../
|
AISC
|
|
8324
|
12 years
|
westram |
- clang-fix: explicitely pass language type to compiler when .c is …
|
AISC_COM
|
|
8314
|
12 years
|
westram |
* removed AISC debug code
|
AISC_MKPTPS
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
ARB_GDE
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
ARBDB
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
AWT
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
AWTC
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
|
AWTI
|
|
8359
|
12 years
|
westram |
* added 'Never ask again' switch to most modal question dialogs. This …
|
bin
|
|
7983
|
13 years
|
westram |
- ignore link to collect_gene_info.pl
|
BINDEP
|
|
8273
|
12 years
|
westram |
- removed dead ALIV3
|
BUGEX
|
|
7044
|
13 years
|
westram |
* fixed include wrappers (merges [7006] [7007])
- use gcc-style …
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CONSENSUS_TREE
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
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CONVERTALN
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
CORE
|
|
8367
|
12 years
|
westram |
- GBK_system error no longer gives hint to look at console window, …
|
DBSERVER
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
DIST
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
doc
|
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
EDIT4
|
|
8363
|
12 years
|
westram |
* property file loading
- missing fallback for 'Save loaded …
|
EISPACK
|
|
7803
|
13 years
|
westram |
merge from dev [7716] [7732] [7733] [7734] [7735]
* script to …
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etc
|
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
GDE
|
|
8240
|
12 years
|
westram |
- patch for ubuntu 11.10 oneiric / gcc 4.6.1 (thx to Kai)
* dont …
|
GDEHELP
|
|
8205
|
12 years
|
westram |
merge from stable_5.0 [8203]
* removed molphy (protml)
|
GENOM
|
|
8360
|
12 years
|
westram |
* renamed menu separator functions
* removed macro AWMIMT
|
GENOM_IMPORT
|
|
8251
|
12 years
|
westram |
- removed using decls from headers
|
GL
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
|
HEADERLIBS
|
|
7895
|
13 years
|
westram |
* added arb_rnacma (correlated mutation analysis) written by Breno …
|
HELP_SOURCE
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
ISLAND_HOPPING
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
lib
|
|
8056
|
12 years
|
westram |
* fixed undefined AWAR_CANIO_BORDERSIZE in canvas_to_xfig
- …
|
MERGE
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
MULTI_PROBE
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
NALIGNER
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
|
NAMES
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
NAMES_COM
|
|
8324
|
12 years
|
westram |
- clang-fix: explicitely pass language type to compiler when .c is …
|
NTREE
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
PARSIMONY
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
PERL2ARB
|
|
8312
|
12 years
|
westram |
- corrected refs wrong since [7781]
|
PERL_SCRIPTS
|
|
8319
|
12 years
|
westram |
* ignored PERL2ARB interface as referrer (to detect functions that are …
|
PERLTOOLS
|
|
7819
|
13 years
|
westram |
merge from dev [7774] [7778] [7779] [7780] [7781] [7782] [7783] [7784] …
|
PGT
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
PHYLO
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
PRIMER_DESIGN
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
PROBE
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
|
PROBE_COM
|
|
8324
|
12 years
|
westram |
- clang-fix: explicitely pass language type to compiler when .c is …
|
PROBE_DESIGN
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
PROBE_SET
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
ptpan
|
|
7935
|
13 years
|
westram |
- removed outdated ptpan
|
READSEQ
|
|
7803
|
13 years
|
westram |
merge from dev [7716] [7732] [7733] [7734] [7735]
* script to …
|
RNA3D
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
RNACMA
|
|
8322
|
12 years
|
westram |
- clang-fix: replace auto-arrays of non-POD types by dynamic memory
|
SECEDIT
|
|
8360
|
12 years
|
westram |
* renamed menu separator functions
* removed macro AWMIMT
|
SEQ_QUALITY
|
|
8313
|
12 years
|
westram |
* removed dead code
(partly reverted by [8316])
|
SERVERCNTRL
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
SH
|
|
8241
|
12 years
|
westram |
- use libmotif4
- changed way to add the ARB repository to sources.lst
|
SL
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
SOURCE_TOOLS
|
|
8360
|
12 years
|
westram |
* renamed menu separator functions
* removed macro AWMIMT
|
STAT
|
|
8309
|
12 years
|
westram |
* moved much code into static scope
(partly reverted by [8310])
|
TEMPLATES
|
|
8420
|
12 years
|
westram |
- added LocallyModify::old_value()
|
TOOLS
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
TREEGEN
|
|
8249
|
12 years
|
westram |
* wrap main for untested (but testable) units
- still untestable
…
|
UNIT_TESTER
|
|
8352
|
12 years
|
westram |
- change result expected by unit-test (according to [8351])
|
util
|
|
8041
|
12 years
|
westram |
merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] …
|
WETC
|
|
8249
|
12 years
|
westram |
* wrap main for untested (but testable) units
- still untestable
…
|
WINDOW
|
|
8423
|
12 years
|
westram |
* use LocallyModify for several flags
|
XML
|
|
8393
|
12 years
|
westram |
- cppchecked (1.53)
|
XML_IMPORT
|
|
7811
|
13 years
|
westram |
merge from dev [7748] [7749] [7750]
* comments (C→C++ style)
* …
|
arb_CHANGES.txt
|
10.4 KB
|
6774
|
14 years
|
westram |
- merged changelog from stable (all changes are already in trunk)
|
arb_DEBUG.txt
|
1.2 KB
|
578
|
22 years
|
westram |
* empty log message *
|
arb_install.sh
|
14.3 KB
|
6350
|
14 years
|
westram |
- accept arb.tgz as file (not only as link). Needed if you install ARB …
|
arb_INSTALL.txt
|
3.7 KB
|
8283
|
12 years
|
westram |
- compile on suse 12.1
|
arb_LICENSE.txt
|
10.7 KB
|
8205
|
12 years
|
westram |
merge from stable_5.0 [8203]
* removed molphy (protml)
|
arb_OS_X.txt
|
5.5 KB
|
6214
|
14 years
|
westram |
- updated OS_X info (thx to Matt)
|
arb_OS_X_MacPorts.txt
|
370 bytes
|
6288
|
14 years
|
westram |
* include ALL arb_*.txt into release tarball
* renamed …
|
arb_README.txt
|
5.9 KB
|
8212
|
12 years
|
westram |
merge from stable_5.0 [8207] [8210] [8211]
* refer to ubuntu 10.04 …
|
arb_UBUNTU.txt
|
1.2 KB
|
8212
|
12 years
|
westram |
merge from stable_5.0 [8207] [8210] [8211]
* refer to ubuntu 10.04 …
|
arbsrc_README.txt
|
210 bytes
|
6288
|
14 years
|
westram |
* include ALL arb_*.txt into release tarball
* renamed …
|
arbsrc_README_gcc.txt
|
2.1 KB
|
7331
|
13 years
|
westram |
- tested and added gcc 4.5.2
|
config.makefile.template
|
1.6 KB
|
7337
|
13 years
|
westram |
* possibility to toggle the -warnings via config.makefile
|
demo.arb
|
78.9 KB
|
7664
|
13 years
|
westram |
* merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] …
|
Doxyfile
|
62.2 KB
|
6864
|
14 years
|
westram |
* doxygen (merges [6852] [6854] [6857] from refactor)
- workaround …
|
Makefile
|
56.7 KB
|
8327
|
12 years
|
westram |
- clang static analyzer working
|
README
|
717 bytes
|
5390
|
16 years
|
westram |
- TAB-Ex
|