source: tags/old_import_filter/SL/PTCLEAN/ptclean.h

Last change on this file was 8041, checked in by westram, 13 years ago

merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] [8001] [8003] [8005] [8006] [8007] [8008] [8009] [8011] [8012] [8019]

  • added a faked ecoli to ptserver test-db
  • added unit-tests for gene-ptserver
  • rename ptserver testdb
  • ptserver db-cleanup
    • size of mapfile for SSUREF108 is reduced by 85% (3,4Gb → 519Mb)
  • ptserver
    • refactored
      • prefix tree builders
      • probe_input_data
    • removed ptnd_new_match (dead code)
File size: 986 bytes
Line 
1// ================================================================= //
2//                                                                   //
3//   File      : ptclean.h                                           //
4//   Purpose   : prepare db for ptserver/ptpan                       //
5//                                                                   //
6//   Coded by Ralf Westram (coder@reallysoft.de) in September 2011   //
7//   Institute of Microbiology (Technical University Munich)         //
8//   http://www.arb-home.de/                                         //
9//                                                                   //
10// ================================================================= //
11
12#ifndef PTCLEAN_H
13#define PTCLEAN_H
14
15#ifndef ARBDB_BASE_H
16#include <arbdb_base.h>
17#endif
18
19enum Servertype {
20    PTSERVER,
21    PTPAN
22};
23
24GB_ERROR prepare_ptserver_database(GBDATA *gb_main, Servertype type);
25
26#else
27#error ptclean.h included twice
28#endif // PTCLEAN_H
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