Last change
on this file was
7335,
checked in by westram, 13 years ago
|
- renamed intf (global typename from /usr/include/zconf.h)
- fixed several warnings
- put some #warnings into DEVEL_RALF
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
File size:
1.6 KB
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Line | |
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1 | item:Import sequences using Readseq (slow) ... |
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2 | seqtype:- |
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3 | itemmeta: R |
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4 | itemmethod:arb_readseq $INPUTFILE -a -f2 > OUTPUTFILE |
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5 | itemhelp:readseq.help |
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6 | |
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7 | arg:INPUTFILE |
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8 | argtype:filename |
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9 | arglabel:Name of file to import |
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10 | |
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11 | out:OUTPUTFILE |
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12 | outformat:genbank |
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13 | |
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14 | |
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15 | |
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16 | item:Import fields from calc-sheet |
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17 | seqtype:- |
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18 | itemmeta: c |
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19 | itemmethod:( \ |
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20 | import_from_table.pl "$FROMFILE" \ |
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21 | --match "$MATCHCOL,$MATCHFIELD" \ |
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22 | --write "$WRITECOL,$WRITEFIELD" \ |
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23 | $SEPARATOR $OVERWRITE $SKIPUNKNOWN $MARKEDONLY $MARK $ASINT \ |
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24 | )& |
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25 | |
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26 | arg:FROMFILE |
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27 | argtype:filename |
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28 | arglabel:Import from CSV |
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29 | argtext:csv |
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30 | |
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31 | arg:WRITECOL |
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32 | arglabel:Write content of column |
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33 | argtype:slider |
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34 | argmin:1 |
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35 | argmax:9999 |
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36 | |
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37 | arg:WRITEFIELD |
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38 | arglabel:to field |
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39 | argtype:text |
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40 | |
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41 | arg:MATCHFIELD |
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42 | arglabel:of species for which field |
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43 | argtype:text |
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44 | |
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45 | arg:MATCHCOL |
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46 | arglabel:matches content of column |
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47 | argtype:slider |
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48 | argmin:1 |
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49 | argmax:9999 |
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50 | |
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51 | arg:SEPARATOR |
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52 | argtype:choice_menu |
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53 | arglabel:Columns are separated by |
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54 | argchoice:tabs: |
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55 | argchoice:commas:--csv |
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56 | |
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57 | arg:OVERWRITE |
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58 | argtype:chooser |
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59 | arglabel:Overwrite existing fields |
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60 | argchoice:no: |
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61 | argchoice:yes:--overwrite |
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62 | |
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63 | arg:SKIPUNKNOWN |
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64 | argtype:choice_menu |
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65 | arglabel:Unmatched entries will |
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66 | argchoice:abort importing: |
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67 | argchoice:be skipped:--skip-unknown |
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68 | |
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69 | arg:MARKEDONLY |
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70 | argtype:choice_menu |
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71 | arglabel:Import to |
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72 | argchoice:all species: |
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73 | argchoice:marked species:--marked-only |
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74 | |
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75 | arg:MARK |
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76 | argtype:choice_menu |
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77 | arglabel:Mark |
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78 | argchoice:dont change: |
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79 | argchoice:species when writing field (unmark rest):--mark |
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80 | |
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81 | arg:ASINT |
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82 | arglabel:Field type |
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83 | argtype:choice_menu |
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84 | argchoice:Text: |
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85 | argchoice:Numeric:--as-integer |
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86 | |
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87 | |
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88 | |
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