463	$(TREEGEN) : $(ARCHS_TREEGEN:.a=.dummy)
1464	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_TREEGEN) $(use_ARB_main_C) \|\| ( \
1465	echo "$(SEP) Link $@"; \
1466	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN)" ; \
1467	$(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $(LIBPATH) $(ARCHS_TREEGEN) && \
1468	echo "$(SEP) Link $@ [done]"; \
1469	)
1470
1471	#********************************* arb_naligner ************************************
1472	NALIGNER = bin/arb_naligner
1473	ARCHS_NALIGNER = \
1474	NALIGNER/NALIGNER.a \
1475	SERVERCNTRL/SERVERCNTRL.a \
1476	SL/HELIX/HELIX.a \
1477
1478	$(NALIGNER): $(ARCHS_NALIGNER:.a=.dummy) link_db
1479	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NALIGNER) $(use_ARB_main) \|\| ( \
1480	echo "$(SEP) Link $@"; \
1481	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(DBSYS_LIBS)" ; \
1482	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NALIGNER) $(ARCHS_CLIENT_PROBE) $(DBSYS_LIBS) && \
1483	echo "$(SEP) Link $@ [done]"; \
1484	)
1485
1486	#********************************* arb_phylo ************************************
1487	PHYLO = bin/arb_phylo
1488	ARCHS_PHYLO = \
1489	PHYLO/PHYLO.a \
1490	SL/HELIX/HELIX.a \
1491	SL/FILTER/FILTER.a \
1492	SL/MACROS/MACROS.a \
1493	XML/XML.a \
1494
1495	$(PHYLO): $(ARCHS_PHYLO:.a=.dummy) link_awt
1496	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PHYLO) $(GUI_LIBS) $(use_ARB_main) \|\| ( \
1497	echo "$(SEP) Link $@"; \
1498	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS)" ; \
1499	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PHYLO) $(GUI_LIBS) && \
1500	echo "$(SEP) Link $@ [done]"; \
1501	)
1502
1503	#***************************************************************************************
1504	# SERVER SECTION
1505	#***************************************************************************************
1506
1507	#********************************* arb_db_server ************************************
1508	DBSERVER = bin/arb_db_server
1509	ARCHS_DBSERVER = \
1510	DBSERVER/DBSERVER.a \
1511	SERVERCNTRL/SERVERCNTRL.a \
1512
1513	$(DBSERVER): $(ARCHS_DBSERVER:.a=.dummy) link_db
1514	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_DBSERVER) $(ARBDB_LIB) $(use_ARB_main) \|\| ( \
1515	echo "$(SEP) Link $@"; \
1516	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS)" ; \
1517	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_DBSERVER) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS) && \
1518	echo "$(SEP) Link $@ [done]"; \
1519	)
1520
1521	#********************************* arb_pt_server ************************************
1522	PROBE = bin/arb_pt_server
1523	ARCHS_PROBE_COMMON = \
1524	SL/PTCLEAN/PTCLEAN.a \
1525	SERVERCNTRL/SERVERCNTRL.a \
1526	SL/HELIX/HELIX.a \
1527
1528	ARCHS_PROBE_LINK = \
1529	$(ARCHS_PT_SERVER_LINK) \
1530	$(ARCHS_PROBE_COMMON) \
1531
1532	ARCHS_PROBE_DEPEND = \
1533	$(ARCHS_PT_SERVER) \
1534	$(ARCHS_PROBE_COMMON) \
1535
1536	$(PROBE): $(ARCHS_PROBE_DEPEND:.a=.dummy) link_db
1537	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_SERVER_PROBE) config.makefile $(use_ARB_main) \|\| ( \
1538	echo "$(SEP) Link $@"; \
1539	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARCHS_CLIENT_PROBE) $(ARBDB_LIB) $(SYSLIBS)" ; \
1540	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARCHS_CLIENT_PROBE) $(ARBDB_LIB) $(SYSLIBS) && \
1541	echo "$(SEP) Link $@ [done]"; \
1542	)
1543
1544	#********************************* arb_name_server ************************************
1545	NAMES = bin/arb_name_server
1546	ARCHS_NAMES = \
1547	NAMES/NAMES.a \
1548	SERVERCNTRL/SERVERCNTRL.a \
1549
1550	$(NAMES): $(ARCHS_NAMES:.a=.dummy) link_db
1551	@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) $(use_ARB_main) \|\| ( \
1552	echo "$(SEP) Link $@"; \
1553	echo "$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS)" ; \
1554	$(LINK_EXECUTABLE) $@ $(use_ARB_main) $(LIBPATH) $(ARCHS_NAMES) $(ARBDB_LIB) $(ARCHS_CLIENT_NAMES) NAMES_COM/server.a $(SYSLIBS) && \
1555	echo "$(SEP) Link $@ [done]"; \
1556	)
1557
1558	#********************************* SHARED LIBRARIES SECTION ************************************
1559
1560	prepare_libdir: addlibs
1561
1562	addlibs:
1563	(perl $(ARBHOME)/SOURCE_TOOLS/provide_libs.pl \
1564	"arbhome=$(ARBHOME)" \
1565	"opengl=$(OPENGL)" \
1566	"link_static=$(LINK_STATIC)" \
1567	)
1568
1569	#***************************************************************************************
1570	# Recursive calls to sub-makefiles
1571	#***************************************************************************************
1572
1573	%.depends:
1574	@cp -p $(@D)/Makefile $(@D)/Makefile.old # save old Makefile
1575	@$(MAKE) -C $(@D) -r \
1576	"AUTODEPENDS=1" \
1577	"MAIN=nothing" \
1578	"cflags=noCflagsHere_use_MAKEDEPENDFLAGS" \
1579	"cxxflags=noCxxflagsHere_use_MAKEDEPENDFLAGS" \
1580	depends
1581	@grep "^# DO NOT DELETE" $(@D)/Makefile >/dev/null
1582	@cat $(@D)/Makefile \
1583	\| SOURCE_TOOLS/fix_depends.pl "(from main)" \
1584	>$(@D)/Makefile.2
1585	@mv $(@D)/Makefile.old $(@D)/Makefile # restore old Makefile
1586	@$(ARBHOME)/SOURCE_TOOLS/mv_if_diff $(@D)/Makefile.2 $(@D)/Makefile # update Makefile if changed
1587
1588	%.proto:
1589	@($(MAKE) -C $(@D) \
1590	"AUTODEPENDS=0" \
1591	"MAIN=nothing" \
1592	"cflags=noCflags" \
1593	"cxxflags=noCxxflags" \
1594	proto 2>&1 ) \| $(ARBHOME)/SOURCE_TOOLS/asan2msg.pl
1595
1596	%.clean:
1597	@$(MAKE) -C $(@D) \
1598	"AUTODEPENDS=0" \
1599	"MAIN=nothing" \
1600	"cflags=noCflags" \
1601	"cxxflags=noCxxflags" \
1602	clean
1603
1604
1605	# stop wrong targets
1606	target_is_missing_lib_prefix:
1607	@echo "Error: Denied to build shared library target with missing 'lib'-prefix"
1608	false
1609
1610	ARBDB/ARBDB.dummy: target_is_missing_lib_prefix
1611	CORE/CORE.dummy: target_is_missing_lib_prefix
1612	AWT/AWT.dummy: target_is_missing_lib_prefix
1613	WINDOW/WINDOW.dummy: target_is_missing_lib_prefix
1614
1615	# rule to generate main target (normally a library):
1616	# @@@ check effect of setting LANG=C below
1617	%.dummy:
1618	@( export ID=$$$$; LANG=C; \
1619	(( \
1620	echo "$(SEP) Make $(@D)"; \
1621	$(MAKE) -C $(@D) -r \
1622	"AUTODEPENDS=1" \
1623	"MAIN=$(@F:.dummy=.a)" \
1624	"cflags=$(cflags) -DIN_ARB_$(subst /,_,$(@D))" \
1625	&& \
1626	echo "$(SEP) Make $(@D) [done]"; \
1627	) >$(@D).$$ID.log 2>&1 && (cat $(@D).$$ID.log;rm $(@D).$$ID.log)) \|\| (cat $(@D).$$ID.log;rm $(@D).$$ID.log;false))
1628
1629	# Additional dependencies for subtargets:
1630
1631	PROBE_COM/PROBE_COM.dummy : comtools
1632	NAMES_COM/NAMES_COM.dummy : comtools
1633
1634	com: PROBE_COM/PROBE_COM.dummy NAMES_COM/NAMES_COM.dummy
1635
1636	PROBE_COM/server.dummy:
1637	@echo Unwanted request to make target $<
1638	false
1639
1640	PROBE_COM/client.dummy:
1641	@echo Unwanted request to make target $<
1642	false
1643
1644	NAMES_COM/server.dummy:
1645	@echo Unwanted request to make target $<
1646	false
1647
1648	NAMES_COM/client.dummy:
1649	@echo Unwanted request to make target $<
1650	false
1651
1652
1653	ARBDB/libARBDB.dummy: links
1654	CORE/libCORE.dummy: links
1655
1656	PERLTOOLS/PERLTOOLS.dummy: core db
1657
1658	# all subdirs perl not depends on go here (ADD_links_non_perl)
1659	AWT/libAWT.dummy: links_non_perl
1660	AWTI/AWTI.dummy: links_non_perl
1661	CONSENSUS_TREE/CONSENSUS_TREE.dummy: links_non_perl
1662	CONVERTALN/CONVERTALN.dummy: links_non_perl
1663	DBSERVER/DBSERVER.dummy: links_non_perl
1664	DIST/DIST.dummy: links_non_perl
1665	EDIT4/EDIT4.dummy: links_non_perl com
1666	EISPACK/EISPACK.dummy: links_non_perl
1667	GDE/GDE.dummy: links_non_perl
1668	GENOM/GENOM.dummy: links_non_perl
1669	GENOM_IMPORT/GENOM_IMPORT.dummy: links_non_perl
1670	ISLAND_HOPPING/ISLAND_HOPPING.dummy: links_non_perl
1671	MERGE/MERGE.dummy: links_non_perl
1672	NTREE/NTREE.dummy: links_non_perl
1673	PARSIMONY/PARSIMONY.dummy: links_non_perl
1674	PHYLO/PHYLO.dummy: links_non_perl
1675	PRIMER_DESIGN/PRIMER_DESIGN.dummy: links_non_perl
1676	PROBE_SET/PROBE_SET.dummy: links_non_perl link_db
1677	READSEQ/READSEQ.dummy: links_non_perl
1678	RNACMA/RNACMA.dummy: links_non_perl header_libs
1679	SECEDIT/SECEDIT.dummy: links_non_perl
1680	SEQ_QUALITY/SEQ_QUALITY.dummy: links_non_perl
1681	SERVERCNTRL/SERVERCNTRL.dummy: links_non_perl com
1682	SL/ALILINK/ALILINK.dummy: links_non_perl
1683	SL/ALIVIEW/ALIVIEW.dummy: links_non_perl
1684	SL/AP_TREE/AP_TREE.dummy: links_non_perl
1685	SL/ARB_TREE/ARB_TREE.dummy: links_non_perl
1686	SL/AW_HELIX/AW_HELIX.dummy: links_non_perl
1687	SL/CONSENSUS/CONSENSUS.dummy: links_non_perl
1688	SL/DB_QUERY/DB_QUERY.dummy: links_non_perl
1689	SL/DB_SCANNER/DB_SCANNER.dummy: links_non_perl
1690	SL/DB_UI/DB_UI.dummy: links_non_perl
1691	SL/FAST_ALIGNER/FAST_ALIGNER.dummy: links_non_perl
1692	SL/FILTER/FILTER.dummy: links_non_perl
1693	SL/FILTSEQEXP/FILTSEQEXP.dummy: links_non_perl
1694	SL/GROUP_SEARCH/GROUP_SEARCH.dummy: links_non_perl
1695	SL/GUI_ALIVIEW/GUI_ALIVIEW.dummy: links_non_perl
1696	SL/HELIX/HELIX.dummy: links_non_perl
1697	SL/INSDEL/INSDEL.dummy: links_non_perl
1698	SL/ITEM_SHADER/ITEM_SHADER.dummy: links_non_perl
1699	SL/ITEMS/ITEMS.dummy: links_non_perl
1700	SL/LOCATION/LOCATION.dummy: links_non_perl
1701	SL/MACROS/MACROS.dummy: links_non_perl
1702	SL/MATRIX/MATRIX.dummy: links_non_perl
1703	SL/NDS/NDS.dummy: links_non_perl
1704	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.dummy: links_non_perl
1705	SL/PRONUC/PRONUC.dummy: links_non_perl
1706	SL/PTCLEAN/PTCLEAN.dummy: links_non_perl link_db
1707	SL/PVP/PVP.dummy: links_non_perl
1708	SL/QUERY/QUERY.dummy: links_non_perl link_db
1709	SL/REFENTRIES/REFENTRIES.dummy: links_non_perl
1710	SL/REGEXPR/REGEXPR.dummy: links_non_perl
1711	SL/SEQIO/SEQIO.dummy: links_non_perl
1712	SL/SEQUENCE/SEQUENCE.dummy: links_non_perl
1713	SL/TRANSLATE/TRANSLATE.dummy: links_non_perl
1714	SL/TREE_ADMIN/TREE_ADMIN.dummy: links_non_perl
1715	SL/TREE_READ/TREE_READ.dummy: links_non_perl
1716	SL/TREE_WRITE/TREE_WRITE.dummy: links_non_perl
1717	SL/TREEDISP/TREEDISP.dummy: links_non_perl
1718	STAT/STAT.dummy: links_non_perl
1719	TREEGEN/TREEGEN.dummy: links_non_perl
1720	WETC/WETC.dummy: links_non_perl
1721	WINDOW/libWINDOW.dummy: links_non_perl
1722	XML/XML.dummy: links_non_perl
1723
1724	ifeq ($(OPENGL),1)
1725	GL/glAW/glAW.dummy: links_non_perl
1726	GL/glpng/glpng.dummy: links_non_perl
1727	GL/GL.dummy: GL/glAW/glAW.dummy GL/glpng/glpng.dummy
1728	RNA3D/RNA3D.dummy: links_non_perl gl
1729	endif
1730
1731	UNIT_TESTER/UNIT_TESTER.dummy: link_db \
1732	SERVERCNTRL/SERVERCNTRL.dummy \
1733
1734	# see also TOOLS/Makefile@TOOLSLIBDEPENDS
1735	TOOLS/TOOLS.dummy : links_non_perl link_db \
1736	CONSENSUS_TREE/CONSENSUS_TREE.dummy \
1737	SERVERCNTRL/SERVERCNTRL.dummy \
1738	SL/FILTER/FILTER.dummy \
1739	SL/FILTSEQEXP/FILTSEQEXP.dummy \
1740	SL/INSDEL/INSDEL.dummy \
1741	SL/REGEXPR/REGEXPR.dummy \
1742	SL/SEQIO/SEQIO.dummy \
1743	SL/TREE_READ/TREE_READ.dummy \
1744	SL/TREE_WRITE/TREE_WRITE.dummy \
1745	XML/XML.dummy \
1746
1747	AWTC/AWTC.dummy : com
1748
1749	NAMES/NAMES.dummy : com
1750	SL/AW_NAME/AW_NAME.dummy : com
1751
1752	PROBE/PROBE.dummy : com
1753	ptpan/PROBE.dummy : com
1754	MULTI_PROBE/MULTI_PROBE.dummy : com
1755	PROBE_DESIGN/PROBE_DESIGN.dummy : com
1756	NALIGNER/NALIGNER.dummy : com
1757
1758	ARB_GDE/ARB_GDE.dummy : proto_tools
1759
1760	compile_compatibility: SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.dummy
1761
1762	#***************************************************************************************
1763	# Short aliases to make targets
1764	#***************************************************************************************
1765
1766	show:
1767	@echo $(SEP)
1768	@echo 'Aliases for often needed targets:'
1769	@echo ''
1770	@echo ' executables:'
1771	@echo ''
1772	@echo ' nt arb_ntree'
1773	@echo ' e4 arb_edit4 (includes secedit)'
1774	@echo ' di arb_dist'
1775	@echo ' ph arb_phylo'
1776	@echo ' pa arb_parsimony'
1777	@echo ' tg arb_treegen'
1778	@echo ' ds arb_dbserver'
1779	@echo ' pt arb_pt_server'
1780	@echo ' na arb_name_server'
1781	@echo ''
1782	@echo ' libraries:'
1783	@echo ''
1784	@echo ' com communication libraries'
1785	@echo ' db ARB database'
1786	@echo ' aw GUI lib'
1787	@echo ' awt GUI toolkit'
1788	@echo ' awtc general purpose library'
1789	@echo ' awti import/export library'
1790	@echo ' mp multi probe library'
1791	@echo ' ge genome library'
1792	@echo ' pd probe design lib'
1793	@echo ' prd primer design lib'
1794	@echo ''
1795	@echo ' other targets:'
1796	@echo ''
1797	@echo ' help recompile help files'
1798	@echo ' tools make small tools used by arb'
1799	@echo ''
1800	@echo ' foreign targets:'
1801	@echo ''
1802	@echo ' gde GDE'
1803	@echo ' agde ARB_GDE'
1804	@echo ''
1805	@echo 'for other targets inspect $(ARBHOME)/Makefile'
1806	@echo ''
1807	@echo $(SEP)
1808
1809	source_doc:
1810	@echo "Remove some links (doxygen crashes otherwise):"
1811	find . \( -name "AISC" -o -name "C" -o -name "GDEHELP" \) -type l -exec rm {} \;
1812	doxygen 2>&1 1>/dev/null
1813	$(MAKE) forcelinks
1814
1815	dep_graph:
1816	@echo "Building some dependency graphs"
1817	SOURCE_TOOLS/dependency_graphs.pl
1818
1819	help: HELP_SOURCE/HELP_SOURCE.dummy
1820
1821	HELP_SOURCE/HELP_SOURCE.dummy: link_core xml menus
1822
1823	db: ARBDB/libARBDB.dummy
1824	core: CORE/libCORE.dummy
1825	aw: WINDOW/libWINDOW.dummy
1826	awt: AWT/libAWT.dummy
1827	awtc: AWTC/AWTC.dummy
1828	awti: AWTI/AWTI.dummy
1829
1830	mp: MULTI_PROBE/MULTI_PROBE.dummy
1831	mg: MERGE/MERGE.dummy
1832	ge: GENOM/GENOM.dummy
1833	prd: PRIMER_DESIGN/PRIMER_DESIGN.dummy
1834
1835	nt: menus $(NTREE)
1836
1837	nal: $(NALIGNER)
1838
1839	di: $(DIST)
1840	ph: $(PHYLO)
1841	pa: $(PARSIMONY)
1842	tg: $(TREEGEN)
1843
1844	ifeq ($(OPENGL),1)
1845	3d: RNA3D/RNA3D.dummy
1846	gl: GL/GL.dummy
1847	else
1848	noopengl:
1849	@echo "invalid target for OPENGL=0"
1850	3d: noopengl
1851	gl: noopengl
1852	endif
1853
1854	SL/SL.dummy: com
1855
1856	ds: $(DBSERVER)
1857	pt: $(PROBE)
1858	pst: PROBE_SET/PROBE_SET.dummy
1859	pd: PROBE_DESIGN/PROBE_DESIGN.dummy
1860	na: $(NAMES)
1861	sq: SEQ_QUALITY/SEQ_QUALITY.dummy
1862	cma: $(RNACMA)
1863
1864	sec: SECEDIT/SECEDIT.dummy
1865
1866	e4: $(EDIT4) readseq menus
1867
1868	gi: GENOM_IMPORT/GENOM_IMPORT.dummy
1869	wetc: $(WETC)
1870
1871	xml: XML/XML.dummy
1872	xmlin: XML_IMPORT/XML_IMPORT.dummy# broken
1873	stat: STAT/STAT.dummy $(NTREE) $(EDIT4)
1874	fa: SL/FAST_ALIGNER/FAST_ALIGNER.dummy
1875
1876	#********************************************************************************
1877
1878	up_by_remake: depends proto vectorize_checks
1879
1880	up: up_by_remake tags valgrind_update
1881
1882	#********************************************************************************
1883
1884	touch:
1885	SOURCE_TOOLS/touch_modified.pl
1886
1887	modified: touch
1888	$(MAKE) all
1889
1890	#********************************************************************************
1891
1892	libdepends:
1893	$(MAKE) -C "SOURCE_TOOLS" \
1894	"RNA3D_LIB=$(RNA3D_LIB_4_DEPENDS)" \
1895	libdepends
1896
1897	#********************************************************************************
1898
1899	# create generated headers:
1900	genheaders: TEMPLATES/TEMPLATES.dummy
1901
1902	clrdotdepends:
1903	rm PROBE_COM/.depends \|\| true
1904	rm NAMES_COM/.depends \|\| true
1905	rm PERL2ARB/.depends \|\| true
1906
1907	comdepends: comtools clrdotdepends
1908	@echo "$(SEP) Partially build com interface"
1909	$(MAKE) PROBE_COM/PROBE_COM.depends NAMES_COM/NAMES_COM.depends
1910	$(MAKE) PROBE_COM/server.depends NAMES_COM/server.depends
1911
1912	depends: genheaders comdepends vectorize_checks
1913	@echo "$(SEP) Updating other dependencies"
1914	$(MAKE) $(subst NAMES_COM/server.depends,,$(subst PROBE_COM/server.depends,,$(ARCHS:.a=.depends))) \
1915	HELP_SOURCE/HELP_SOURCE.depends \
1916	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.depends \
1917
1918	$(MAKE) libdepends
1919
1920	depend: depends
1921
1922	# ------------------------------------------------------------
1923	# dependency generation tests for AISC code
1924	#(all should work w/o creating wrong dependencies;
1925	# neither in XXX_COM/Makefile nor in code using AISC interface)
1926	dependstest1: silent_clean
1927	$(MAKE) depends
1928	dependstest2: silent_clean
1929	$(MAKE) com
1930	dependstest3: silent_clean
1931	$(MAKE) aw
1932	dependstest4: silent_clean
1933	$(MAKE) pt
1934	dependstest5: silent_clean
1935	$(MAKE) na
1936	dependstest6: silent_clean
1937	$(MAKE) nt
1938	dependstest7: silent_clean
1939	$(MAKE) all
1940	# ------------------------------------------------------------
1941
1942	vectorize_checks:
1943	$(MAKE) -C SOURCE_TOOLS -r vectorize_checks
1944
1945	clean_checked_vect: lib/lib.clean
1946	SOURCE_TOOLS/clean_checked_vectorizations.sh
1947
1948	# ------------------------------------------------------------
1949
1950	AISC_MKPTPS/AISC_MKPTPS.dummy: links
1951
1952	proto_tools: AISC_MKPTPS/AISC_MKPTPS.dummy
1953
1954	proto: proto_tools
1955	@echo $(SEP) Updating prototypes
1956	$(MAKE) \
1957	ARBDB/ARBDB.proto \
1958	AISC_COM/AISC_COM.proto \
1959	ARB_GDE/ARB_GDE.proto \
1960	CORE/CORE.proto \
1961	CONVERTALN/CONVERTALN.proto \
1962	NTREE/NTREE.proto \
1963	MERGE/MERGE.proto \
1964	$(ARCHS_PT_SERVER:.a=.proto) \
1965	SERVERCNTRL/SERVERCNTRL.proto \
1966	SL/SL.proto \
1967
1968	#********************************************************************************
1969
1970	valgrind_update: links
1971	@echo $(SEP) Updating for valgrind
1972	$(MAKE) -C SOURCE_TOOLS valgrind_update
1973
1974	#********************************************************************************
1975
1976	TAGFILE=TAGS
1977	TAGFILE_TMP=TAGS.tmp
1978
1979	TAG_SOURCE_HEADERS=TAGS.headers
1980	TAG_SOURCE_CODE=TAGS.codefiles
1981	TAG_SOURCE_LISTS=$(TAG_SOURCE_HEADERS) $(TAG_SOURCE_CODE)
1982
1983	ETAGS_IGNORE_LIST=SOURCE_TOOLS/etags_ignore.lst
1984
1985	ETAGS=ctags -e -I @$(ETAGS_IGNORE_LIST) --sort=no --if0=no --extra=q
1986	ETAGS_TYPES=--C-kinds=cgnsut --C++-kinds=cgnsut
1987	ETAGS_FUN =--C-kinds=fm --C++-kinds=fm
1988	ETAGS_REST =--C-kinds=dev --C++-kinds=dev
1989
1990	FILTER_TAGS_SOURCES= \
1991	$(SED) -e 's/^.\///g' \| \
1992	grep -vi '^HEADERLIBS\\|^GDE/\\|/GEN[CH]/'
1993
1994	$(TAG_SOURCE_HEADERS): links
1995	find . \( -name '.hxx' -o -name ".h" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1996
1997	$(TAG_SOURCE_CODE): links
1998	find . \( -name '.cxx' -o -name ".c" \) -type f \| $(FILTER_TAGS_SOURCES) > $@
1999
2000	TAGS.1.tmp: $(TAG_SOURCE_HEADERS)
2001	$(ETAGS) -f $@ $(ETAGS_TYPES) -L $<
2002	TAGS.2.tmp: $(TAG_SOURCE_HEADERS)
2003	$(ETAGS) -f $@ $(ETAGS_FUN) -L $<
2004	TAGS.3.tmp: $(TAG_SOURCE_HEADERS)
2005	$(ETAGS) -f $@ $(ETAGS_REST) -L $<
2006	TAGS.4.tmp: $(TAG_SOURCE_CODE)
2007	$(ETAGS) -f $@ $(ETAGS_TYPES) -L $<
2008	TAGS.5.tmp: $(TAG_SOURCE_CODE)
2009	$(ETAGS) -f $@ $(ETAGS_FUN) -L $<
2010	TAGS.6.tmp: $(TAG_SOURCE_CODE)
2011	$(ETAGS) -f $@ $(ETAGS_REST) -L $<
2012
2013	TAGS_ALL_PARTS=TAGS.1.tmp TAGS.2.tmp TAGS.3.tmp TAGS.4.tmp TAGS.5.tmp TAGS.6.tmp
2014
2015	$(TAGFILE_TMP) : $(TAGS_ALL_PARTS)
2016	cat $(TAGS_ALL_PARTS) > $@
2017	rm $(TAGS_ALL_PARTS) $(TAG_SOURCE_LISTS)
2018
2019	tags: $(TAGFILE_TMP)
2020	mv_if_diff $(TAGFILE_TMP) $(TAGFILE)
2021
2022	#********************************************************************************
2023
2024	LINKSTAMP=SOURCE_TOOLS/stamp.generate_all_links
2025
2026	links: checks $(LINKSTAMP) arbmainwrapper
2027	links_no_checks: $(LINKSTAMP) arbmainwrapper
2028
2029	forcelinks:
2030	-rm $(LINKSTAMP)
2031	$(MAKE) links
2032
2033	$(LINKSTAMP): SOURCE_TOOLS/generate_all_links.sh genheaders
2034	+SOURCE_TOOLS/generate_all_links.sh
2035	touch $(LINKSTAMP)
2036
2037	clean_links:
2038	# avoid to delete linked pts, nas or arb_tcp.dat:
2039	find . -path './lib' -prune -o -type l -exec rm {} \;
2040	# removed obsolete file - refuses to disappear due to 'prune' above
2041	@rm -f lib/help/GDEHELP
2042	@rm -f $(LINKSTAMP) lib/inputMasks/format.readme
2043
2044	redo_links: clean_links
2045	$(MAKE) links_no_checks
2046
2047	#********************************************************************************
2048
2049	header_libs:
2050	@(( \
2051	echo "$(SEP) Make HEADERLIBS"; \
2052	$(MAKE) -C HEADERLIBS all && \
2053	echo "$(SEP) Make HEADERLIBS [done]"; \
2054	) > HEADERLIBS.log 2>&1 && (cat HEADERLIBS.log;rm HEADERLIBS.log)) \|\| (cat HEADERLIBS.log;rm HEADERLIBS.log;false)
2055
2056	#********************************************************************************
2057
2058	gde: GDE/GDE.dummy
2059	GDE: gde
2060	agde: ARB_GDE/ARB_GDE.dummy
2061	tools: TOOLS/TOOLS.dummy
2062	convert: $(CONVERT_ALN)
2063	readseq: READSEQ/READSEQ.dummy
2064
2065	#***************************************************************************************
2066	# Some user commands
2067	#***************************************************************************************
2068
2069	menus: binlink links
2070	@(( \
2071	echo "$(SEP) Make GDEHELP"; \
2072	$(MAKE) -C GDEHELP -r all && \
2073	echo "$(SEP) Make GDEHELP [done]"; \
2074	) > GDEHELP.log 2>&1 && (cat GDEHELP.log;rm GDEHELP.log)) \|\| (cat GDEHELP.log;rm GDEHELP.log;false)
2075
2076	ifeq ($(DEBUG),1)
2077	BIN_TARGET=develall
2078	else
2079	BIN_TARGET=all
2080	endif
2081
2082
2083	binlink:
2084	$(MAKE) -C bin $(BIN_TARGET)
2085
2086	check_bin_dep: binlink
2087	SOURCE_TOOLS/check_bin_dependencies.pl
2088
2089	preplib:
2090	(cd lib;$(MAKE) all)
2091
2092	# --------------------------------------------------------------------------------
2093	# This section is quite tricky:
2094	#
2095	# make 'perl' is a BIG target, so when it has to be made, it has to be started
2096	# as early as possible to reduce overall compile time. Since 'make' does not
2097	# provide any priotities, i force it to build all 'perl'-prerequisites early, by
2098	# adding artificial dependencies to these prerequisites
2099	#
2100	# That behavior is likely to be system-dependent.
2101	# My goal was only to make it work on my current development system,
2102	# where this saves about 20% of overall build time.
2103
2104	ifeq ($(WITHPERL),1)
2105	links_non_perl: PERLTOOLS/PERLTOOLS.dummy
2106	perltools: links_non_perl
2107	perl: realperl
2108	else
2109	links_non_perl: links
2110	perl:
2111	$(MAKE) "WITHPERL=1" perl
2112	endif
2113
2114	# ---------------------------------------- perl
2115
2116	ifeq ($(ARB_64),$(BUILDHOST_64))
2117	TEST_PERL_SCRIPTS=$(MAKE) -C PERL_SCRIPTS/test test
2118	else
2119	TEST_PERL_SCRIPTS=echo "skipping perl script compilation (when cross-compiling)"
2120	endif
2121
2122	realperl: perltools
2123	(( \
2124	echo "$(SEP) Make PERL2ARB" ; \
2125	$(TIME) $(MAKE) -C PERL2ARB -r -f Makefile.main \
2126	"AUTODEPENDS=1" \
2127	"dflags=$(dflags)" \
2128	"cflags4perl=$(cflags) $(cxxflags) $(dflags)" \
2129	"lflags4perl=$(lflags4perl)" \
2130	"COMPILER_VERSION=$(COMPILER_VERSION)" \
2131	all && \
2132	$(TEST_PERL_SCRIPTS) && \
2133	echo "$(SEP) Make PERL2ARB [done]" ; \
2134	) > PERL2ARB.log 2>&1 && (cat PERL2ARB.log;rm PERL2ARB.log)) \|\| (cat PERL2ARB.log;rm PERL2ARB.log;false)
2135
2136	perl_clean:
2137	@$(MAKE) -C PERL2ARB -r -f Makefile.main \
2138	"AUTODEPENDS=0" \
2139	clean
2140
2141	PERL2ARB/PERL2ARB.clean:
2142	$(MAKE) perl_clean
2143	$(MAKE) -C PERL_SCRIPTS/test clean
2144
2145	# ---------------------------------------- bindings to script languages
2146
2147	bindings: lib/libCORE.so lib/libARBDB.so
2148	$(MAKE) -C BINDINGS all ARBDEPENDS="$(^:%=../%)" DFLAGS="$(dflags)"
2149
2150	bindings_clean:
2151	$(MAKE) -C BINDINGS clean
2152
2153	# ----------------------------------------
2154
2155	CLOC=cloc-1.08.pl
2156	CLOCFLAGS=--no3 --quiet --progress-rate=0
2157	CLOCARB=--exclude-dir=GDE .
2158	CLOCEXT=GDE
2159	CLOCCODE=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.code.def
2160	CLOCREST=--read-lang-def=$(ARBHOME)/SOURCE_TOOLS/arb.cloc.rest.def
2161	CLOCFILT=tail --lines=+4
2162
2163	cloc:
2164	@echo 'Arb code:'
2165	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCARB) \| $(CLOCFILT)
2166	@echo 'Arb rest:'
2167	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCARB) \| $(CLOCFILT)
2168	@echo 'External code:'
2169	@$(CLOC) $(CLOCFLAGS) $(CLOCCODE) $(CLOCEXT) \| $(CLOCFILT)
2170	@echo 'External rest:'
2171	@$(CLOC) $(CLOCFLAGS) $(CLOCREST) $(CLOCEXT) \| $(CLOCFILT)
2172
2173	# ---------------------------------------- check resources
2174
2175	check_res:
2176	$(ARBHOME)/SOURCE_TOOLS/check_resources.pl
2177
2178	# ---------------------------------------- cleaning
2179
2180	rmbak:
2181	@echo "[cleanup backup/core files]"
2182	@find . \( -name '*%' \
2183	-o -name '*.bak' \
2184	-o -name '*~' \) \
2185	-o \( -name 'core' -a \! -type d \) \
2186	-exec rm -v {} \; \|\| \
2187	echo "Warning: target 'rmbak' reported problems when removing misc. backup files (ignored)"
2188	@echo "[cleanup done]"
2189
2190	bin_reinit:
2191	$(MAKE) bin/bin.clean
2192	$(MAKE) -C "bin" all
2193
2194	clean_directories:
2195	-rm -rf \
2196	$(ARBHOME)/PROBE_SET/bin \
2197	$(ARBHOME)/INCLUDE \
2198
2199	libclean:
2200	-find $(ARBHOME) -type f \( -name '*.a' ! -type l \) -exec rm -f {} \;
2201
2202	objclean:
2203	-find $(ARBHOME) -type f \( -name '*.o' ! -type l \) -exec rm -f {} \;
2204
2205	# bin.clean and HELP_SOURCE.clean interfere
2206	clean3:
2207	$(MAKE) bin/bin.clean
2208	$(MAKE) HELP_SOURCE/HELP_SOURCE.clean
2209
2210	clean2: $(ARCHS:.a=.clean) \
2211	clean3 \
2212	rmbak \
2213	libclean \
2214	objclean \
2215	lib/lib.clean \
2216	GDEHELP/GDEHELP.clean \
2217	HEADERLIBS/HEADERLIBS.clean \
2218	SOURCE_TOOLS/SOURCE_TOOLS.clean \
2219	SOURCE_TOOLS/COMPILE_COMPAT/COMPILE_COMPAT.clean \
2220	UNIT_TESTER/UNIT_TESTER.clean \
2221	TEMPLATES/TEMPLATES.clean \
2222	perl_clean \
2223	clean_directories \
2224
2225	rm -f .last_gcc .last_compiler config.makefile.bak
2226
2227	# links are needed for cleanup
2228	clean: redo_links motif_xpm_hack_clean
2229	$(MAKE) clean2
2230	$(MAKE) clean_cov_all clean_links
2231
2232	silent_clean:
2233	$(MAKE) clean >/dev/null
2234
2235	# 'relocated' is about 50% faster than 'rebuild'
2236	reloc_clean: links
2237	@echo "---------------------------------------- Relocation cleanup"
2238	$(MAKE) \
2239	perl_clean \
2240	GDEHELP/GDEHELP.clean \
2241	HELP_SOURCE/genhelp/genhelp.clean \
2242	bin/bin.clean \
2243	libclean \
2244	objclean
2245
2246	relocated: links
2247	$(MAKE) reloc_clean
2248	@echo "---------------------------------------- and remake"
2249	$(MAKE) build
2250
2251	# -----------------------------------
2252	# some stress tests
2253	# (helpful to reveal race conditions with -j)
2254
2255	rebuild4ever: rebuild
2256	$(MAKE) rebuild4ever
2257
2258	build4ever: build
2259	$(MAKE) build4ever
2260
2261	clean4ever: clean
2262	$(MAKE) clean4ever
2263
2264	test4ever: ut
2265	$(MAKE) test4ever
2266
2267	perl4ever: clean
2268	$(MAKE) links
2269	$(MAKE) perl
2270	$(MAKE) perl4ever
2271
2272	help4ever: clean
2273	$(MAKE) help
2274	$(MAKE) help4ever
2275
2276	# -----------------------------------
2277
2278	rebuild: clean
2279	$(MAKE) all
2280
2281	cleanlinked: bin/bin.clean libclean
2282
2283	relink: cleanlinked
2284	$(MAKE) all
2285
2286	tarfile: rebuild
2287	$(MAKE) prepare_libdir
2288	util/arb_compress
2289
2290	tarfile_quick: build
2291	$(MAKE) prepare_libdir
2292	util/arb_compress
2293
2294	save: sourcetarfile
2295
2296	patch:
2297	SOURCE_TOOLS/arb_create_patch.sh arbPatch
2298
2299	# test early whether save will work
2300	savetest:
2301	@util/arb_srclst.pl >/dev/null
2302
2303	testsave: savetest
2304
2305	sourcetarfile: rmbak
2306	util/arb_save
2307
2308	save2: rmbak
2309	util/arb_save ignore
2310
2311	save_test: rmbak
2312	@echo "Testing source list.."
2313	@util/arb_srclst.pl > /dev/null
2314
2315	save_test_no_error:
2316	@-$(MAKE) save_test
2317
2318	inc_candi:
2319	touch SOURCE_TOOLS/inc_candi.stamp
2320	$(MAKE) do_version_update
2321
2322	inc_patch:
2323	touch SOURCE_TOOLS/inc_patch.stamp
2324	$(MAKE) do_version_update
2325
2326	inc_minor:
2327	touch SOURCE_TOOLS/inc_minor.stamp
2328	$(MAKE) do_version_update
2329
2330	inc_major:
2331	touch SOURCE_TOOLS/inc_major.stamp
2332	$(MAKE) do_version_update
2333
2334	do_version_update:
2335	@echo Incrementing version information
2336	$(MAKE) savetest
2337	$(MAKE) genheaders # auto upgrades version early
2338
2339	show_version:
2340	$(MAKE) genheaders # updates version info
2341	@echo "$(SEP) ARB version info"
2342	@grep ARB_VERSION TEMPLATES/arb_build.h
2343	@echo "$(SEP)"
2344
2345	release_quick:
2346	-rm arb.tgz arbsrc.tgz
2347	$(MAKE) tarfile_quick
2348	$(MAKE) sourcetarfile
2349
2350	# --------------------------------------------------------------------------------
2351	# special cleanups
2352
2353	clean_opengl_changed: RNA3D/RNA3D.clean EDIT4/EDIT4.clean WINDOW/WINDOW.clean GL/GL.clean
2354
2355	# --------------------------------------------------------------------------------
2356
2357	MAKE_IF_COMMITTED=$(MAKE) -C SOURCE_TOOLS -f Makefile.commitbuild
2358
2359	build_CTARGET:
2360	+$(MAKE_IF_COMMITTED) "CTARGET=$(CTARGET)" build_CTARGET
2361
2362	reset_committed_build:
2363	+$(MAKE_IF_COMMITTED) reset
2364
2365	# --------------------------------------------------------------------------------
2366
2367	arbapplications: nt pa e4 wetc pt na nal di ph ds wetc cma
2368
2369	arb_external: convert tools gde readseq tg pst xmlin
2370
2371	arb_no_perl: arbapplications help arb_external
2372
2373	arb: motif_xpm_hack
2374	$(MAKE) "WITHPERL=1" perl arb_no_perl
2375
2376	motif_xpm_hack:
2377	$(MAKE) -r -C "lib/motifHack" all
2378
2379	motif_xpm_hack_clean:
2380	$(MAKE) -r -C "lib/motifHack" clean
2381
2382	# --------------------------------------------------------------------------------
2383	# special targets for SOURCE_TOOLS/remake_after_change.pl
2384
2385	rac_arb_dist: di
2386	rac_arb_edit4: e4
2387	rac_arb_ntree: nt
2388	rac_arb_pars: pa
2389	rac_arb_phylo: ph
2390	rac_arb_wetc: wetc
2391	rac_arb_naligner: nal
2392	rac_arb_pt_server: pt
2393	rac_arb_db_server: ds
2394	rac_arb_name_server: na
2395	rac_arb_convert_aln: convert
2396	rac_arb_treegen: tg
2397	rac_arb_rnacma: cma
2398	rac_arb_help2xml: help
2399
2400	rac_arb_a2ps: tools
2401	rac_arb_consensus_tree: tools
2402	rac_arb_dnarates: tools
2403	rac_arb_export_rates: tools
2404	rac_arb_export_tree: tools
2405	rac_arb_gene_probe: tools
2406	rac_arb_message: tools
2407	rac_arb_primer: tools
2408	rac_arb_probe: tools
2409	rac_arb_read_tree: tools
2410
2411	# --------------------------------------------------------------------------------
2412	# unit testing
2413	# @@@ work in progress
2414	#
2415	# goal is to automatically test all libraries/executables using TESTED_UNITS_AUTO
2416	#
2417	# currently not all test executables link w/o error
2418	# (see UNITS_WORKING, UNITS_UNTESTABLE_ATM and UNITS_NEED_FIX)
2419
2420	# define RNA3D/RNA3D.test
2421	RNA3D_TEST := $(subst .a,.test,$(RNA3D_LIB))
2422
2423	TESTED_UNITS_AUTO = $(ARCHS:.a=.test)
2424
2425	UNITS_WORKING = \
2426	$(RNA3D_TEST) \
2427	EISPACK/EISPACK.test \
2428	GENOM/GENOM.test \
2429	GL/glAW/libglAW.test \
2430	GL/glpng/libglpng_arb.test \
2431	ISLAND_HOPPING/ISLAND_HOPPING.test \
2432	NALIGNER/NALIGNER.test \
2433	NAMES/NAMES.test \
2434	PHYLO/PHYLO.test \
2435	PRIMER_DESIGN/PRIMER_DESIGN.test \
2436	PROBE_DESIGN/PROBE_DESIGN.test \
2437	SECEDIT/SECEDIT.test \
2438	SEQ_QUALITY/SEQ_QUALITY.test \
2439	SERVERCNTRL/SERVERCNTRL.test \
2440	SL/ALIVIEW/ALIVIEW.test \
2441	SL/AP_TREE/AP_TREE.test \
2442	SL/ARB_TREE/ARB_TREE.test \
2443	SL/AW_HELIX/AW_HELIX.test \
2444	SL/AW_NAME/AW_NAME.test \
2445	SL/DB_SCANNER/DB_SCANNER.test \
2446	SL/GUI_ALIVIEW/GUI_ALIVIEW.test \
2447	SL/HELIX/HELIX.test \
2448	SL/LOCATION/LOCATION.test \
2449	SL/MATRIX/MATRIX.test \
2450	SL/QUERY/QUERY.test \
2451	SL/REFENTRIES/REFENTRIES.test \
2452	SL/SEQUENCE/SEQUENCE.test \
2453	SL/TRANSLATE/TRANSLATE.test \
2454	SL/TREE_ADMIN/TREE_ADMIN.test \
2455	SL/TREE_WRITE/TREE_WRITE.test \
2456	STAT/STAT.test \
2457	TREEGEN/TREEGEN.test \
2458	WETC/WETC.test \
2459	XML/XML.test \
2460
2461	# untestable units
2462
2463	UNITS_NEED_FIX = \
2464	ptpan/PROBE.test \
2465
2466	UNITS_UNTESTABLE_ATM = \
2467	XML_IMPORT/XML_IMPORT.test \
2468
2469	# for the moment, put all units containing tests into the following 4 sections (see also TESTED_UNITS below)
2470
2471	# recent development
2472	UNITS_TESTED_FIRST = \
2473	SL/PVP/PVP.test \
2474	AWTI/AWTI.test \
2475	SL/FILTSEQEXP/FILTSEQEXP.test \
2476	SL/GROUP_SEARCH/GROUP_SEARCH.test \
2477
2478	# start units with long duration early
2479	UNITS_RUNNING_LONG = \
2480	ARBDB/libARBDB.test \
2481	AWTC/AWTC.test \
2482	TOOLS/arb_test.test \
2483
2484	# plain test-libaries that are not linked anywhere
2485	TEST_SANDBOXES = \
2486	SL/CB/CB.test \
2487
2488	UNITS_TESTED = \
2489	AISC_MKPTPS/mkptypes.test \
2490	ARB_GDE/ARB_GDE.test \
2491	AWT/libAWT.test \
2492	CONSENSUS_TREE/CONSENSUS_TREE.test \
2493	CONVERTALN/CONVERTALN.test \
2494	CORE/libCORE.test \
2495	DBSERVER/DBSERVER.test \
2496	DIST/DIST.test \
2497	EDIT4/EDIT4.test \
2498	GENOM_IMPORT/GENOM_IMPORT.test \
2499	HELP_SOURCE/arb_help2xml.test \
2500	MERGE/MERGE.test \
2501	MULTI_PROBE/MULTI_PROBE.test \
2502	NTREE/NTREE.test \
2503	PARSIMONY/PARSIMONY.test \
2504	PERLTOOLS/arb_proto_2_xsub.test \
2505	PROBE/PROBE.test \
2506	PROBE_SET/fb_test.test \
2507	SERVERCNTRL/SERVERCNTRL.test \
2508	SL/ALILINK/ALILINK.test \
2509	SL/CONSENSUS/CONSENSUS.test \
2510	SL/DB_QUERY/DB_QUERY.test \
2511	SL/FAST_ALIGNER/FAST_ALIGNER.test \
2512	SL/FILTER/FILTER.test \
2513	SL/INSDEL/INSDEL.test \
2514	SL/ITEM_SHADER/ITEM_SHADER.test \
2515	SL/ITEMS/ITEMS.test \
2516	SL/MACROS/MACROS.test \
2517	SL/NDS/NDS.test \
2518	SL/NEIGHBOURJOIN/NEIGHBOURJOIN.test \
2519	SL/PRONUC/PRONUC.test \
2520	SL/PTCLEAN/PTCLEAN.test \
2521	SL/REGEXPR/REGEXPR.test \
2522	SL/SEQIO/SEQIO.test \
2523	SL/TREE_READ/TREE_READ.test \
2524	SL/TREEDISP/TREEDISP.test \
2525	TOOLS/arb_consensus_tree.test \
2526	TOOLS/arb_probe.test \
2527	WINDOW/libWINDOW.test \
2528
2529	TESTED_UNITS = \
2530	$(UNITS_TESTED_FIRST) \
2531	$(UNITS_RUNNING_LONG) \
2532	$(TEST_SANDBOXES) \
2533	$(UNITS_TESTED) \
2534
2535	# see UNIT_TESTER/sym2testcode.pl@disableErrorOnUnitsWithoutTests
2536
2537	# ----------------------------------------
2538
2539	TEST_LOG_DIR = UNIT_TESTER/logs
2540	TEST_RUN_SUITE=$(MAKE) $(NODIR) -C UNIT_TESTER -f Makefile.suite -r
2541	TEST_MAKE_FLAGS=
2542	TEST_POST_CLEAN=
2543	ifeq ($(COVERAGE),1)
2544	TEST_POST_CLEAN=$(MAKE) clean_cov
2545	TEST_MAKE_FLAGS+=-j1
2546	endif
2547
2548
2549	%.test:
2550	-@( export ID=$$$$; mkdir -p $(TEST_LOG_DIR); \
2551	( \
2552	echo "fake[1]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"; \
2553	$(MAKE) -C UNIT_TESTER -f Makefile.test -r \
2554	"UNITDIR=$(@D)" \
2555	"UNITLIBNAME=$(@F:.test=)" \
2556	"COVERAGE=$(COVERAGE)" \
2557	"ARB_PID=$(ARB_PID)_$(@F)" \
2558	runtest; \
2559	echo "fake[1]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"; \
2560	$(TEST_POST_CLEAN) \
2561	) >$(TEST_LOG_DIR)/$(@F).log 2>&1; \
2562	UNIT_TESTER/log_result.pl $(TEST_LOG_DIR)/$(@F).log )
2563
2564
2565	test_base: $(UNIT_TESTER_LIB:.a=.dummy) $(subst .test,.dummy,$(TEST_SANDBOXES))
2566
2567	clean_cov:
2568	find . \( -name ".gcda" -o -name ".gcov" -o -name "*.cov" \) -exec rm {} \;
2569
2570	clean_cov_all: clean_cov
2571	find . \( -name "*.gcno" \) -exec rm {} \;
2572
2573	run_tests: test_base clean_cov
2574	$(MAKE) "ARB_PID=UT_$$$$" run_tests_faked_arbpid
2575
2576	cleanup_faked_arbpids:
2577	@rm ~/.arb_tmp/tmp/arb_pids_${USER}_${ARB_PID}_* \|\| true
2578
2579	cleanup_faked_arbpids_and_fail: cleanup_faked_arbpids
2580	@false
2581
2582	run_tests_faked_arbpid:
2583	+@$(TEST_RUN_SUITE) init
2584	@echo "fake[2]: Entering directory \`$(ARBHOME)/UNIT_TESTER'"
2585	$(MAKE) $(TEST_MAKE_FLAGS) $(NODIR) $(TESTED_UNITS) \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2586	@echo "fake[2]: Leaving directory \`$(ARBHOME)/UNIT_TESTER'"
2587	+@$(TEST_RUN_SUITE) cleanup \|\| $(MAKE) cleanup_faked_arbpids_and_fail
2588	@$(MAKE) clean_cov >/dev/null
2589	@$(MAKE) cleanup_faked_arbpids
2590
2591	ut:
2592	ifeq ($(UNIT_TESTS),1)
2593	@echo $(MAKE) run_tests
2594	@$(MAKE) run_tests
2595	else
2596	@echo "Not compiled with unit tests"
2597	endif
2598
2599
2600	aut:
2601	+@$(TEST_RUN_SUITE) unskip
2602	$(MAKE) ut
2603
2604	# --------------------------------------------------------------------------------
2605
2606	TIMELOG=$(ARBHOME)/arb_time.log
2607	TIMEARGS=--append --output=$(TIMELOG) --format=" %E(%S+%U) %P [%C]"
2608	TIMECMD=$(TIME) $(TIMEARGS)
2609
2610	time_one:
2611	ifeq ($(ONE_TIMED_TARGET),)
2612	@echo "Error: You have to pass ONE_TIMED_TARGET to $@"
2613	false
2614	else
2615	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET)"
2616	@$(TIMECMD) $(MAKE) $(ONE_TIMED_TARGET)
2617	@echo "$(SEP) $(MAKE) $(ONE_TIMED_TARGET) [done]"
2618	endif
2619
2620	timed_target:
2621	ifeq ($(TIMED_TARGET),)
2622	@echo "Error: You have to pass TIMED_TARGET to $@"
2623	false
2624	else
2625	@echo "Build time:" > $(TIMELOG)
2626	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2627	@cat $(TIMELOG)
2628	@rm $(TIMELOG)
2629	endif
2630
2631	timed_target_tested:
2632	ifeq ($(TIMED_TARGET),)
2633	@echo "Error: You have to pass TIMED_TARGET to $@"
2634	false
2635	else
2636	@echo "Build time:" > $(TIMELOG)
2637	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2638	$(MAKE) "ONE_TIMED_TARGET=ut" time_one
2639	@cat $(TIMELOG)
2640	@rm $(TIMELOG)
2641	endif
2642
2643	clean_timed_target:
2644	ifeq ($(TIMED_TARGET),)
2645	@echo "Error: You have to pass TIMED_TARGET to $@"
2646	false
2647	else
2648	@echo "Build time:" > $(TIMELOG)
2649	$(MAKE) "ONE_TIMED_TARGET=clean" time_one
2650	$(MAKE) "ONE_TIMED_TARGET=$(TIMED_TARGET)" time_one
2651	@cat $(TIMELOG)
2652	@rm $(TIMELOG)
2653	endif
2654
2655	# --------------------------------------------------------------------------------
2656
2657	CHECKOUT_MODIFIED=0# set to 1 to temporarily skip test for modifications (do not check in if set to 1)
2658
2659	check_svn_does_not_contain_generated:
2660	ifeq ($(CHECKOUT_MODIFIED),0)
2661	@echo "Testing that build does not modify files in SVN"
2662	@test 0 = `svn status \| wc -l` \|\| ( \
2663	echo "The checkout is not/no longer clean:"; \
2664	svn status; \
2665	echo "- if this fails instantly, your checkout is not clean"; \
2666	echo "- if this fails after other targets, these targets modify checked in data"; \
2667	echo " (a common cause may be that depends are not up to date)"; \
2668	false)
2669	else
2670	grep -Hn 'CHECKOUT_MODIFIED' Makefile
2671	endif
2672
2673	check_svn_ignores_generated:
2674	@test 0 = `svn status \| grep '^\?' \| wc -l` \|\| ( \
2675	echo "There are svn-unignored files:"; \
2676	svn status \| grep '^\?'; \
2677	echo "(all generated files should be svn-ignored)"; \
2678	false)
2679
2680	check_svn_state: check_svn_does_not_contain_generated
2681	$(MAKE) check_svn_ignores_generated
2682	$(MAKE) savetest
2683
2684	things_that_always_should_work: depends proto
2685
2686	post_commit_check:
2687	@echo "---------------------------------------- [Initial]"
2688	$(MAKE) check_svn_state
2689
2690	$(MAKE) clean
2691	@echo "---------------------------------------- [After 'make clean']"
2692	$(MAKE) check_svn_state
2693
2694	$(MAKE) things_that_always_should_work
2695	@echo "---------------------------------------- [After 'make things_that_always_should_work']"
2696	$(MAKE) check_svn_state
2697
2698	$(MAKE) all
2699	@echo "---------------------------------------- [After 'make all']"
2700	$(MAKE) check_svn_state
2701
2702	$(MAKE) things_that_always_should_work
2703	@echo "---------------------------------------- [Final]"
2704	$(MAKE) check_svn_state
2705
2706	# --------------------------------------------------------------------------------
2707	# sanitize arb_ntree; also works for clients (arb_edit4, ...) started from there.
2708
2709	sanitize: all
2710	( \
2711	export "LSAN_OPTIONS=max_leaks=30:suppressions=$(ARBHOME)/SOURCE_TOOLS/arb.leaksan.supp"; \
2712	echo "sake[1]: Entering directory \`$(ARBHOME)'"; \
2713	$(ARBHOME)/bin/arb_ntree --execute _logged ~/data/test.arb 2>&1 ; \
2714	echo "sake[1]: Leaving directory \`$(ARBHOME)'" \
2715	) \| $(ARBHOME)/SOURCE_TOOLS/asan2msg.pl
2716
2717	# --------------------------------------------------------------------------------
2718	# build and test one unit:
2719
2720	make_oneunit:
2721	$(MAKE) "WITHPERL=1" $(UNIT).dummy
2722
2723	oneunit:
2724	ifndef UNIT
2725	@echo "Please define UNIT, e.g. using"
2726	@echo " make \"UNIT=ARBDB/libARBDB\" oneunit"
2727	@echo " make \"UNIT=SL/TREEDISP/TREEDISP\" oneunit"
2728	@echo "(Note: 1st is a shared library, 2nd isn't)"
2729	false
2730	else
2731	@echo "Build time" > $(TIMELOG)
2732	@echo "$(SEP) $(MAKE) make_oneunit"
2733	@$(TIMECMD) $(MAKE) make_oneunit
2734	ifeq ($(UNIT_TESTS),1)
2735	@echo $(MAKE) run_tests
2736	@$(TIMECMD) $(MAKE) run_tests
2737	endif
2738	@cat $(TIMELOG)
2739	@rm $(TIMELOG)
2740	endif
2741
2742	# --------------------------------------------------------------------------------
2743
2744	build: arb
2745	$(MAKE) check_bin_dep preplib compile_compatibility
2746
2747	all:
2748	@echo "Build time" > $(TIMELOG)
2749	# $(MAKE) clean_checked_vect # uncomment to rebuild sources where expected vectorization gets tested
2750	@echo "$(SEP) $(MAKE) build"
2751	@$(TIMECMD) $(MAKE) build
2752	@echo $(SEP)
2753	@echo "made 'all' with success."
2754	@echo "to start arb enter 'arb'"
2755	ifeq ($(UNIT_TESTS),1)
2756	@echo $(MAKE) run_tests
2757	@$(TIMECMD) $(MAKE) run_tests
2758	endif
2759	@echo "$(SEP) $(MAKE) build [done]"
2760	ifeq ($(DEBUG),1)
2761	@$(MAKE) save_test_no_error >/dev/null # just show hints
2762	endif
2763	@cat $(TIMELOG)
2764	@rm $(TIMELOG)
2765

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