source: tags/old_import_filter/NTREE/NT_local_proto.h

Last change on this file was 10117, checked in by westram, 11 years ago
  • fix include-chaos in NTREE
    • all headers named
      • .h (some had .hxx)
      • as .cxx file
    • removed obsolete header (NT_dbrepair.hxx, nt_join.hxx)
  • removed some more definitions of nt_assert
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 3.7 KB
Line 
1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_LOCAL_PROTO_H
6#define NT_LOCAL_PROTO_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
16AW_window *AP_open_con_expert_window(AW_root *aw_root);
17AW_window *AP_open_max_freq_window(AW_root *aw_root);
18
19/* AP_cprofile.cxx */
20AW_window *AP_open_cprofile_window(AW_root *aw_root);
21
22/* AP_pos_var_pars.cxx */
23AW_window *AP_open_pos_var_pars_window(AW_root *root);
24
25/* ColumnStat_2_gnuplot.cxx */
26AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
27
28/* NT_branchAnalysis.cxx */
29AW_window *NT_open_branch_analysis_window(AW_root *aw_root, AW_CL cl_ntw);
30
31/* NT_cb.cxx */
32
33#ifndef ARBDB_BASE_H
34#include <arbdb_base.h>
35#endif
36#ifndef AW_BASE_HXX
37#include <aw_base.hxx>
38#endif
39class AWT_canvas;
40
41void NT_delete_mark_all_cb(void *, AWT_canvas *ntw);
42AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree);
43void NT_select_bottom_tree(AW_window *aww, const char *awar_tree);
44AW_window *NT_open_select_alignment_window(AW_root *awr);
45void NT_system_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
46void NT_system_in_xterm_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
47
48/* NT_concatenate.cxx */
49void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def);
50AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
51AW_window *NT_createConcatenationWindow(AW_root *aw_root);
52
53/* NT_dbrepair.cxx */
54GB_ERROR NT_repair_DB(GBDATA *gb_main);
55void NT_rerepair_DB(AW_window *, AW_CL cl_gbmain, AW_CL dummy_1x);
56
57/* NT_edconf.cxx */
58void NT_popup_configuration_admin(AW_window *aw_main, AW_CL cl_ntw, AW_CL dummy_1x);
59AW_window *NT_start_editor_on_old_configuration(AW_root *awr);
60void NT_start_editor_on_tree(AW_window *, AW_CL cl_use_species_aside, AW_CL cl_ntw);
61
62/* NT_extern.cxx */
63int NT_get_canvas_id(AWT_canvas *ntw);
64
65/* NT_import.cxx */
66void NT_import_sequences(AW_window *aww, AW_CL dummy_1x, AW_CL dummy_2x);
67
68/* NT_join.cxx */
69AW_window *NT_create_species_join_window(AW_root *root);
70
71/* NT_main.cxx */
72GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
73
74/* NT_sort.cxx */
75void NT_resort_data_by_phylogeny(AW_window *, AW_CL cl_ntw, AW_CL dummy_1x);
76void NT_build_resort_awars(AW_root *awr, AW_default aw_def);
77AW_window *NT_build_resort_window(AW_root *awr);
78
79/* NT_trackAliChanges.cxx */
80void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
81AW_window *NT_create_trackAliChanges_window(AW_root *root);
82
83/* NT_validManual.cxx */
84void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
85AW_window *NT_searchManuallyNames(AW_root *aw_root);
86
87/* NT_validNames.cxx */
88void NT_deleteValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
89void NT_importValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
90void NT_suggestValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
91
92/* ad_ali.cxx */
93void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def);
94AW_window *NT_create_alignment_window(AW_root *root, AW_CL popmedown);
95
96/* ad_ext.cxx */
97AW_window *NT_create_extendeds_window(AW_root *aw_root);
98
99/* ad_spec.cxx */
100void NT_count_different_chars(AW_window *, AW_CL cl_gb_main, AW_CL dummy_1x);
101void NT_create_sai_from_pfold(AW_window *aww, AW_CL ntw, AW_CL dummy_1x);
102
103/* ad_transpro.cxx */
104AW_window *NT_create_dna_2_pro_window(AW_root *root);
105AW_window *NT_create_realign_dna_window(AW_root *root);
106void NT_create_transpro_variables(AW_root *root, AW_default db1);
107
108/* ad_trees.cxx */
109AW_window *NT_create_consense_window(AW_root *aw_root);
110
111#else
112#error NT_local_proto.h included twice
113#endif /* NT_LOCAL_PROTO_H */
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