Last change
on this file was
7492,
checked in by westram, 13 years ago
|
- (re)export environment variable ARB_XCMD on startup
- subprocesses depend on it (arb_textedit, GDE entries)
- default to '$ARB_XTERM -e'
- use bash in subshell
- removed 'cmdtool' as default from GDE scripts (used if ARB_XCMD undefined)
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
File size:
924 bytes
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Line | |
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1 | item:Phylip Distance Methods (Original Phylip, Interactive) |
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2 | itemmeta: I |
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3 | itemmethod:(GEN_INFILE(in1);\ |
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4 | RUN_IN_WINDOW(($DPGM;\ |
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5 | mv -f outfile infile;\ |
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6 | ${ARB_XCMD} $PROGRAM;\ |
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7 | $DISPLAY_FUNC));\ |
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8 | RM_LOCAL_FILES(in1))& |
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9 | itemhelp:phylip_distance.help |
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10 | |
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11 | arg:DISPLAY_FUNC |
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12 | argtype:choice_menu |
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13 | arglabel:What to do with the tree? |
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14 | argchoice:ARB ('tree_ph_xxx'):(arb_read_tree tree_ph_$$ outtree "PRG=$PROGRAM FILTER=$FILTER PKG=phylip (Interactive)") |
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15 | argchoice:TextEdit:arb_textedit outtree |
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16 | argchoice:Treetool:treetool outtree |
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17 | |
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18 | arg:PROGRAM |
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19 | arglabel:Which method? |
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20 | argtype:choice_menu |
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21 | argchoice:Fitch:fitch |
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22 | argchoice:Kitsch:kitsch |
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23 | argchoice:Neighbor:neighbor |
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24 | |
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25 | arg:DPGM |
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26 | arglabel:Treat data as.. |
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27 | argtype:choice_menu |
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28 | argchoice:RNA/DNA (dnadist):dnadist |
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29 | argchoice:AA (protdist):protdist |
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30 | |
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31 | |
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32 | in:in1 |
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33 | informat:genbank |
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34 | inmask:sdfgdfg |
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35 | insave: |
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36 | |
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